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PS51295

Source: ProSiteProfiles

Description

CRM domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 53

Transcript Name Description Predicted domains Domain count
Lj0g3v0094509.1
– PREDICTED: CRS2-associated factor 2, chloroplastic-like [Cicer arietinum] gi|502154246|ref|XP_004509634.1|
Domains
9
Lj0g3v0265619.1
– PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356495236|ref|XP_003516485.1|
Domains
8
Lj0g3v0265619.2
– PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356495236|ref|XP_003516485.1|
Domains
9
Lj0g3v0271109.1
– PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cicer arietinum] gi|502104876|ref|XP_004492668.1|
Domains
10
Lj0g3v0316149.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356527819|ref|XP_003532504.1|
Domains
10
Lj0g3v0316149.2
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356527819|ref|XP_003532504.1|
Domains
10
Lj0g3v0331349.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502090784|ref|XP_004489339.1|
Domains
15
Lj2g3v0726310.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cicer arietinum] gi|502163697|ref|XP_004512920.1|
Domains
10
Lj2g3v0726310.2
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cicer arietinum] gi|502163697|ref|XP_004512920.1|
Domains
10
Lj2g3v0921520.1
– RNA-binding CRS1 / YhbY domain protein [Theobroma cacao] gi|508710635|gb|EOY02532.1|
Domains
10
Lj2g3v1021080.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090787|ref|XP_004489340.1|
Domains
9
Lj2g3v1021080.3
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090787|ref|XP_004489340.1|
Domains
9
Lj2g3v1034410.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356573408|ref|XP_003554853.1|
Domains
8
Lj2g3v1192990.1
– PREDICTED: CRS2-associated factor 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502102996|ref|XP_004492171.1|
Domains
9
Lj2g3v1192990.2
– PREDICTED: CRS2-associated factor 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502102996|ref|XP_004492171.1|
Domains
9
Lj3g3v3313890.1
– RNA-binding CRS1 / YhbY domain protein [Theobroma cacao] gi|508712954|gb|EOY04851.1|
Domains
11
Lj3g3v3313890.2
– RNA-binding CRS1 / YhbY domain protein [Theobroma cacao] gi|508712954|gb|EOY04851.1|
Domains
11
Lj4g3v2172480.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356564786|ref|XP_003550629.1|
Domains
10
Lj4g3v3056190.1
– PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356527769|ref|XP_003532480.1|
Domains
9
Lj4g3v3099320.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356527819|ref|XP_003532504.1|
Domains
15
Lj4g3v3111680.1
– RNA-binding CRS1 / YhbY domain protein isoform 1 [Theobroma cacao] gi|508706932|gb|EOX98828.1|
Domains
9
Lj5g3v1172180.1
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356576487|ref|XP_003556362.1|
Domains
11
Lj5g3v1172180.2
– PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356576487|ref|XP_003556362.1|
Domains
11
Lj6g3v0497370.1
– RNA-binding CRS1 / YhbY domain protein [Theobroma cacao] gi|508701835|gb|EOX93731.1|
Domains
10
LotjaGi1g1v0169500.1
– CRS2-associated factor 1, chloroplastic; TAIR: AT4G31010.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial; TrEMBL-Plants: tr|A0A151SIQ3|A0A151SIQ3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0169500
Domains
11
LotjaGi1g1v0547600.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT5G16180.1 maize chloroplast splicing factor-like protein; Swiss-Prot: sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TrEMBL-Plants: tr|K7MVH3|K7MVH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0547600
Domains
12
LotjaGi2g1v0206300.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2RJN1|A0A0B2RJN1_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi2g1v0206300
Domains
11
LotjaGi2g1v0222200.1
– CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|I1J815|I1J815_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0222200
Domains
10
LotjaGi2g1v0239900.1
– CRS1/YhbY (CRM) domain protein; TAIR: AT3G27550.2 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A0B2QEH4|A0A0B2QEH4_GLYSO Putative CRM domain-containing protein, chloroplastic; Found in the gene: LotjaGi2g1v0239900
Domains
11
LotjaGi2g1v0251500.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500
Domains
16
LotjaGi2g1v0251500.2
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500
Domains
16
LotjaGi2g1v0251500.3
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500
Domains
16
LotjaGi2g1v0251500.4
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500
Domains
16
LotjaGi2g1v0251500.5
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500
Domains
16
LotjaGi2g1v0255900.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900
Domains
9
LotjaGi2g1v0255900.2
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900
Domains
9
LotjaGi2g1v0255900.3
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900
Domains
9
LotjaGi2g1v0256000.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000
Domains
8
LotjaGi2g1v0256000.2
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000
Domains
8
LotjaGi2g1v0284800.1
– CRS2-associated factor 1; TAIR: AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial; TrEMBL-Plants: tr|V7C8Q9|V7C8Q9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0284800
Domains
10
LotjaGi2g1v0284800.3
– CRS2-associated factor 1; TAIR: AT5G54890.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9USQ4|A0A0L9USQ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0284800
Domains
10
LotjaGi3g1v0498800.1
– CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800
Domains
16
LotjaGi3g1v0498800.2
– CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800
Domains
13
LotjaGi3g1v0498800.3
– CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800
Domains
13
LotjaGi3g1v0513600.1
– RNA-binding CRS1 / YhbY (CRM) domain protein; TAIR: AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI; TrEMBL-Plants: tr|I3S7L9|I3S7L9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0513600
Domains
17
LotjaGi4g1v0153800.1
– CRS2-associated factor 1, chloroplastic; TAIR: AT1G23400.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7GVW5|A0A1J7GVW5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0153800
Domains
11
LotjaGi4g1v0310200.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QCH4|A0A0B2QCH4_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi4g1v0310200
Domains
11
LotjaGi4g1v0446800.1
– CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|K7L4R1|K7L4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0446800
Domains
10
LotjaGi4g1v0453100.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7L4X1|K7L4X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453100
Domains
16
LotjaGi4g1v0454900.1
– CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900
Domains
11
LotjaGi4g1v0454900.2
– CRS1 / YhbY (CRM) domain-containing protein; TAIR: AT4G13070.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|K7L4Y2|K7L4Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0454900
Domains
11
LotjaGi5g1v0186400.1
– Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G23070.1 CRM family member 3A; Swiss-Prot: sp|F4J2U9|CFM3A_ARATH CRM-domain containing factor CFM3A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T1A4|A0A151T1A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0186400
Domains
12
LotjaGi6g1v0076500.1
– CRS1/YhbY (CRM) domain protein; TAIR: AT3G25440.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A1J7I103|A0A1J7I103_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0076500
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.89