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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014722
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 90 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.942s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0038609.1
n.a. PREDICTED: 60S ribosomal protein L8-like [Cicer arietinum] gi|502161332|ref|XP_004512125.1| chr0 12545665 12545898 +
2 domain predictions
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Lj0g3v0164819.1
n.a. PREDICTED: 60S ribosomal protein L26-1-like [Glycine max] gi|356555056|ref|XP_003545855.1| chr0 78148520 78149117 -
2 domain predictions
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Lj0g3v0237799.1
n.a. PREDICTED: elongation factor P-like [Cicer arietinum] gi|502134670|ref|XP_004502202.1| chr0 123290247 123290996 -
2 domain predictions
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Lj0g3v0272389.1
n.a. PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Cicer arietinum] gi|502083995|ref|XP_004487627.1| chr0 141138719 141141802 -
2 domain predictions
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Lj0g3v0333779.1
n.a. Plastid transcriptionally active isoform 1 [Theobroma cacao] gi|508715430|gb|EOY07327.1| chr0 174698388 174701565 -
2 domain predictions
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Lj0g3v0353419.1
n.a. Global transcription factor group [Medicago truncatula] gi|357463691|ref|XP_003602127.1| chr0 186016612 186021980 -
2 domain predictions
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Lj1g3v0536740.1
n.a. eukaryotic translation initiation factor 5A3 [Glycine max] gi|351721220|ref|NP_001237458.1| chr1 6680877 6683954 +
2 domain predictions
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Lj1g3v1219000.1
n.a. PREDICTED: 60S ribosomal protein L6-3-like isoform X2 [Cicer arietinum] gi|502140013|ref|XP_004504017.1| chr1 14816821 14818776 +
2 domain predictions
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Lj1g3v2482390.1
n.a. PREDICTED: elongation factor P-like [Cicer arietinum] gi|502104488|ref|XP_004492556.1| chr1 28757124 28758650 +
2 domain predictions
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Lj1g3v2482390.2
n.a. PREDICTED: elongation factor P-like [Cicer arietinum] gi|502104488|ref|XP_004492556.1| chr1 28757124 28760450 +
2 domain predictions
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Lj1g3v3028300.1
n.a. PREDICTED: 50S ribosomal protein L24-like isoform X1 [Cicer arietinum] gi|502082834|ref|XP_004487287.1| chr1 34696567 34698797 +
2 domain predictions
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Lj2g3v1705410.1
n.a. PREDICTED: 60S ribosomal protein L8-like [Cicer arietinum] gi|502161332|ref|XP_004512125.1| chr2 26303210 26304681 +
2 domain predictions
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Lj2g3v1968310.1
n.a. Translation protein SH3-like family protein [Theobroma cacao] gi|508717912|gb|EOY09809.1| chr2 28657184 28658140 -
2 domain predictions
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Lj3g3v0882650.1
n.a. PREDICTED: 60S ribosomal protein L6-3-like isoform X2 [Cicer arietinum] gi|502140013|ref|XP_004504017.1| chr3 10728615 10731426 -
2 domain predictions
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Lj4g3v1108280.1
n.a. PREDICTED: 60S ribosomal protein L8-like [Cicer arietinum] gi|502161332|ref|XP_004512125.1| chr4 16643467 16643700 +
2 domain predictions
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Lj4g3v1260340.1
n.a. PREDICTED: 60S ribosomal protein L27-like [Cicer arietinum] gi|502076821|ref|XP_004485468.1| chr4 18568085 18568679 +
2 domain predictions
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Lj4g3v1683090.1
n.a. PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cicer arietinum] gi|502126980|ref|XP_004499516.1| chr4 24344994 24347366 -
2 domain predictions
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Lj4g3v1983490.1
n.a. PREDICTED: eukaryotic translation initiation factor 5A-2-like [Cicer arietinum] gi|502149980|ref|XP_004507734.1| chr4 27602224 27604200 +
2 domain predictions
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Lj4g3v2313650.1
n.a. KOW domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297821761|ref|XP_002878763.1| chr4 32270649 32271532 +
2 domain predictions
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Lj4g3v2691780.1
n.a. PREDICTED: 60S ribosomal protein L27-like [Cucumis sativus] gi|449460010|ref|XP_004147739.1| chr4 36241139 36241306 -
2 domain predictions
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Lj5g3v0122140.1
n.a. glycoprotein-like protein [Solanum tuberosum] gi|76161008|gb|ABA40467.1| chr5 1360773 1362202 -
2 domain predictions
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Lj5g3v1176940.1
n.a. glycoprotein-like protein [Solanum tuberosum] gi|76161008|gb|ABA40467.1| chr5 19070890 19072319 +
2 domain predictions
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Lj6g3v0003450.1
n.a. PREDICTED: probable 60S ribosomal protein L14-like [Glycine max] gi|356502499|ref|XP_003520056.1| chr6 236976 238409 -
2 domain predictions
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Lj6g3v1879910.1
n.a. PREDICTED: eukaryotic translation initiation factor 5A-2-like [Vitis vinifera] gi|359491680|ref|XP_003634303.1| chr6 20600456 20600995 +
2 domain predictions
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LotjaGi1g1v0037800.1
n.a. DNA/RNA-binding protein KIN17; TAIR: AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region; Swiss-Prot: sp|Q9ZVU5|KIN17_ARATH KIN17-like protein; TrEMBL-Plants: tr|A0A151U225|A0A151U225_CAJCA DNA/RNA-binding protein KIN17; Found in the gene: LotjaGi1g1v0037800 LjG1.1_chr1 5273762 5277563 +
2 domain predictions
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LotjaGi1g1v0037800.2
n.a. DNA/RNA-binding protein KIN17; TAIR: AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region; Swiss-Prot: sp|Q9ZVU5|KIN17_ARATH KIN17-like protein; TrEMBL-Plants: tr|A0A151U225|A0A151U225_CAJCA DNA/RNA-binding protein KIN17; Found in the gene: LotjaGi1g1v0037800 LjG1.1_chr1 5275492 5276688 +
2 domain predictions
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LotjaGi1g1v0074400.1
n.a. 40S ribosomal protein S4; TAIR: AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1; TrEMBL-Plants: tr|A0A0S3R4D4|A0A0S3R4D4_PHAAN 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0074400 LjG1.1_chr1 10743376 10746263 -
2 domain predictions
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LotjaGi1g1v0074400.2
n.a. 40S ribosomal protein S4; TAIR: AT5G07090.2 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1; TrEMBL-Plants: tr|A0A0R4J5K4|A0A0R4J5K4_SOYBN 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0074400 LjG1.1_chr1 10744334 10745972 -
2 domain predictions
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LotjaGi1g1v0074400.3
n.a. 40S ribosomal protein S4; TAIR: AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1; TrEMBL-Plants: tr|A0A0L9UWB5|A0A0L9UWB5_PHAAN 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0074400 LjG1.1_chr1 10744334 10746012 -
2 domain predictions
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LotjaGi1g1v0193500.1
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT1G69410.1 eukaryotic elongation factor 5A-3; Swiss-Prot: sp|P24922|IF5A2_NICPL Eukaryotic translation initiation factor 5A-2; TrEMBL-Plants: tr|I3SDR1|I3SDR1_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi1g1v0193500 LjG1.1_chr1 38302068 38305750 +
2 domain predictions
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LotjaGi1g1v0273000.1
n.a. Transcription elongation factor SPT5; TAIR: AT4G08350.1 global transcription factor group A2; Swiss-Prot: sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1; TrEMBL-Plants: tr|I1JYX6|I1JYX6_SOYBN Transcription elongation factor SPT5; Found in the gene: LotjaGi1g1v0273000 LjG1.1_chr1 66918194 66926070 +
2 domain predictions
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LotjaGi1g1v0312000.1
n.a. 60S ribosomal L6-like protein; TAIR: AT1G74050.1 Ribosomal protein L6 family protein; Swiss-Prot: sp|P34091|RL6_MESCR 60S ribosomal protein L6; TrEMBL-Plants: tr|B7FH28|B7FH28_MEDTR 60S ribosomal L6-like protein; Found in the gene: LotjaGi1g1v0312000 LjG1.1_chr1 75611088 75612783 +
2 domain predictions
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LotjaGi1g1v0445300.1
n.a. 40S ribosomal protein S4; TAIR: AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|P49204|RS42_ARATH 40S ribosomal protein S4-2; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300 LjG1.1_chr1 94384485 94387185 +
2 domain predictions
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LotjaGi1g1v0445300.2
n.a. 40S ribosomal protein S4; TAIR: AT5G07090.2 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300 LjG1.1_chr1 94385314 94386747 +
2 domain predictions
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LotjaGi1g1v0445300.3
n.a. 40S ribosomal protein S4; TAIR: AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein; Swiss-Prot: sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3; TrEMBL-Plants: tr|G7JLT2|G7JLT2_MEDTR 40S ribosomal protein S4; Found in the gene: LotjaGi1g1v0445300 LjG1.1_chr1 94385354 94386747 +
2 domain predictions
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LotjaGi1g1v0456600.1
n.a. Elongation factor P; TAIR: AT3G08740.1 elongation factor P (EF-P) family protein; Swiss-Prot: sp|Q54760|EFP_SYNE7 Elongation factor P; TrEMBL-Plants: tr|I3T3T8|I3T3T8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0456600 LjG1.1_chr1 96002274 96005960 +
2 domain predictions
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LotjaGi1g1v0474100.1
n.a. 50S ribosomal protein L2; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A1J7GHV1|A0A1J7GHV1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0474100 LjG1.1_chr1 98446755 98449633 +
2 domain predictions
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LotjaGi1g1v0516200.1
n.a. 50S ribosomal protein L24; TAIR: AT5G23535.1 KOW domain-containing protein; Swiss-Prot: sp|Q47LK4|RL24_THEFY 50S ribosomal protein L24; TrEMBL-Plants: tr|I3S275|I3S275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0516200 LjG1.1_chr1 103878364 103881394 -
2 domain predictions
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LotjaGi1g1v0516200.2
n.a. 50S ribosomal protein L24; TAIR: AT5G23535.1 KOW domain-containing protein; Swiss-Prot: sp|Q47LK4|RL24_THEFY 50S ribosomal protein L24; TrEMBL-Plants: tr|I3S275|I3S275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0516200 LjG1.1_chr1 103879346 103881108 -
2 domain predictions
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LotjaGi2g1v0005300.1
n.a. 50S ribosomal protein L2; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|Q42064|RL83_ARATH 60S ribosomal protein L8-3; TrEMBL-Plants: tr|V7CDF5|V7CDF5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0005300 LjG1.1_chr2 1864948 1865857 +
2 domain predictions
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LotjaGi2g1v0246000_LC.1
n.a. 60S ribosomal protein L26; TAIR: AT3G49910.1 Translation protein SH3-like family protein; Swiss-Prot: sp|P51414|RL261_ARATH 60S ribosomal protein L26-1; TrEMBL-Plants: tr|A0A151T7I3|A0A151T7I3_CAJCA 60S ribosomal protein L26-1; Found in the gene: LotjaGi2g1v0246000_LC LjG1.1_chr2 71131019 71131368 +
2 domain predictions
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LotjaGi2g1v0280900.1
n.a. 50S ribosomal protein L2, chloroplastic; TAIR: ATCG00830.1 ribosomal protein L2 (ChrC); Swiss-Prot: sp|Q9B1H9|RK2_LOTJA 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|G1D799|G1D799_RICCO 50S ribosomal protein L2, chloroplastic; Found in the gene: LotjaGi2g1v0280900 LjG1.1_chr2 75268101 75268937 +
2 domain predictions
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LotjaGi2g1v0280900.2
n.a. 50S ribosomal protein L2; TAIR: ATCG00830.1 ribosomal protein L2 (ChrC); Swiss-Prot: sp|Q9B1H9|RK2_LOTJA 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|W9SGM4|W9SGM4_9ROSA 50S ribosomal protein L2; Found in the gene: LotjaGi2g1v0280900 LjG1.1_chr2 75268296 75268937 +
2 domain predictions
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LotjaGi2g1v0280900.3
n.a. 50S ribosomal protein L2; TAIR: ATCG00830.1 ribosomal protein L2 (ChrC); Swiss-Prot: sp|Q9B1H9|RK2_LOTJA 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|W9SGM4|W9SGM4_9ROSA 50S ribosomal protein L2; Found in the gene: LotjaGi2g1v0280900 LjG1.1_chr2 75268296 75268937 +
2 domain predictions
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LotjaGi2g1v0280900.4
n.a. 50S ribosomal protein L2, chloroplastic; TAIR: ATCG00830.1 ribosomal protein L2 (ChrC); Swiss-Prot: sp|Q9B1H9|RK2_LOTJA 50S ribosomal protein L2, chloroplastic; TrEMBL-Plants: tr|G1D799|G1D799_RICCO 50S ribosomal protein L2, chloroplastic; Found in the gene: LotjaGi2g1v0280900 LjG1.1_chr2 75268503 75268937 +
2 domain predictions
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LotjaGi2g1v0299200.1
n.a. Eukaryotic translation initiation factor 5A; TAIR: AT1G13950.1 eukaryotic elongation factor 5A-1; Swiss-Prot: sp|Q945F4|IF5A2_MEDSA Eukaryotic translation initiation factor 5A-2; TrEMBL-Plants: tr|I3T1J7|I3T1J7_LOTJA Eukaryotic translation initiation factor 5A; Found in the gene: LotjaGi2g1v0299200 LjG1.1_chr2 77343351 77353497 +
2 domain predictions
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LotjaGi2g1v0382300.1
n.a. 50S ribosomal protein L2; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A0L9TBY3|A0A0L9TBY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0382300 LjG1.1_chr2 87892092 87893522 +
2 domain predictions
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LotjaGi2g1v0382300.2
n.a. 50S ribosomal protein L2; TAIR: AT4G36130.1 Ribosomal protein L2 family; Swiss-Prot: sp|P29766|RL8_SOLLC 60S ribosomal protein L8; TrEMBL-Plants: tr|A0A0L9TBY3|A0A0L9TBY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0382300 LjG1.1_chr2 87892176 87894154 +
2 domain predictions
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LotjaGi2g1v0409300.1
n.a. Ribosomal protein L24; TAIR: AT3G49910.1 Translation protein SH3-like family protein; Swiss-Prot: sp|P51414|RL261_ARATH 60S ribosomal protein L26-1; TrEMBL-Plants: tr|I3SSN9|I3SSN9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0409300 LjG1.1_chr2 90637976 90639930 -
2 domain predictions
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LotjaGi3g1v0124700.1
n.a. 60S ribosomal L6-like protein; TAIR: AT1G74050.1 Ribosomal protein L6 family protein; Swiss-Prot: sp|P34091|RL6_MESCR 60S ribosomal protein L6; TrEMBL-Plants: tr|B7FH81|B7FH81_MEDTR Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0124700 LjG1.1_chr3 15257001 15263362 -
2 domain predictions
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