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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032472
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 48 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.524s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001939.1
n.a. PREDICTED: protein argonaute 16-like [Glycine max] gi|356546333|ref|XP_003541581.1| chr0 581966 590622 -
2 domain predictions
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Lj0g3v0001939.2
n.a. PREDICTED: protein argonaute 16-like [Glycine max] gi|356546333|ref|XP_003541581.1| chr0 581966 590622 -
2 domain predictions
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Lj0g3v0048539.1
n.a. PREDICTED: protein argonaute 10-like [Cicer arietinum] gi|502123080|ref|XP_004497991.1| chr0 16367626 16375947 -
2 domain predictions
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Lj0g3v0089759.1
n.a. PREDICTED: protein argonaute 16-like [Glycine max] gi|356546333|ref|XP_003541581.1| chr0 36888216 36892416 +
2 domain predictions
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Lj0g3v0169039.1
n.a. PREDICTED: protein argonaute 5-like [Glycine max] gi|356544686|ref|XP_003540778.1| chr0 80736850 80740229 -
2 domain predictions
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Lj0g3v0316689.1
n.a. PREDICTED: protein argonaute 4-like [Cicer arietinum] gi|502134010|ref|XP_004501969.1| chr0 165447552 165449622 -
2 domain predictions
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Lj0g3v0316699.1
n.a. PREDICTED: protein argonaute 4-like [Cicer arietinum] gi|502134010|ref|XP_004501969.1| chr0 165447811 165449622 -
2 domain predictions
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Lj1g3v0112980.1
n.a. PREDICTED: protein argonaute 10-like [Cicer arietinum] gi|502119558|ref|XP_004496660.1| chr1 1232904 1240611 -
2 domain predictions
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Lj2g3v0621590.1
n.a. PREDICTED: protein argonaute 1-like [Glycine max] gi|356531036|ref|XP_003534084.1| chr2 8708847 8712320 -
2 domain predictions
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Lj2g3v2986010.1
n.a. PREDICTED: protein argonaute 4-like [Glycine max] gi|356554251|ref|XP_003545462.1| chr2 38569412 38577878 +
2 domain predictions
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Lj2g3v2986010.2
n.a. Protein argonaute 4 [Medicago truncatula] gi|357493613|ref|XP_003617095.1| chr2 38571085 38577878 +
2 domain predictions
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Lj3g3v1238870.1
n.a. PREDICTED: protein argonaute 1-like [Glycine max] gi|356531036|ref|XP_003534084.1| chr3 16087060 16090533 +
2 domain predictions
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Lj4g3v0668050.1
n.a. Protein argonaute [Medicago truncatula] gi|357475141|ref|XP_003607856.1| chr4 10855578 10861145 -
2 domain predictions
 –
Lj4g3v0668050.2
n.a. Protein argonaute [Medicago truncatula] gi|357475141|ref|XP_003607856.1| chr4 10856607 10860727 -
2 domain predictions
 –
Lj5g3v2045210.1
n.a. PREDICTED: protein argonaute 10-like [Glycine max] gi|356575891|ref|XP_003556070.1| chr5 28997918 29005188 +
2 domain predictions
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Lj6g3v1028540.1
n.a. PREDICTED: protein argonaute 4-like [Cicer arietinum] gi|502134010|ref|XP_004501969.1| chr6 11427809 11436597 -
2 domain predictions
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Lj6g3v1692520.1
n.a. Protein argonaute [Medicago truncatula] gi|357448367|ref|XP_003594459.1| chr6 18851373 18855691 +
2 domain predictions
 –
LotjaGi1g1v0056000.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|I1M7A2|I1M7A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0056000 LjG1.1_chr1 7852545 7861227 -
2 domain predictions
 –
LotjaGi1g1v0056000.2
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|I1M7A2|I1M7A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0056000 LjG1.1_chr1 7853212 7859798 -
2 domain predictions
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LotjaGi1g1v0237500.1
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237500 LjG1.1_chr1 56522754 56529810 +
2 domain predictions
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LotjaGi2g1v0183100.1
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60615182 60623380 -
2 domain predictions
 –
LotjaGi2g1v0183100.2
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
2 domain predictions
 –
LotjaGi2g1v0183100.3
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
2 domain predictions
 –
LotjaGi2g1v0183100.4
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
2 domain predictions
 –
LotjaGi2g1v0183100.5
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
2 domain predictions
 –
LotjaGi2g1v0183100.6
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
2 domain predictions
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LotjaGi3g1v0481700.1
n.a. Argonaute family protein; TAIR: AT2G27880.1 Argonaute family protein; Swiss-Prot: sp|Q9SJK3|AGO5_ARATH Protein argonaute 5; TrEMBL-Plants: tr|A0A1J7HTW6|A0A1J7HTW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481700 LjG1.1_chr3 89951190 89975681 -
2 domain predictions
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LotjaGi4g1v0085500.1
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7JIR3|G7JIR3_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi4g1v0085500 LjG1.1_chr4 11269139 11279635 -
2 domain predictions
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LotjaGi4g1v0085500.2
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7JIR3|G7JIR3_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi4g1v0085500 LjG1.1_chr4 11269710 11279604 -
2 domain predictions
 –
LotjaGi4g1v0085500.3
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7JIR3|G7JIR3_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi4g1v0085500 LjG1.1_chr4 11269842 11279700 -
2 domain predictions
 –
LotjaGi5g1v0098400.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|A0A1J7GZK6|A0A1J7GZK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0098400 LjG1.1_chr5 17588138 17594886 -
2 domain predictions
 –
LotjaGi5g1v0309200.1
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200 LjG1.1_chr5 62739741 62747587 +
2 domain predictions
 –
LotjaGi5g1v0309200.2
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200 LjG1.1_chr5 62741055 62747148 +
2 domain predictions
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LotjaGi5g1v0309200.3
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|V7BBW8|V7BBW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0309200 LjG1.1_chr5 62741055 62747148 +
2 domain predictions
 –
LotjaGi6g1v0002100.1
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 557222 566137 +
2 domain predictions
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LotjaGi6g1v0002100.2
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 557245 565997 +
2 domain predictions
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LotjaGi6g1v0002100.3
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 558565 565566 +
2 domain predictions
 –
LotjaGi6g1v0002100.4
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|A0A0S3SMR8|A0A0S3SMR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002100 LjG1.1_chr6 558580 565566 +
2 domain predictions
 –
LotjaGi6g1v0023300.1
n.a. Argonaute; TAIR: AT2G32940.1 Argonaute family protein; Swiss-Prot: sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16; TrEMBL-Plants: tr|K7M0M5|K7M0M5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0023300 LjG1.1_chr6 4343935 4353182 -
2 domain predictions
 –
LotjaGi6g1v0023300.2
n.a. Argonaute; TAIR: AT2G32940.1 Argonaute family protein; Swiss-Prot: sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16; TrEMBL-Plants: tr|K7M0M5|K7M0M5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0023300 LjG1.1_chr6 4344057 4353148 -
2 domain predictions
 –
LotjaGi6g1v0190900.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48703602 48712691 -
2 domain predictions
 –
LotjaGi6g1v0190900.2
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48704175 48711341 -
2 domain predictions
 –
LotjaGi6g1v0190900.3
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48704175 48711341 -
2 domain predictions
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LotjaGi6g1v0190900.4
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|K7N1Q0|K7N1Q0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0190900 LjG1.1_chr6 48704175 48711484 -
2 domain predictions
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LotjaGi6g1v0275900.1
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7IFV9|G7IFV9_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi6g1v0275900 LjG1.1_chr6 59274673 59278992 +
2 domain predictions
 –
LotjaGi6g1v0275900.2
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7IFV9|G7IFV9_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi6g1v0275900 LjG1.1_chr6 59274681 59279024 +
2 domain predictions
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LotjaGi6g1v0284000.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A; TrEMBL-Plants: tr|A0A1J7GZK6|A0A1J7GZK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284000 LjG1.1_chr6 60026428 60036559 +
2 domain predictions
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LotjaGi6g1v0334400_LC.6
n.a. Argonaute family protein; TAIR: AT5G43810.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|Q9XGW1|AGO10_ARATH Protein argonaute 10; TrEMBL-Plants: tr|I1LRB1|I1LRB1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0334400_LC LjG1.1_chr6 64893606 64901040 +
2 domain predictions
 –