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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0007900 |
| Transcript ID | LotjaGi1g1v0007900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2SI74|A0A0B2SI74_GLYSO DAZ-associated protein 1; Found in the gene: LotjaGi1g1v0007900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1051536..1053492) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAATCTGATAATGGAAAATTATTTATTGGTGGAATATCGTGGGACACAACTGAAGAGCGACTCCGGGAGTATTTCAG TGCTTATGGTGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACGACGGGTAGAGCCCGTGGATTTGGTTTTGTTGTTT TCTCTGACCCAGCCGTTGCGGACATAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTAATTTATTGCCATCTC TTCTCTTAAGTCCAACATTAGCATTCTTACATTATGGTTCTCCTTTTGAATTATATGACATCAGGGTTCTTATTGCCGAG TTTATGGTTCTCCTTTTGAATTATATGACATCAGGGTTCTTATTGCCGAGGTTCTTTGTGCTGAATTGTAATTTGATTTG CAAAATTTGTTCTATTCTCAATATTTTCTTAGCTAGATGGTAAAATGGACCAATCATAATTCTCTTATGCATTTGATATT ATCTAATCTTATCTGCTTTTCATTCATTATCTTCCTTTCTAGGCATCCGTTGTTAGGATTGATCGGTCTTCATTTCTTTT TCCTCTTTGATTTATAGTCAATGCTGTTGCTTCTATACTAGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGACC GTACTGAGTAGAAACAGTGGCAGCATCCACGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGC ATCAACAGTGACAGAGAGCGATTTCAAGAAGTACTTCGATCAGTTTGGGACTATAACAGATGTTGTAGTGATGTATGATC ACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAGGCTGTTGACAAGGTCTTACTGAAGACA TTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCTAGCCGCAGTCC ACTTGGTGGATACAGCTATGGTCTGAATAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGTTATACTCCAAATACTG TTGGAGGCTATGGACTTCGGATGGATGGTAGATTCAGTCCAGTTGCCGGTGGTCGAAGTGGATTTGCTCCACTTGGATCT GGTTATGGGATGAATCTGAATTTTGAGCCTGGTTTGACTGCTGGATTTGGGGGGAATGCAAATTTCAACAGCAATGTTAG CTATGGTCGGGGATTGAATCCCTACTTTGTTGGAAGTTCCAATAGGTATGGCAGTCCTGTTGGATATGAAAGTAGTAATG GAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAATTATGGAACAAGTTCTGCA AATTCCAATGCATACATTGGATCTGGGAGTGGGAGTGTTGGAGGAAACACATTTGGCAATACTGGAGTCAACTGGGGTTC TTCACCAATATCTGGGCACGGAGGAGGGAACAATGTATCACAGAATAGTGGCAACCTTGGATATGGAGGTGGTGACAACA GTTACGGTTTGGGGACTGGAGGGTACGGAAGAAGCAGTGGTACCACTCTTGCACCAACATCTTCATATTCTGCATCAAAT GGTGGTGTTGATGGGGCTTTTTCTGACTTTTACAATAACAATTCAGTCTATGGGGACCCCACTTGGCGATCTTCAAATTC TGAGCGAGATGGATCTGGCCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGAGTTCACCTGGTT ATGTTGGTGGTTATACAGTTAACAAAAGACAGCCAAATAGGGGTAAGAGCAACCTTACTCATCTTAACTTCTCTTTCAGT CTCCTCTGGGAGTCTTGAACAATAGTGGTCTTGAACAATAGTGTGATTTTATTGCATTTGCACAGTATAAGTCTTGAACA ATAGTGTTATTTTATTGCATTTGCATAGTATAACTAG
CDS sequence (LotjaGi1g1v0007900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCTGATAATGGAAAATTATTTATTGGTGGAATATCGTGGGACACAACTGAAGAGCGACTCCGGGAGTATTTCAG TGCTTATGGTGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACGACGGGTAGAGCCCGTGGATTTGGTTTTGTTGTTT TCTCTGACCCAGCCGTTGCGGACATAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCGAAGAAAGCT GTTCCTAGGGATGATCAGACCGTACTGAGTAGAAACAGTGGCAGCATCCACGGTTCTCCTGGTCCAGGTCGCACAAGAAA GATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGCGATTTCAAGAAGTACTTCGATCAGTTTGGGACTATAACAG ATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAGGCTGTT GACAAGGTCTTACTGAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATC GCCAGGACCTAGCCGCAGTCCACTTGGTGGATACAGCTATGGTCTGAATAGGGTCAATAGTTTCTTAAATGGCTTCACTC AGGGTTATACTCCAAATACTGTTGGAGGCTATGGACTTCGGATGGATGGTAGATTCAGTCCAGTTGCCGGTGGTCGAAGT GGATTTGCTCCACTTGGATCTGGTTATGGGATGAATCTGAATTTTGAGCCTGGTTTGACTGCTGGATTTGGGGGGAATGC AAATTTCAACAGCAATGTTAGCTATGGTCGGGGATTGAATCCCTACTTTGTTGGAAGTTCCAATAGGTATGGCAGTCCTG TTGGATATGAAAGTAGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTT AATTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCTGGGAGTGGGAGTGTTGGAGGAAACACATTTGGCAA TACTGGAGTCAACTGGGGTTCTTCACCAATATCTGGGCACGGAGGAGGGAACAATGTATCACAGAATAGTGGCAACCTTG GATATGGAGGTGGTGACAACAGTTACGGTTTGGGGACTGGAGGGTACGGAAGAAGCAGTGGTACCACTCTTGCACCAACA TCTTCATATTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTTCTGACTTTTACAATAACAATTCAGTCTATGGGGACCC CACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCTGGCCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTT CTGCCAAGAGTTCACCTGGTTATGTTGGTGGTTATACAGTTAACAAAAGACAGCCAAATAGGGTATAA
Protein sequence (LotjaGi1g1v0007900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEKHNIDGRMVEAKKA VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV DKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS GFAPLGSGYGMNLNFEPGLTAGFGGNANFNSNVSYGRGLNPYFVGSSNRYGSPVGYESSNGGNNSFFSSVTRNLWGNGGL NYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSPISGHGGGNNVSQNSGNLGYGGGDNSYGLGTGGYGRSSGTTLAPT SSYSASNGGVDGAFSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 91 | 91 | 4.9E-26 | ||
| SUPERFAMILY | 3 | 104 | 102 | 4.16E-27 | ||
| ProSiteProfiles | 6 | 82 | 77 | 17.66 | ||
| SMART | 7 | 78 | 72 | 2.2E-24 | ||
| Pfam | 8 | 69 | 62 | 1.1E-15 | ||
| CDD | 8 | 78 | 71 | 2.71897E-38 | – | |
| PANTHER | 13 | 299 | 287 | 1.9E-160 | – | |
| PANTHER | 13 | 299 | 287 | 1.9E-160 | – | |
| MobiDBLite | 82 | 101 | 20 | - | – | |
| Gene3D | 103 | 181 | 79 | 9.5E-26 | ||
| CDD | 104 | 183 | 80 | 1.92266E-47 | ||
| SUPERFAMILY | 105 | 193 | 89 | 2.42E-26 | ||
| ProSiteProfiles | 106 | 183 | 78 | 17.677 | ||
| SMART | 107 | 179 | 73 | 8.6E-24 | ||
| Pfam | 108 | 165 | 58 | 9.4E-16 | ||
| MobiDBLite | 426 | 475 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0007900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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