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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001289
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 21 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.534s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0252369.1
n.a. PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 [Cicer arietinum] gi|502165192|ref|XP_004513462.1| chr0 130843706 130847210 +
6 domain predictions
2 GO terms
Lj0g3v0252369.2
n.a. n.a. chr0 130845352 130847210 +
6 domain predictions
2 GO terms
Lj1g3v4752710.1
n.a. transcription factor CCAAT [Lotus japonicus] gi|193237557|dbj|BAG50055.1| chr1 56792271 56795656 -
6 domain predictions
2 GO terms
Lj1g3v4752710.2
n.a. transcription factor CCAAT [Lotus japonicus] gi|193237557|dbj|BAG50055.1| chr1 56792271 56795386 -
6 domain predictions
2 GO terms
Lj2g3v3336090.1
n.a. PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max] gi|356566267|ref|XP_003551355.1| chr2 42226718 42229788 -
6 domain predictions
2 GO terms
Lj3g3v0338970.1
n.a. PREDICTED: nuclear transcription factor Y subunit A-3-like [Cicer arietinum] gi|502081419|ref|XP_004486861.1| chr3 2706567 2710060 -
6 domain predictions
2 GO terms
Lj3g3v0338970.3
n.a. PREDICTED: nuclear transcription factor Y subunit A-3-like [Cicer arietinum] gi|502081419|ref|XP_004486861.1| chr3 2706567 2711658 -
6 domain predictions
2 GO terms
Lj3g3v2657800.1
n.a. PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 [Cicer arietinum] gi|502156346|ref|XP_004510428.1| chr3 32340257 32344921 +
6 domain predictions
2 GO terms
Lj4g3v2179250.1
n.a. nuclear transcription factor Y subunit A-3 [Arachis hypogaea] gi|469609862|gb|AGH62008.1| chr4 30138237 30140896 -
6 domain predictions
2 GO terms
Lj5g3v0841080.1
n.a. transcription factor CCAAT [Lotus japonicus] gi|193237567|dbj|BAG50060.1| chr5 12098272 12102233 -
6 domain predictions
2 GO terms
Lj6g3v0647470.1
n.a. PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max] gi|356566267|ref|XP_003551355.1| chr6 6366288 6371373 +
6 domain predictions
2 GO terms
LotjaGi1g1v0011200.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT5G12840.2 nuclear factor Y, subunit A1; Swiss-Prot: sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1; TrEMBL-Plants: tr|K7MQE5|K7MQE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0011200 LjG1.1_chr1 1387173 1390400 +
6 domain predictions
2 GO terms
LotjaGi1g1v0738200.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT5G06510.1 nuclear factor Y, subunit A10; Swiss-Prot: sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10; TrEMBL-Plants: tr|B3IX28|B3IX28_LOTJA Transcription factor CCAAT; Found in the gene: LotjaGi1g1v0738200 LjG1.1_chr1 131260959 131265119 -
6 domain predictions
2 GO terms
LotjaGi3g1v0029300.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT1G17590.1 nuclear factor Y, subunit A8; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|G7IS22|G7IS22_MEDTR CCAAT-binding transcription factor; Found in the gene: LotjaGi3g1v0029300 LjG1.1_chr3 3206552 3212916 -
6 domain predictions
2 GO terms
LotjaGi3g1v0029300.2
n.a. Nuclear transcription factor Y subunit; TAIR: AT1G17590.1 nuclear factor Y, subunit A8; Swiss-Prot: sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8; TrEMBL-Plants: tr|G7IS22|G7IS22_MEDTR CCAAT-binding transcription factor; Found in the gene: LotjaGi3g1v0029300 LjG1.1_chr3 3206552 3212916 -
6 domain predictions
2 GO terms
LotjaGi3g1v0417600.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT1G72830.1 nuclear factor Y, subunit A3; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|A0A151T9E0|A0A151T9E0_CAJCA Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi3g1v0417600 LjG1.1_chr3 82424435 82429083 +
6 domain predictions
2 GO terms
LotjaGi3g1v0417600.2
n.a. Nuclear transcription factor Y subunit; TAIR: AT1G72830.1 nuclear factor Y, subunit A3; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|A0A151T9E0|A0A151T9E0_CAJCA Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi3g1v0417600 LjG1.1_chr3 82424435 82429083 +
6 domain predictions
2 GO terms
LotjaGi4g1v0385700.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT1G30500.2 nuclear factor Y, subunit A7; Swiss-Prot: sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7; TrEMBL-Plants: tr|C6TCG7|C6TCG7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0385700 LjG1.1_chr4 76395093 76401339 +
6 domain predictions
2 GO terms
LotjaGi5g1v0106700.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT5G06510.1 nuclear factor Y, subunit A10; Swiss-Prot: sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10; TrEMBL-Plants: tr|B3IX33|B3IX33_LOTJA Transcription factor CCAAT; Found in the gene: LotjaGi5g1v0106700 LjG1.1_chr5 20176121 20180745 -
6 domain predictions
2 GO terms
LotjaGi6g1v0135700.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT5G12840.2 nuclear factor Y, subunit A1; Swiss-Prot: sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1; TrEMBL-Plants: tr|A0A0B2REF6|A0A0B2REF6_GLYSO Nuclear transcription factor Y subunit A-1; Found in the gene: LotjaGi6g1v0135700 LjG1.1_chr6 39152372 39157541 +
6 domain predictions
2 GO terms
LotjaGi6g1v0227300.1
n.a. Nuclear transcription factor Y subunit; TAIR: AT1G54160.1 nuclear factor Y, subunit A5; Swiss-Prot: sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5; TrEMBL-Plants: tr|A0A0B2PSG7|A0A0B2PSG7_GLYSO Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi6g1v0227300 LjG1.1_chr6 53316894 53321423 +
6 domain predictions
2 GO terms