Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31846
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 38 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.026s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0094509.1
n.a. PREDICTED: CRS2-associated factor 2, chloroplastic-like [Cicer arietinum] gi|502154246|ref|XP_004509634.1| chr0 39731533 39734497 +
1 domain prediction
 –
Lj0g3v0227999.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi|357454755|ref|XP_003597658.1| chr0 117851818 117852869 +
1 domain prediction
 –
Lj0g3v0265619.1
n.a. PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356495236|ref|XP_003516485.1| chr0 137624947 137630823 -
1 domain prediction
 –
Lj0g3v0265619.2
n.a. PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356495236|ref|XP_003516485.1| chr0 137626017 137630823 -
1 domain prediction
 –
Lj0g3v0271109.1
n.a. PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cicer arietinum] gi|502104876|ref|XP_004492668.1| chr0 140413137 140416216 +
1 domain prediction
 –
Lj0g3v0316149.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356527819|ref|XP_003532504.1| chr0 165069196 165073169 -
1 domain prediction
 –
Lj0g3v0316149.2
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356527819|ref|XP_003532504.1| chr0 165069196 165073169 -
1 domain prediction
 –
Lj0g3v0316149.3
n.a. Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi|357521157|ref|XP_003630867.1| chr0 165069196 165074108 -
1 domain prediction
 –
Lj0g3v0331349.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502090784|ref|XP_004489339.1| chr0 173171759 173172903 -
1 domain prediction
 –
Lj0g3v0334789.1
n.a. PREDICTED: CRS2-associated factor 2, chloroplastic-like [Cicer arietinum] gi|502154246|ref|XP_004509634.1| chr0 175279872 175280264 +
1 domain prediction
 –
Lj2g3v0726310.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cicer arietinum] gi|502163697|ref|XP_004512920.1| chr2 11487835 11494380 +
1 domain prediction
 –
Lj2g3v0726310.2
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Cicer arietinum] gi|502163697|ref|XP_004512920.1| chr2 11488416 11494380 +
1 domain prediction
 –
Lj2g3v1021080.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090787|ref|XP_004489340.1| chr2 15941835 15948786 -
1 domain prediction
 –
Lj2g3v1021080.3
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090787|ref|XP_004489340.1| chr2 15941835 15948786 -
1 domain prediction
 –
Lj2g3v1034410.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356573408|ref|XP_003554853.1| chr2 16483772 16486470 +
1 domain prediction
 –
Lj2g3v1034410.2
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502090787|ref|XP_004489340.1| chr2 16483772 16486470 +
1 domain prediction
 –
Lj2g3v1192990.1
n.a. PREDICTED: CRS2-associated factor 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502102996|ref|XP_004492171.1| chr2 18860159 18865133 +
1 domain prediction
 –
Lj2g3v1192990.2
n.a. PREDICTED: CRS2-associated factor 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502102996|ref|XP_004492171.1| chr2 18860159 18865133 +
1 domain prediction
 –
Lj4g3v2172480.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356564786|ref|XP_003550629.1| chr4 29832503 29837710 +
1 domain prediction
 –
Lj4g3v3056190.1
n.a. PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max] gi|356527769|ref|XP_003532480.1| chr4 40735334 40738911 +
1 domain prediction
 –
Lj4g3v3099320.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356527819|ref|XP_003532504.1| chr4 41236782 41241822 -
1 domain prediction
 –
Lj5g3v1172180.1
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356576487|ref|XP_003556362.1| chr5 18723377 18729742 -
1 domain prediction
 –
Lj5g3v1172180.2
n.a. PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max] gi|356576487|ref|XP_003556362.1| chr5 18725005 18729742 -
1 domain prediction
 –
LotjaGi1g1v0547600.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT5G16180.1 maize chloroplast splicing factor-like protein; Swiss-Prot: sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TrEMBL-Plants: tr|K7MVH3|K7MVH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0547600 LjG1.1_chr1 107763333 107771312 -
1 domain prediction
 –
LotjaGi2g1v0206300.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2RJN1|A0A0B2RJN1_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi2g1v0206300 LjG1.1_chr2 64983064 64990666 +
1 domain prediction
 –
LotjaGi2g1v0251500.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709458 71719279 -
1 domain prediction
 –
LotjaGi2g1v0251500.2
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709458 71719279 -
1 domain prediction
 –
LotjaGi2g1v0251500.3
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709458 71719279 -
1 domain prediction
 –
LotjaGi2g1v0251500.4
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71709823 71719268 -
1 domain prediction
 –
LotjaGi2g1v0251500.5
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHY7|A0A1J7HHY7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0251500 LjG1.1_chr2 71710148 71719356 -
1 domain prediction
 –
LotjaGi2g1v0255900.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 LjG1.1_chr2 72216805 72227819 +
1 domain prediction
 –
LotjaGi2g1v0255900.2
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 LjG1.1_chr2 72216917 72227143 +
1 domain prediction
 –
LotjaGi2g1v0255900.3
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0255900 LjG1.1_chr2 72216928 72227024 +
1 domain prediction
 –
LotjaGi2g1v0256000.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 LjG1.1_chr2 72245714 72249744 +
1 domain prediction
 –
LotjaGi2g1v0256000.2
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G01370.1 CRM family member 2; Swiss-Prot: sp|Q8L7C2|CFM2_ARATH CRM-domain containing factor CFM2, chloroplastic; TrEMBL-Plants: tr|I1N5X8|I1N5X8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256000 LjG1.1_chr2 72245837 72248748 +
1 domain prediction
 –
LotjaGi4g1v0310200.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QCH4|A0A0B2QCH4_GLYSO Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Found in the gene: LotjaGi4g1v0310200 LjG1.1_chr4 68646907 68656505 +
1 domain prediction
 –
LotjaGi4g1v0453100.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|A7XN92|CFM3_MAIZE CRM-domain containing factor CFM3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7L4X1|K7L4X1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453100 LjG1.1_chr4 82508750 82517947 -
1 domain prediction
 –
LotjaGi5g1v0186400.1
n.a. Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; TAIR: AT3G23070.1 CRM family member 3A; Swiss-Prot: sp|F4J2U9|CFM3A_ARATH CRM-domain containing factor CFM3A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T1A4|A0A151T1A4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0186400 LjG1.1_chr5 47347716 47356274 +
1 domain prediction
 –