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LotjaGi1g1v0056000.2

Overview

Field Value
Gene ID LotjaGi1g1v0056000
Transcript ID LotjaGi1g1v0056000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|I1M7A2|I1M7A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0056000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:7853212..7859798) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGAATGGGAATGAGGATTTGATGCCTCCGCCACCACCACCCCCCATTGTCCCAGCTGATGTGGAACCGGTCAAGGTT GACCTCCTTGACCTACCCCCTGAGCCGGTGAAGAAAAAACTACCTACCCGGCTTCCCATTGCCAGGAAAGGTTTGGGTTC CAAAGGGACCAAGCTGCCCCTTCTCACAAATCACTTTAAAGTCACTGTTGCTAACAGTGATGGACATTTCTTCCAGTACA GTGTATGTTTTTCATTTTCTGTTCCGGTTTTTTACTGTCATACTTGTGTTTTTCTTGTAACGTATCACTCATACATTTGT ATTTGAACAGGTGGCTCTTTCTTACGAGGATGGGCGCCCTGTAGAAGGAAAGGGGGTTGGGCGAAAAGTGATTGACAAGG TGCAGGAGACATATGGTTCTGAGTTGAATGGGAAAGACTTTGCCTATGATGGGGAGAAGACTTTGTTTACCATTGGTTCT CTTGCTCGGAACAAGCTTGAGTTTACAGTTGTTCTAGAGGATGTTATATCTAACAGGTTAGGATAAATGTGATTGTCAAT TCCCGAAGTGTGCTTATATTCATATTAATGTTTCTCCAATGTAACTTTTTTCTTCTTTCATGTTATAGAAACAATGGAAA CTGCAGCCCTGATGGTGCTAGTACAAATGATAGTGACAAGAAGAGAATGAGACGGCCTTATCATTCCAAAACTTTCAAAG TTGAGATTAGTTTTGCTGCGAAGATTCCCCTGCAGGCAATTGTCAATGCCCTTCGTGGTCAGGAATCTGAGAATTATCAG GAAGCTATAAGAGTGCTTGATATTATCCTGAGACAACATGCTGCTAAGCAGTGCGTTTCCTTTTTTTTTTTTCACTTTTT TCAATGTTGATGTTTTATGGCATTTTTTCTTTTCATGTTACACAATAACAATACTGCACATTATCTGTTGCAGAGGCTGC TTGCTTGTGCGCCAGTCATTCTTCCACAATGATCCAAAGAATTATGCAGATGTTGGAGGTGGTGTCCTGGGATGCAGAGG GTTCCATTCCAGCTTTAGAACCACCCAAAGTGGTCTCTCCCTGAACATAGGTTTGATCTGGTGCCCGATGCCTCCATATT CCATAATGTCATCAGATTAGTTTGTTAATTTTTTTCATTTTCAAACTTGAATAGATGTCTCAACAACCATGATAATTCAA CCTGGGCCTGTGGTGGACTTCTTAATTGCCAATCAGAATGTTAGAGATCCTTTTTCACTTGACTGGGCAAAGGTAATCAT GTTCTTCAACATTTGTTTATTTGCTTACTTGATTTTTAACTACCCCCATCTAATACTTTATTCTACTGAACAGGCCAAAA GGACTCTAAAAAATCTGAGGATTAAAGCCAGTCCATCCAATCAAGAGTACAAAATCACAGGGCTTAGCGAACTACCATGC AAAGAGCAGACGTAGTTTATTTTTCTTTTTCTATGCTGCTTAAAATTGATTCATTTGAATTGACAGTTTAATCATTAACT TCCTACAGTTTGAGATTGGTTCTGTGTAGTTTTTTACATCTTGGATGAGGCTTTCATTTAAGATATGTTGTTTTGTAGTT TTACTATGAAGAAAAAAGGTGGAAACAATGGGGAGGAGGATGCTACTGAGGAGGAGATCACTGTTTATGAGTATTTTGTT AATTATCGAAAGATAGATCTCCGGTACTCTGCTGATCTTCCATGTATAAATGTGGGCAAGCCAAAACGCCCTACATATGT CCCTGTTGAGGTAAGTTAGATTAGATGGCTTTGTGTTTGTTTAGTTCTGAAATTCAGAATGGACAAATTTATGTTCACTT ATTAACTATGGGTTTCCATTCTCGTTTTGTGCTTAGCTTTGCTCTTTGGTGTCCTTGCAACGTTATACCAAAGCTTTAAC CACACTTCAAAGGTCTTCACTAGTAGAGAAGTCCAGGCAGAAGCCCCTAGAGCGGATGAATGTATTGAATCAAGTGAGTA TTAAGCATCTCAGATAAAATTGTGTCGTGTGATTCTCACTAAAATGTCTTGTTTACCTGATGTTGCTTTATTTTTGCAGG CTCTTAAAACCAGCAATTATGGCAATGAACCCATGCTTAAAAACTGTGGAATTACAATAGCTTCTGGTTTCACTCAAGTT GAGGGTCGAGTGCTGCAAGCTCCAAGGGTAAATTTTTTAATCATTGTGATCGTCAAAGTGCTTATTTCTTTTTGTTCTGC ATCGTCATATTTTTCATTTGCATGTCACTGAACTTCTGTCAAGGTTTGAAAAACAACTTGTTCGTAGCTTGGTTTTGGTG AAAAGATTTTGTTCCCCTTTATTAGTTATATTGTGCTGACAATTGCTCTGAATAAGAATTTGCATGTTTGATGTCAGGAG ATTCTGTAGCAATTAATTGTTTTCTTTTGTATGCTGTAACACCATCTGTTCATCGAATGGTTGCTTTCTATTTAGCTGTT TTGTTTGCCTTGTTTTTCCTTTGCATTTTACTGGAATTCTGTCTAGTTTTGGAAAAACTACTCTTCCTAGGCCTGGTTTT GCGGAAATGTTTTCTCTTGTATTTTGTAACACCATCTGAATGCAAATTTGCATGTTTGATGTCAGTAAATTCCGTAGCAA TTGGTTGTTTTCTCTTGTATTTTGTAACACCATCTGTGTATCAAATGCTAGCTTTCTATTTAGTTGTATTGTTTGCCTTG TTTTAAAATAAGCGCTTTTGTTCGAATTTCTTGAGAAGCGATGGTCAACTTAATTCAGAAAATTACTTTATTTTCCTTGG TAGTGAAGGTATCTCATTCTTTAATGCTCAATATGTGTTCTGTGATGTGAATGTGATTCAAAACTGTTGACTAAATTTTC ATCTGCAGTTGAAATTTGGCAATGGAGAGGATTTCAACCCGAGAAATGGAAGATGGAACTTAAACAACAAAGTACCAATT TCGATTCCCTCTGCTAAATTCTGATATTGTTGATCAAATACCAATTTGACTTGATTTGGTTTGCTGATGACTTATTTTTA ACAGAAAGTAGTCAGGCCGGCGAAGATAGAACACTGGGCTGTGGTTAACTTTTCTGCTCGCTGTGATGTACGAGGGCTTG TGAGGGATTTGATCAAATGTGCACGATTGAAAGGAATTGTAAGTCCCAGATCTGGTTATTTATGTACAAGTATTATAGAG ATCATGACTCCATATCTTATCTTATTTGCCTCTGGCAGCCTATAGATGAACCTTATGAAGAAATATTTGAAGAAAATGGT CAGTTTAGGCGTGCCCCACCATTGGTCAGAGTGGAGAAAATGTTTGAGAGAATCCAGAAGGAACTTCCTGGGGCACCTTC ATTCCTTCTTTGTCTTCTTCCTGAGCGGAAAAACTCGGATCTTTATGGTTAGTTATTTGATATAGTTGCTGTCTTATATT TACTATTTTTCCATTCAAACTTTTATCAATGAAAATATATTGGGCATCTTTAAGGTCCATGGAAGAAGAAGAATCTAGCT GAGTATGGAATTGTTACTCAGTGCATATCTCCTACCAGGGTCAACGATCAATATCTCACAAATGTTTTGATGAAGATAAA TGCTAAGGTATATAGTTTATTTGGTTGGTATCATAGTAATACTCTGTTTACATCCAATTGCTACTTTTTTGCTGTGATTT GTCAACACGCATTTCCTGCTCTAATTCTTTGTTAATTTTTTTATTCTGTTGTAGCTCGGTGGGTTGAATTCAGTGTTAGG TGTTGAAATGAATCCTTCCATTCCTATTGTTTCCAAAGTTCCTACCATCATTCTTGGTATGGATGTGTCTCATGGCTCGC CAGGGCAATCAGATATTCCTTCTATTGCTGCAGTAAGTGATAAATGCTATTTACATTCATTCTGGTCCTCTTGTATATAT TGGTTAAATGCTGGCGTTATCAAAACAAATTCTTGCAAGTGTTGACCTTTGTGTTTAATTCCTAAATATGCAGGTTGTCA GCTCCAGAGAATGGCCTCTAATCTCGAAGTATAGGGCTTGTGTCCGTACCCAGTCTCCTAAGGTTGAGATGATTGATAAT TTGTTCAAGCAAGTGTCTGAAAAGGAAGATGAAGGAATTATAAGGTTGATTTATTTCTGTAGCAAATACCTAACTTGATC CTCCAAATATGTCTTGGACATCAAGTTGCTCCTGCTAATATTTTGGATGTCAATGTGGTCTTTCATCATGTAAAATAAGC CGAAATTTCCGTGCCCTTGATATCCTATATTTGGAGGACTGACTTGATATCTTATGTTTCTATTTATAAGATGAGAGTAT TTTTTTAATTTTCATTTCCATTCCTTAGATGGCCTTTGTGTTCTATAAATTGTTTTGTTATATATGCAGGGAACTTCTGA TTGATTTTTATTCAAGTTCTGGGAAGAGAAAACCCGATAACATAATTATCTTCAGGTTAAATTTCTTTCTGTTATTTGCT GACATGAATTATGTTTCTCTTTTGTTGTTACGGTAAATTATGTTTTAATGGTTTCTTTTGTTATCATTGCTTCATCATAA TATCTTCTTCAAAGCAATTTTAAAATAATTATGTGCATTTTTGCTTCTTTAAAGCAATTTTAAAATAATAATGTGCACTC CCAAAGTGTTGAATCTTAAATATCCTTGAAATCTGTTGTTTAAGATTGTTTCAACGGATGGGGCTTGTGGTGAACATGTT TGTCAGTAAAAGGGAATTTCAAGAGCTTAAATTTTGTTTTGCTAGTTTAATTAATCGTTGCAGCCTTCTAATGAAAATGC ATACCTTAAATTTTTGATATCTGGTTTTGTTGTTGTATTGATAAAATGCATTTATAATATTATTATTATTGTATGTTAAG TTTATTTGTAGGCCTTCAATTGATGTGATGATATTTTGCATTTTTTGTGAAATATGATTACTTTTGTTTGTGTATTTTAA GTATTGTTCTTTGTTGCTTTTGATTATGTTCTTGCCGTCTAATGATACTAAACATAGTTTCTTTTGCTTATGACTGTAGG GATGGGGTTAGCGAGTCCCAGTTCAATCAAGTTTTGAACATTGAACTAAATCAAATCATTGAGGTTCTTCAGCTGACCAA CTATGTCTCTTACATATGATATGATTTTTTTCTATGGGCATAATCTTAATTGTGTAAATTTTTAGGCCTGCAAGTTTCTG GATGAAACTTGGAACCCCAAATTCTTGGTGATTGTTGCTCAGAAGAACCACCATACAAAATTCTTCCAGCCTGGTTCTCC CGACAATGTGCCTCCTGGTGAGCAGCCTGTTTGAATTTTGTCACTGTTTTGTTATTTTAATTTAAATTTTCACTCTTAAC CTCATCGATTTTGCAGGAACTGTTATTGATAATAAAATTTGTCATCCTCGAAATAATGACTTCTATATGTGCGCACATGC TGGAATGATTGTAAGTATCTTCTGTTGAATTTGCAACATTGTGGCTTGATCTAATGAATATAGGTTTTGCAATTTTTTGA AGATGGATTACATATGTTGTCTTTAGGATGCATGTTTCATTTTACCGTGGATTTAATATCTATTTTGTGCTCAGTTCAGT ATGAAATTTTCCCATCAGGAAGTCCAGAATTCTTGATAGTCTTATTTATTAGATATTATTCTCTAAATTTATTAATTATG TTTGTTCACCTTGATATCTTTTTCCTTTAATAGATATTTTTCTCTACATCTATACAGTGTGTGTTTTAGCACGAATATTT GTAGCAACTGCTTCCATCTGGAAGTACAGAATTAAATTATAGCCTTGATATCTTCTTCTGTGGTTTTGGGAAGCTTCCTA TGCAAAGGCTTTGTTCATCCTTCCCACTCTTGTCTGCCCCATTGTGTAGTGTTTCTTTCTGTTGAATTTGATTCATTGAC TTACAATTTCTTCAGATTCCATACTTCGATCCCTTTTCTGTTTTATATTATTATTATCATTATTATTTGAGGAGTAGGAG TGATTCATTTAATAGGATGCTTTGCATCAAGAAATTCTTTTTTACAACTTGTATTCAAATTTGCCACTCAGGGTACAAGC AGACCCACTCACTACCATGTTCTGCTTGATGATATTGGTTTTTCTCCTGATGAGCTGCAAGAGCTGGTCCATTCTCTGTC TTATGTGTAAGTTGGTAGATGTTTAGATCTATTTGGTTGCTTTATAGTAATGTTTCAAAGTATAAACCATTTGATACATC TTACTAAAAACATTTTGTTTTTTCCAGTTATCAGAGGAGCACCACTGCCATTTCTGTGGGTATGTTGTTGCGCATGCATT TATATCCAAGTTTTGTTTATTTGTTTGTTGACTTATATTCATTTACATGGGTGCTAATCTGTGAAAACCTATTGTTTTGT CCATGCAGTTGCTCCAATCTGCTATGCTCATCTTGCTGCAACACAGATTGGGCAGTTTATGAAGTTCGAGGACAAGTCTG ATACGTCTTCGAGCCATGGGGGGCTTACTGCTGCTGGTGTTGCTCCTGTCGTCCCTCAGTTGCCTAAGTTGCAGGATAGC GTCAGCAGTTCTATGTTTTTCTGTTGA 

CDS sequence (LotjaGi1g1v0056000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTCCGCCACCACCACCCCCCATTGTCCCAGCTGATGTGGAACCGGTCAAGGTTGACCTCCTTGACCTACCCCCTGA GCCGGTGAAGAAAAAACTACCTACCCGGCTTCCCATTGCCAGGAAAGGTTTGGGTTCCAAAGGGACCAAGCTGCCCCTTC TCACAAATCACTTTAAAGTCACTGTTGCTAACAGTGATGGACATTTCTTCCAGTACAGTGTGGCTCTTTCTTACGAGGAT GGGCGCCCTGTAGAAGGAAAGGGGGTTGGGCGAAAAGTGATTGACAAGGTGCAGGAGACATATGGTTCTGAGTTGAATGG GAAAGACTTTGCCTATGATGGGGAGAAGACTTTGTTTACCATTGGTTCTCTTGCTCGGAACAAGCTTGAGTTTACAGTTG TTCTAGAGGATGTTATATCTAACAGAAACAATGGAAACTGCAGCCCTGATGGTGCTAGTACAAATGATAGTGACAAGAAG AGAATGAGACGGCCTTATCATTCCAAAACTTTCAAAGTTGAGATTAGTTTTGCTGCGAAGATTCCCCTGCAGGCAATTGT CAATGCCCTTCGTGGTCAGGAATCTGAGAATTATCAGGAAGCTATAAGAGTGCTTGATATTATCCTGAGACAACATGCTG CTAAGCAAGGCTGCTTGCTTGTGCGCCAGTCATTCTTCCACAATGATCCAAAGAATTATGCAGATGTTGGAGGTGGTGTC CTGGGATGCAGAGGGTTCCATTCCAGCTTTAGAACCACCCAAAGTGGTCTCTCCCTGAACATAGATGTCTCAACAACCAT GATAATTCAACCTGGGCCTGTGGTGGACTTCTTAATTGCCAATCAGAATGTTAGAGATCCTTTTTCACTTGACTGGGCAA AGGCCAAAAGGACTCTAAAAAATCTGAGGATTAAAGCCAGTCCATCCAATCAAGAGTACAAAATCACAGGGCTTAGCGAA CTACCATGCAAAGAGCAGACTTTTACTATGAAGAAAAAAGGTGGAAACAATGGGGAGGAGGATGCTACTGAGGAGGAGAT CACTGTTTATGAGTATTTTGTTAATTATCGAAAGATAGATCTCCGGTACTCTGCTGATCTTCCATGTATAAATGTGGGCA AGCCAAAACGCCCTACATATGTCCCTGTTGAGCTTTGCTCTTTGGTGTCCTTGCAACGTTATACCAAAGCTTTAACCACA CTTCAAAGGTCTTCACTAGTAGAGAAGTCCAGGCAGAAGCCCCTAGAGCGGATGAATGTATTGAATCAAGCTCTTAAAAC CAGCAATTATGGCAATGAACCCATGCTTAAAAACTGTGGAATTACAATAGCTTCTGGTTTCACTCAAGTTGAGGGTCGAG TGCTGCAAGCTCCAAGGTTGAAATTTGGCAATGGAGAGGATTTCAACCCGAGAAATGGAAGATGGAACTTAAACAACAAA AAAGTAGTCAGGCCGGCGAAGATAGAACACTGGGCTGTGGTTAACTTTTCTGCTCGCTGTGATGTACGAGGGCTTGTGAG GGATTTGATCAAATGTGCACGATTGAAAGGAATTCCTATAGATGAACCTTATGAAGAAATATTTGAAGAAAATGGTCAGT TTAGGCGTGCCCCACCATTGGTCAGAGTGGAGAAAATGTTTGAGAGAATCCAGAAGGAACTTCCTGGGGCACCTTCATTC CTTCTTTGTCTTCTTCCTGAGCGGAAAAACTCGGATCTTTATGGTCCATGGAAGAAGAAGAATCTAGCTGAGTATGGAAT TGTTACTCAGTGCATATCTCCTACCAGGGTCAACGATCAATATCTCACAAATGTTTTGATGAAGATAAATGCTAAGCTCG GTGGGTTGAATTCAGTGTTAGGTGTTGAAATGAATCCTTCCATTCCTATTGTTTCCAAAGTTCCTACCATCATTCTTGGT ATGGATGTGTCTCATGGCTCGCCAGGGCAATCAGATATTCCTTCTATTGCTGCAGTTGTCAGCTCCAGAGAATGGCCTCT AATCTCGAAGTATAGGGCTTGTGTCCGTACCCAGTCTCCTAAGGTTGAGATGATTGATAATTTGTTCAAGCAAGTGTCTG AAAAGGAAGATGAAGGAATTATAAGGGAACTTCTGATTGATTTTTATTCAAGTTCTGGGAAGAGAAAACCCGATAACATA ATTATCTTCAGGGATGGGGTTAGCGAGTCCCAGTTCAATCAAGTTTTGAACATTGAACTAAATCAAATCATTGAGGCCTG CAAGTTTCTGGATGAAACTTGGAACCCCAAATTCTTGGTGATTGTTGCTCAGAAGAACCACCATACAAAATTCTTCCAGC CTGGTTCTCCCGACAATGTGCCTCCTGGAACTGTTATTGATAATAAAATTTGTCATCCTCGAAATAATGACTTCTATATG TGCGCACATGCTGGAATGATTGGTACAAGCAGACCCACTCACTACCATGTTCTGCTTGATGATATTGGTTTTTCTCCTGA TGAGCTGCAAGAGCTGGTCCATTCTCTGTCTTATGTTTATCAGAGGAGCACCACTGCCATTTCTGTGGTTGCTCCAATCT GCTATGCTCATCTTGCTGCAACACAGATTGGGCAGTTTATGAAGTTCGAGGACAAGTCTGATACGTCTTCGAGCCATGGG GGGCTTACTGCTGCTGGTGTTGCTCCTGTCGTCCCTCAGTTGCCTAAGTTGCAGGATAGCGTCAGCAGTTCTATGTTTTT CTGTTGA 

Protein sequence (LotjaGi1g1v0056000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIARKGLGSKGTKLPLLTNHFKVTVANSDGHFFQYSVALSYED GRPVEGKGVGRKVIDKVQETYGSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDGASTNDSDKK RMRRPYHSKTFKVEISFAAKIPLQAIVNALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNYADVGGGV LGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSLDWAKAKRTLKNLRIKASPSNQEYKITGLSE LPCKEQTFTMKKKGGNNGEEDATEEEITVYEYFVNYRKIDLRYSADLPCINVGKPKRPTYVPVELCSLVSLQRYTKALTT LQRSSLVEKSRQKPLERMNVLNQALKTSNYGNEPMLKNCGITIASGFTQVEGRVLQAPRLKFGNGEDFNPRNGRWNLNNK KVVRPAKIEHWAVVNFSARCDVRGLVRDLIKCARLKGIPIDEPYEEIFEENGQFRRAPPLVRVEKMFERIQKELPGAPSF LLCLLPERKNSDLYGPWKKKNLAEYGIVTQCISPTRVNDQYLTNVLMKINAKLGGLNSVLGVEMNPSIPIVSKVPTIILG MDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKQVSEKEDEGIIRELLIDFYSSSGKRKPDNI IIFRDGVSESQFNQVLNIELNQIIEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNNDFYM CAHAGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQIGQFMKFEDKSDTSSSHG GLTAAGVAPVVPQLPKLQDSVSSSMFFC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 34 905 872 0.0
PANTHER 34 905 872 0.0
Pfam 50 209 160 3.0E-29
SMART 219 271 53 1.3E-20
Pfam 221 269 49 1.6E-16
Gene3D 265 394 130 4.2E-30
SUPERFAMILY 266 430 165 3.92E-42
CDD 271 389 119 4.42319E-30
Pfam 276 406 131 9.5E-26
ProSiteProfiles 296 390 95 11.797
Pfam 416 462 47 4.0E-12
CDD 434 862 429 0.0
Gene3D 454 621 168 1.8E-40
Pfam 469 522 54 1.1E-6
SUPERFAMILY 544 866 323 3.03E-80
ProSiteProfiles 560 868 309 43.433
SMART 560 868 309 1.7E-118
Pfam 561 868 308 4.5E-106
Gene3D 628 908 281 7.6E-96

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0056000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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