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| Field | Value |
|---|---|
| Gene ID | LotjaGi0g1v0002200 |
| Transcript ID | LotjaGi0g1v0002200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | translation initiation factor; TAIR: AT2G36885.1 translation initiation factor; Swiss-Prot: sp|Q9UZK7|IF2P_PYRAB Probable translation initiation factor IF-2; TrEMBL-Plants: tr|A0A072VK24|A0A072VK24_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi0g1v0002200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr0:1953431..1955712) extracted from Lotus japonicus Gifu genome v1.2.
CTCATTCTTCAATCTTCACTCGTCGAAATGGCCATGGCTATCTCCTCCGTCAGCGTCGCTCTCCGCCCTCACTTCCCACC TTCTCCGTTTCACTCCCGCCGCTACTCCTTTGCAAAACCCCTCAGGTGCCTCGCAACCAAACAGAACCTTCCCGAAACCC TAGAAATCGAATCCAGACCGAAAAGCGAAACCGTCTTACACTCTTTCTCTCCGTTGCCGTTGCTCTACGCCGCTGCTCTT CTTCCCGGAGGTAGCTAGCTACTTCACTTCAATAATAGCAACACATTTTGATTTTTTCAAATTTTGATTTGATTTGATTT GAAACAGGTGGAGCTGTGAGATCGGTGTTTGCGCCTGTCGTTGAGATTGTGAAGACGTTGAATCTGCCGGAGTGGCTTGT GCATTGGGGTCACCCTGGTAACATGGTAAGCAACACAACTAACTAGCTTTCTGATTTTGTTCTATGTGGAGTTAATAGAA ACAAAGAAAAGAAGGTGCATTGTTGTTGTTGTTGTTGTTGTAATGTGAAATGAATTGGTTTGTTCTCTTGGTTTTGCAGG CGGTTGTGCTCTTTGCAATGGGTGGCTATGGTACCTATCTGGGTTTTCGCATTCGATACTCTGATGATGTGGTATGATAA ATATTCGCTTATAGCTTCTCATTACATAATCCATGTCATCTGAACATAATATAAATTGTTGAAATTGAAAAAAAAATGAG GAACTGATTTTTTTATATTGGATTGAATTGAATTGCTTATAGGTTGGATTGACAAAAGATAAAAAACTGATCAATTTAAA TGGAATGGAAGTTACGTGCGTTTGAACAATGTTAGTTTTGAAATTACTAGGGTGCTCATACTTGTGTAAGTAGATGTGTA TGAAAGACAAATTCATGTCAATTAGTTTTGTCTGTTGTCTTATCTATTTTAAGAAATGTCTCATGATTTTAATGTTATGT ATAAGCTTATTAGTTTTGGACTATTATGAAATTTGTTCTTGTGTCTCTTGTCTCCTTCTATTTTACAAGAAGTTATCTTT AATAAAGCCACAGCTTAAATCAGAACAAAAGTAAACAAATTAATTTGTAACTTAAAAATACGATCTAACATTGTGTTCTC TTTTATTAGAGTTTATTCTATTGTCTCCTAAAAGAAAAACAACTGAAATACCAGTCCAATTGAAACCACATTTAATTATA TTGAATAAGATTAATTGCATTTGAATATAGAACCTAACTGATTAGATGGTAAGATAAGAAAACTGACGAGATAACTTTTT TTCCCTCCTGACTAATTTAATTCAATATGCAAACATCCCTAATTTCCTACCATAACATCTTTTATAACCTTTTACTTGAT TATGTGTAGGAGGAAAAGGCTAAGGCTAAGGACTTGCATCCCAAGCTTTTAGCTGGGATGTTTTTCTTCTTTGCTCTTGG AGCTACCGGTGGAGTAACATCTCTACTCACATCTGATAAACCAATTTTTGAAAGGTAATTAGCACTGTTTTATGGTTGAA GATTAATCTATGTACCGGAACTGATAACATTTGAGATTATGCAGGATGTTAAATTCTACTTTCCTATCCAAGTCTTGTTT ATTCATTTCACTTGCAAATGCAACAATCTTATGCAGGAGCCACTATCTTCTTACATCATTGCATATTCTTTTGTTTTTGC AGTCCTCATGCTGTTACTGGCGCCATTGGCCTTGCTTTGTTGACAGTACAAACTATACTGCCCACACTGTTTGAGGTAAC AGTTGTTTCCTGTGAGCTTGTATTGATTTCCTTTTATCTCTCTAGTTTTTTCGGTTTTTGTTCCTATTGCTTTTGAAATT ATTACTTGCAAATACCCGTTTACACAACTTAACATACGCATCTAACATATAATGAACACTGGTATTTATTTGTGAAATAG AAATGAATTGATAAGTTAATAAACATAACGAGTGTGAGAGTGTATATGTGCAACAAACTACTCAATCACAATCTTGTACT TGAGAAAACTATTGAGAAGCAACTAAACCAAATTGACATTAACAGTAAGAACCAAGCAGCTGAGAATTGAGTCAAAAGCT TTACGTTTTCGATTCATTTATTTTTCATTGCCCCTCCTGTCATTGAACTGGTTACCATTTTTCTCCCCTCGCTTTTAATC ACTTGAATGATATGCAGGGAAATCCTGGACTAAGGAGTGTTCATGGGATCTTGGGTAGTAGTATCATGACACTCTTTCTC ATTCATGCTGCCCTTGGACTTCAATTAGGCCTCAGTTCCTAA
CDS sequence (LotjaGi0g1v0002200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCTATCTCCTCCGTCAGCGTCGCTCTCCGCCCTCACTTCCCACCTTCTCCGTTTCACTCCCGCCGCTACTC CTTTGCAAAACCCCTCAGGTGCCTCGCAACCAAACAGAACCTTCCCGAAACCCTAGAAATCGAATCCAGACCGAAAAGCG AAACCGTCTTACACTCTTTCTCTCCGTTGCCGTTGCTCTACGCCGCTGCTCTTCTTCCCGGAGGTGGAGCTGTGAGATCG GTGTTTGCGCCTGTCGTTGAGATTGTGAAGACGTTGAATCTGCCGGAGTGGCTTGTGCATTGGGGTCACCCTGGTAACAT GGCGGTTGTGCTCTTTGCAATGGGTGGCTATGGTACCTATCTGGGTTTTCGCATTCGATACTCTGATGATGTGGAGGAAA AGGCTAAGGCTAAGGACTTGCATCCCAAGCTTTTAGCTGGGATGTTTTTCTTCTTTGCTCTTGGAGCTACCGGTGGAGTA ACATCTCTACTCACATCTGATAAACCAATTTTTGAAAGTCCTCATGCTGTTACTGGCGCCATTGGCCTTGCTTTGTTGAC AGTACAAACTATACTGCCCACACTGTTTGAGGGAAATCCTGGACTAAGGAGTGTTCATGGGATCTTGGGTAGTAGTATCA TGACACTCTTTCTCATTCATGCTGCCCTTGGACTTCAATTAGGCCTCAGTTCCTAA
Protein sequence (LotjaGi0g1v0002200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAISSVSVALRPHFPPSPFHSRRYSFAKPLRCLATKQNLPETLEIESRPKSETVLHSFSPLPLLYAAALLPGGGAVRS VFAPVVEIVKTLNLPEWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAKAKDLHPKLLAGMFFFFALGATGGV TSLLTSDKPIFESPHAVTGAIGLALLTVQTILPTLFEGNPGLRSVHGILGSSIMTLFLIHAALGLQLGLSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 64 | 64 | - | – | |
| PANTHER | 32 | 230 | 199 | 9.0E-112 | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 65 | 85 | 21 | - | – | |
| Phobius | 86 | 104 | 19 | - | – | |
| Pfam | 99 | 229 | 131 | 3.2E-22 | ||
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 105 | 123 | 19 | - | – | |
| Phobius | 124 | 143 | 20 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 144 | 164 | 21 | - | – | |
| Phobius | 165 | 175 | 11 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 176 | 196 | 21 | - | – | |
| Phobius | 197 | 207 | 11 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 208 | 229 | 22 | - | – | |
| Phobius | 230 | 231 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi0g1v0002200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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