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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1172180 |
| Transcript ID | Lj5g3v1172180.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356576487|ref|XP_003556362.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 314 | 285 | 0 | ||
| PANTHER | 30 | 314 | 285 | 0 | – | |
| MobiDBLite | 42 | 92 | 51 | – | – | |
| ProSiteProfiles | 190 | 286 | 97 | 19.244 | ||
| SUPERFAMILY | 191 | 283 | 93 | 2.35E-20 | ||
| Gene3D | 191 | 283 | 93 | 1.10E-19 | ||
| Pfam | 192 | 275 | 84 | 3.20E-29 | ||
| SMART | 192 | 275 | 84 | 5.80E-13 | ||
| MobiDBLite | 312 | 343 | 32 | – | – | |
| PANTHER | 353 | 681 | 329 | 0 | ||
| PANTHER | 353 | 681 | 329 | 0 | – | |
| ProSiteProfiles | 434 | 531 | 98 | 15.166 | ||
| SMART | 436 | 520 | 85 | 5.70E-11 | ||
| Gene3D | 436 | 527 | 92 | 3.60E-26 | ||
| SUPERFAMILY | 436 | 526 | 91 | 4.32E-17 | ||
| Pfam | 439 | 520 | 82 | 7.70E-15 | ||
| Coils | 529 | 549 | 21 | – | – | |
| Coils | 609 | 636 | 28 | – | – | |
| ProSiteProfiles | 647 | 681 | 35 | 8.018 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Group II intron splicing | The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj5g3v1172180.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1172180.2, powered by CORGI.
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