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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0037800 |
Transcript ID | LotjaGi1g1v0037800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA/RNA-binding protein KIN17; TAIR: AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region; Swiss-Prot: sp|Q9ZVU5|KIN17_ARATH KIN17-like protein; TrEMBL-Plants: tr|A0A151U225|A0A151U225_CAJCA DNA/RNA-binding protein KIN17; Found in the gene: LotjaGi1g1v0037800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5275492..5276688) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAAAAATGAGTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGATGGTA TTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGTTTTAAATGCCACTGCATGAGCGAAGGACACCAGCGCCAAA TGCAAGTTTTTGGACAAAACCCGACTCGGATAATTGAGGGCTATTCTGAAGAGTTTGAGAAATCTTTCCTTGAGCACATG AAGCGTAGCCACCGATTCAGCCGCATTGCTGCCACCGTAGTTTATAATGAATACATAAATGATAGACATCATGTTCATAT GAACTCCACTGAGTGGGCTACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAGTGTAAGGTTGATGAAACAC CCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAG GCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCATGAAACAGATTGAAAAGGCTGCGCAATTGATGCAACCACC TAATTCTGACCCTGATCAACCTTCACTAGTTGAGCCTCCGAGGGAACTAAATGTAGAAGATGGAGTTAAGATAGGATTTT CTCTTGGGTCCTTGGCTAGACCTGGGACCAAGGAAAAACCCGAGGCATCGAGGGTGGCGTTTGATGAGGTTGGCGAAGAG AAATATGAGGAAATAAATAATGGAAACAATTTGAAGAGGAAAGGAAGTGGTGGTGGAAAATCAACTTTGGATGAATTGAT GAGGGATGAAGAGAAGAAAAAAGAAAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAACTGTTGTTAAGGTTATGA GCAAGGCCTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGCGTTGTGCGAAAGGTGATTGACAAGTATGTTGGGGAAATA GAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAACTTGAAACTGTGATTCCACAAGTCGGGGGCCGTGT AAAAATAGTCAATGGGGCATATCGTGGATCACTTGCTAGGCTGCTGGGGGTGGATACAGAACATTTTTGCGCTAAGGTGC AGATAGAGAAAGGTCCCTATGAAGGTAGGGTACTTAAAGCTGTGGAATACGAGGACATTTGCAAAGTAGCCCAGTGA
CDS sequence (LotjaGi1g1v0037800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAAATGAGTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGATGGTA TTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGTTTTAAATGCCACTGCATGAGCGAAGGACACCAGCGCCAAA TGCAAGTTTTTGGACAAAACCCGACTCGGATAATTGAGGGCTATTCTGAAGAGTTTGAGAAATCTTTCCTTGAGCACATG AAGCGTAGCCACCGATTCAGCCGCATTGCTGCCACCGTAGTTTATAATGAATACATAAATGATAGACATCATGTTCATAT GAACTCCACTGAGTGGGCTACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAGTGTAAGGTTGATGAAACAC CCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAG GCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCATGAAACAGATTGAAAAGGCTGCGCAATTGATGCAACCACC TAATTCTGACCCTGATCAACCTTCACTAGTTGAGCCTCCGAGGGAACTAAATGTAGAAGATGGAGTTAAGATAGGATTTT CTCTTGGGTCCTTGGCTAGACCTGGGACCAAGGAAAAACCCGAGGCATCGAGGGTGGCGTTTGATGAGGTTGGCGAAGAG AAATATGAGGAAATAAATAATGGAAACAATTTGAAGAGGAAAGGAAGTGGTGGTGGAAAATCAACTTTGGATGAATTGAT GAGGGATGAAGAGAAGAAAAAAGAAAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAACTGTTGTTAAGGTTATGA GCAAGGCCTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGCGTTGTGCGAAAGGTGATTGACAAGTATGTTGGGGAAATA GAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAACTTGAAACTGTGATTCCACAAGTCGGGGGCCGTGT AAAAATAGTCAATGGGGCATATCGTGGATCACTTGCTAGGCTGCTGGGGGTGGATACAGAACATTTTTGCGCTAAGGTGC AGATAGAGAAAGGTCCCTATGAAGGTAGGGTACTTAAAGCTGTGGAATACGAGGACATTTGCAAAGTAGCCCAGTGA
Protein sequence (LotjaGi1g1v0037800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQVFGQNPTRIIEGYSEEFEKSFLEHM KRSHRFSRIAATVVYNEYINDRHHVHMNSTEWATLTEFVKYLGRTGKCKVDETPKGWFITYIDRDSETLFKERMKNKRIK ADMADEEKQEKEIMKQIEKAAQLMQPPNSDPDQPSLVEPPRELNVEDGVKIGFSLGSLARPGTKEKPEASRVAFDEVGEE KYEEINNGNNLKRKGSGGGKSTLDELMRDEEKKKEKMNRKDYWLHEGTVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEI EMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSLARLLGVDTEHFCAKVQIEKGPYEGRVLKAVEYEDICKVAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 396 | 396 | 1.2E-178 | ||
SUPERFAMILY | 26 | 66 | 41 | 4.46E-6 | ||
SMART | 52 | 178 | 127 | 2.4E-81 | ||
Pfam | 52 | 177 | 126 | 4.0E-48 | ||
Gene3D | 60 | 160 | 101 | 1.7E-43 | ||
Coils | 156 | 183 | 28 | - | – | |
Coils | 260 | 280 | 21 | - | – | |
Pfam | 279 | 332 | 54 | 9.8E-23 | ||
Gene3D | 288 | 340 | 53 | 4.0E-23 | – | |
Gene3D | 341 | 397 | 57 | 4.4E-25 | ||
CDD | 343 | 396 | 54 | 4.68805E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0037800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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