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cd12327

Source: CDD

Description

RRM2_DAZAP1

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Associated Lotus transcripts 17

Transcript Name Description Predicted domains Domain count
Lj0g3v0236079.1
– PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Cicer arietinum] gi|502079656|ref|XP_004486327.1|
Domains
12
Lj0g3v0310849.1
– PREDICTED: RNA-binding protein Musashi homolog 2-like [Glycine max] gi|356576454|ref|XP_003556346.1|
Domains
12
Lj2g3v3234600.1
– PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cicer arietinum] gi|502146959|ref|XP_004506674.1|
Domains
16
Lj2g3v3234600.2
– PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cicer arietinum] gi|502146959|ref|XP_004506674.1|
Domains
16
Lj2g3v3234600.3
– Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula] gi|357459939|ref|XP_003600251.1|
Domains
16
Lj2g3v3339010.1
– PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cicer arietinum] gi|502099919|ref|XP_004491591.1|
Domains
12
Lj6g3v0802280.1
– PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cicer arietinum] gi|502146959|ref|XP_004506674.1|
Domains
12
LotjaGi1g1v0007900.1
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2SI74|A0A0B2SI74_GLYSO DAZ-associated protein 1; Found in the gene: LotjaGi1g1v0007900
Domains
14
LotjaGi1g1v0007900.2
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2SI74|A0A0B2SI74_GLYSO DAZ-associated protein 1; Found in the gene: LotjaGi1g1v0007900
Domains
14
LotjaGi1g1v0021200.1
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2QW64|A0A0B2QW64_GLYSO RNA-binding protein Musashi like Rbp6; Found in the gene: LotjaGi1g1v0021200
Domains
14
LotjaGi1g1v0021200.2
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2QW64|A0A0B2QW64_GLYSO RNA-binding protein Musashi like Rbp6; Found in the gene: LotjaGi1g1v0021200
Domains
14
LotjaGi1g1v0021200.3
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|A0A0B2QW64|A0A0B2QW64_GLYSO RNA-binding protein Musashi like Rbp6; Found in the gene: LotjaGi1g1v0021200
Domains
14
LotjaGi5g1v0158700.1
– RNA-binding protein-like; TAIR: AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I1NI06|I1NI06_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0158700
Domains
14
LotjaGi6g1v0149600_LC.1
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|V7BNH4|V7BNH4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0149600_LC
Domains
14
LotjaGi6g1v0149600_LC.3
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|V7BNH4|V7BNH4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0149600_LC
Domains
14
LotjaGi6g1v0149600_LC.5
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|V7BNH4|V7BNH4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0149600_LC
Domains
14
LotjaGi6g1v0285100.1
– RNA-binding protein, putative; TAIR: AT3G07810.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|G7IP95|G7IP95_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi6g1v0285100
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.88