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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0841080 |
| Transcript ID | Lj5g3v0841080.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | transcription factor CCAAT [Lotus japonicus] gi|193237567|dbj|BAG50060.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 332 | 332 | 1.00E-169 | – | |
| PANTHER | 1 | 332 | 332 | 1.00E-169 | ||
| SMART | 157 | 218 | 62 | 1.50E-34 | ||
| ProSiteProfiles | 158 | 218 | 61 | 34.945 | ||
| Pfam | 161 | 215 | 55 | 9.50E-26 | ||
| PRINTS | 161 | 183 | 23 | 1.70E-21 | ||
| PRINTS | 192 | 215 | 24 | 1.70E-21 | ||
| MobiDBLite | 198 | 275 | 78 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of Lj5g3v0841080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0841080.1, powered by CORGI.
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