Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0008400.3

Overview

Field	Value
Gene ID	LotjaGi1g1v0008400
Transcript ID	LotjaGi1g1v0008400.3
Related isoforms 2	LotjaGi1g1v0008400.1 LotjaGi1g1v0008400.2
Lotus japonicus genome version	Gifu v1.2
Description	GRAS family transcription factor; TAIR: AT5G48150.1 GRAS family transcription factor; Swiss-Prot: sp\|Q9LDL7\|PAT1_ARATH Scarecrow-like transcription factor PAT1; TrEMBL-Plants: tr\|V7BDE6\|V7BDE6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0008400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:1099758..1101741) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACCATCAACAGTTGCAACAGATTGAAGCCTACAACTTGCCGCA GTATCGAACCCTGAATCATCAGCTATACTACAATGATGGAGGCCAATTCTCCACTCCAAGTTCTTCTGAACTTTACTGCA CATTGGAGTCATCATCTGCAACTGGAAGCTTCACTGTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGC CCAATATCACAGCAAGATTCTCAGTCATATTCATATCCACCTGAACAGTATCATTCCCCTGACAACAACTATGGCTCTCC GATGAGTGGATCTTGCATAACCGATGATGTAAGTAGCTTCAAGCACAAGCTGAGAGAGTTAGAAAGTGTAATGCTTGGCC CTGACTCTGATAACATTGATAGTTATGACAGTGCTATTAGCAATGCAACCAACTTTGTTTCACTTGAGATGGACAGTTGG AGACAAACAATGGTAGCAATTTCTACTAAAAACCTGAAGCACATCCTTATTGCATGTGCCAAAGCAATTGCAGACAACGA TTTGCTAATGGGGCAATGGCTTATGGATGAATTGCGGCAGATGGTGTCAGTTTCTGGCGAACCGGTTCAGAGGTTGGGAG CATACATGCTAGAAGGACTTGTTGCGCGATTGTCCGCATCCGGGAGTTCAATCTACAAAGCTTTGAGGTGCAAAGAACCA GAAAGTTCTGAGCTTCTCTCCTACATGCACATACTTTATGAGGTTTGCCCCTACTTCAAGTTTGGATACATGTCTGCCAA TGGAGCCATTGCAGAAGCGATGAAAGATGAAGATAGAGTCCATATAATTGATTTCCAAATTGCACAAGGAAGCCAGTGGA TCACTTTGATTCAGGCTTTTGCAGCTAGGCCTGGGGGACCACCCCACATCCGAATTACAGGTATTCAAGGACGGACCTAG GTTGATAGGAAATGGGGCAGATTGCCTCCTCCAATTAGTCATTGTTGATTTTTTTGGGCTTGTTTGATTCTCTTCTCAGT TTTCTGAATTTAAAAACTATTTTCAGAAGAAAATAAAGGAAAAACAGTTTGAATTAGATGTTTTGCAAAGTTTAAAGAGA GAGATGTTTTGAGTTTTAAAAACTGAAAATAAGAACTGTTTTGAAAAACTTTTTGTATCAAACAAGTTTTCCTGTTTTTA AAAACTGATTCACAAAATAATAATCAAACAGACCCTTTACTTTTATGTGTTAAATTTTCGCGGCTTACCAATATTTTCTG GTTCCGTCCCTTCAGGTATTGATGATTCAACATCAGCTTATGCCCGCGGAGGGGGACTACACATTGTGGGAAAGAGGTTA TCAAAGCTTGCTCAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATCTCTGGTTGTGATGTTCAACTGCATAA CCTTGGAGTTAGACAAGGCGAAGCTCTTGCTGTAAATTTTGCATTCATGCTGCATCACATGCCGGACGAAAGTGTCAGCA CTCAGAATCATAGGGACAGGCTGTTGAGGTTGGTTAAGAGCCTATCACCAAAGGTGGTGACACTTGTTGAGCAAGAATCC AACACAAACACTGCTGCGTTCTTTCCACGTTTTCTTGAAACTCTGGAGTATTACACAGCAATGTTTGAATCAATAGATGT TACTCTCCCTAGAGAGCATAAAGAGAGAATCAATGTGGAGCAGCATTGCTTGGCAAGGGACTTGGTTAACATCATAGCTT GTGAAGGGGTTGAGAGAGTGGAGCGACACGAGGTACTTGGGAAGTGGAGGTCAAGATTTGCAATGGCTGGTTTCACTCCT TACCCATTGAGTTCATTGGTGAATGGCACAATAAAGAAACTGCTTGAGAACTACAGTGATAGATATAGACTTGTAGAGAG AGATGGTGCTCTATACCTGGGTTGGATGAATAGAGATTTGGTTGCTTCATGTGCATGGAAATGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0008400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACCATCAACAGTTGCAACAGATTGAAGCCTACAACTTGCCGCA GTATCGAACCCTGAATCATCAGCTATACTACAATGATGGAGGCCAATTCTCCACTCCAAGTTCTTCTGAACTTTACTGCA CATTGGAGTCATCATCTGCAACTGGAAGCTTCACTGTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGC CCAATATCACAGCAAGATTCTCAGTCATATTCATATCCACCTGAACAGTATCATTCCCCTGACAACAACTATGGCTCTCC GATGAGTGGATCTTGCATAACCGATGATGTAAGTAGCTTCAAGCACAAGCTGAGAGAGTTAGAAAGTGTAATGCTTGGCC CTGACTCTGATAACATTGATAGTTATGACAGTGCTATTAGCAATGCAACCAACTTTGTTTCACTTGAGATGGACAGTTGG AGACAAACAATGGTAGCAATTTCTACTAAAAACCTGAAGCACATCCTTATTGCATGTGCCAAAGCAATTGCAGACAACGA TTTGCTAATGGGGCAATGGCTTATGGATGAATTGCGGCAGATGGTGTCAGTTTCTGGCGAACCGGTTCAGAGGTTGGGAG CATACATGCTAGAAGGACTTGTTGCGCGATTGTCCGCATCCGGGAGTTCAATCTACAAAGCTTTGAGGTGCAAAGAACCA GAAAGTTCTGAGCTTCTCTCCTACATGCACATACTTTATGAGGTTTGCCCCTACTTCAAGTTTGGATACATGTCTGCCAA TGGAGCCATTGCAGAAGCGATGAAAGATGAAGATAGAGTCCATATAATTGATTTCCAAATTGCACAAGGAAGCCAGTGGA TCACTTTGATTCAGGCTTTTGCAGCTAGGCCTGGGGGACCACCCCACATCCGAATTACAGGTATTGATGATTCAACATCA GCTTATGCCCGCGGAGGGGGACTACACATTGTGGGAAAGAGGTTATCAAAGCTTGCTCAGCATTTTAAGGTGCCATTTGA ATTTCATGCTGCAGCTATCTCTGGTTGTGATGTTCAACTGCATAACCTTGGAGTTAGACAAGGCGAAGCTCTTGCTGTAA ATTTTGCATTCATGCTGCATCACATGCCGGACGAAAGTGTCAGCACTCAGAATCATAGGGACAGGCTGTTGAGGTTGGTT AAGAGCCTATCACCAAAGGTGGTGACACTTGTTGAGCAAGAATCCAACACAAACACTGCTGCGTTCTTTCCACGTTTTCT TGAAACTCTGGAGTATTACACAGCAATGTTTGAATCAATAGATGTTACTCTCCCTAGAGAGCATAAAGAGAGAATCAATG TGGAGCAGCATTGCTTGGCAAGGGACTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGAGTGGAGCGACACGAGGTA CTTGGGAAGTGGAGGTCAAGATTTGCAATGGCTGGTTTCACTCCTTACCCATTGAGTTCATTGGTGAATGGCACAATAAA GAAACTGCTTGAGAACTACAGTGATAGATATAGACTTGTAGAGAGAGATGGTGCTCTATACCTGGGTTGGATGAATAGAG ATTTGGTTGCTTCATGTGCATGGAAATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0008400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQASEQHRSSSMYHQQLQQIEAYNLPQYRTLNHQLYYNDGGQFSTPSSSELYCTLESSSATGSFTVYNSPSTVSFSPNGS PISQQDSQSYSYPPEQYHSPDNNYGSPMSGSCITDDVSSFKHKLRELESVMLGPDSDNIDSYDSAISNATNFVSLEMDSW RQTMVAISTKNLKHILIACAKAIADNDLLMGQWLMDELRQMVSVSGEPVQRLGAYMLEGLVARLSASGSSIYKALRCKEP ESSELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTS AYARGGGLHIVGKRLSKLAQHFKVPFEFHAAAISGCDVQLHNLGVRQGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLV KSLSPKVVTLVEQESNTNTAAFFPRFLETLEYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEV LGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLVERDGALYLGWMNRDLVASCAWK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31636:SF185 View details on PTHR31636:SF185 Search for proteins/transripts with this domain View external data on PTHR31636:SF185	17	542	526	1.3E-290	–
PANTHER	PTHR31636 View details on PTHR31636 Search for proteins/transripts with this domain View external data on PTHR31636	17	542	526	1.3E-290	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	75	108	34	-	–
ProSiteProfiles	PS50985 View details on PS50985 Search for proteins/transripts with this domain View external data on PS50985	163	542	380	101.198	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03514 View details on PF03514 Search for proteins/transripts with this domain View external data on PF03514	172	542	371	1.7E-136	IPR005202 Show description in modal box View details on IPR005202 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0008400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…