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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003100
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 73 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.343s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001939.1
n.a. PREDICTED: protein argonaute 16-like [Glycine max] gi|356546333|ref|XP_003541581.1| chr0 581966 590622 -
4 domain predictions
1 GO term
Lj0g3v0001939.2
n.a. PREDICTED: protein argonaute 16-like [Glycine max] gi|356546333|ref|XP_003541581.1| chr0 581966 590622 -
4 domain predictions
1 GO term
Lj0g3v0041629.1
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
5 domain predictions
1 GO term
Lj0g3v0041629.2
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
5 domain predictions
1 GO term
Lj0g3v0048539.1
n.a. PREDICTED: protein argonaute 10-like [Cicer arietinum] gi|502123080|ref|XP_004497991.1| chr0 16367626 16375947 -
5 domain predictions
1 GO term
Lj0g3v0089759.1
n.a. PREDICTED: protein argonaute 16-like [Glycine max] gi|356546333|ref|XP_003541581.1| chr0 36888216 36892416 +
5 domain predictions
1 GO term
Lj0g3v0169039.1
n.a. PREDICTED: protein argonaute 5-like [Glycine max] gi|356544686|ref|XP_003540778.1| chr0 80736850 80740229 -
2 domain predictions
1 GO term
Lj0g3v0316689.1
n.a. PREDICTED: protein argonaute 4-like [Cicer arietinum] gi|502134010|ref|XP_004501969.1| chr0 165447552 165449622 -
4 domain predictions
1 GO term
Lj0g3v0316699.1
n.a. PREDICTED: protein argonaute 4-like [Cicer arietinum] gi|502134010|ref|XP_004501969.1| chr0 165447811 165449622 -
4 domain predictions
1 GO term
Lj1g3v0112980.1
n.a. PREDICTED: protein argonaute 10-like [Cicer arietinum] gi|502119558|ref|XP_004496660.1| chr1 1232904 1240611 -
5 domain predictions
1 GO term
Lj1g3v1788430.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr1 21495977 21527096 +
5 domain predictions
1 GO term
Lj1g3v2404380.1
n.a. reduced leaflet 3 [Lotus japonicus] gi|225030814|gb|ACN79520.1| chr1 28287505 28291472 +
5 domain predictions
1 GO term
Lj1g3v2404390.1
n.a. reduced leaflet 3 [Lotus japonicus] gi|225030814|gb|ACN79520.1| chr1 28287690 28291472 +
5 domain predictions
1 GO term
Lj1g3v5061000.1
n.a. PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max] gi|356571277|ref|XP_003553805.1| chr1 61957804 61970716 -
5 domain predictions
1 GO term
Lj2g3v0621590.1
n.a. PREDICTED: protein argonaute 1-like [Glycine max] gi|356531036|ref|XP_003534084.1| chr2 8708847 8712320 -
4 domain predictions
1 GO term
Lj2g3v0621600.1
n.a. PREDICTED: protein argonaute 1-like [Glycine max] gi|356560055|ref|XP_003548311.1| chr2 8712314 8714156 -
2 domain predictions
1 GO term
Lj2g3v0866690.1
n.a. PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| chr2 13389298 13403644 -
5 domain predictions
1 GO term
Lj2g3v1277440.1
n.a. reduced leaflet 3 [Lotus japonicus] gi|225030814|gb|ACN79520.1| chr2 20282190 20286841 -
5 domain predictions
1 GO term
Lj2g3v1277450.1
n.a. reduced leaflet 3 [Lotus japonicus] gi|225030814|gb|ACN79520.1| chr2 20282435 20286653 -
5 domain predictions
1 GO term
Lj2g3v2986010.1
n.a. PREDICTED: protein argonaute 4-like [Glycine max] gi|356554251|ref|XP_003545462.1| chr2 38569412 38577878 +
4 domain predictions
1 GO term
Lj2g3v2986010.2
n.a. Protein argonaute 4 [Medicago truncatula] gi|357493613|ref|XP_003617095.1| chr2 38571085 38577878 +
4 domain predictions
1 GO term
Lj3g3v0797530.1
n.a. Protein argonaute 4A [Medicago truncatula] gi|357456145|ref|XP_003598353.1| chr3 9582157 9583525 -
4 domain predictions
1 GO term
Lj3g3v1238860.1
n.a. PREDICTED: protein argonaute 1-like [Glycine max] gi|356560055|ref|XP_003548311.1| chr3 16085224 16087066 +
2 domain predictions
1 GO term
Lj3g3v1238870.1
n.a. PREDICTED: protein argonaute 1-like [Glycine max] gi|356531036|ref|XP_003534084.1| chr3 16087060 16090533 +
4 domain predictions
1 GO term
Lj4g3v0668050.1
n.a. Protein argonaute [Medicago truncatula] gi|357475141|ref|XP_003607856.1| chr4 10855578 10861145 -
5 domain predictions
1 GO term
Lj4g3v0668050.2
n.a. Protein argonaute [Medicago truncatula] gi|357475141|ref|XP_003607856.1| chr4 10856607 10860727 -
5 domain predictions
1 GO term
Lj5g3v2045210.1
n.a. PREDICTED: protein argonaute 10-like [Glycine max] gi|356575891|ref|XP_003556070.1| chr5 28997918 29005188 +
5 domain predictions
1 GO term
Lj6g3v1028540.1
n.a. PREDICTED: protein argonaute 4-like [Cicer arietinum] gi|502134010|ref|XP_004501969.1| chr6 11427809 11436597 -
4 domain predictions
1 GO term
Lj6g3v1629840.1
n.a. PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max] gi|356533095|ref|XP_003535104.1| chr6 18462095 18463929 +
3 domain predictions
1 GO term
Lj6g3v1692520.1
n.a. Protein argonaute [Medicago truncatula] gi|357448367|ref|XP_003594459.1| chr6 18851373 18855691 +
5 domain predictions
1 GO term
LotjaGi1g1v0056000.1
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|I1M7A2|I1M7A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0056000 LjG1.1_chr1 7852545 7861227 -
3 domain predictions
1 GO term
LotjaGi1g1v0056000.2
n.a. Argonaute; TAIR: AT2G27040.1 Argonaute family protein; Swiss-Prot: sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4; TrEMBL-Plants: tr|I1M7A2|I1M7A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0056000 LjG1.1_chr1 7853212 7859798 -
3 domain predictions
1 GO term
LotjaGi1g1v0237500.1
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237500 LjG1.1_chr1 56522754 56529810 +
4 domain predictions
1 GO term
LotjaGi1g1v0372300.1
n.a. Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr|K7KIB7|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300 LjG1.1_chr1 85036555 85063016 +
4 domain predictions
1 GO term
LotjaGi1g1v0798000.1
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136814701 136827226 -
4 domain predictions
1 GO term
LotjaGi1g1v0798000.4
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136826448 -
4 domain predictions
1 GO term
LotjaGi1g1v0798000.5
n.a. Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr|K7N0F5|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000 LjG1.1_chr1 136815175 136826484 -
4 domain predictions
1 GO term
LotjaGi2g1v0183100.1
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60615182 60623380 -
4 domain predictions
1 GO term
LotjaGi2g1v0183100.2
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
4 domain predictions
1 GO term
LotjaGi2g1v0183100.3
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
4 domain predictions
1 GO term
LotjaGi2g1v0183100.4
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
4 domain predictions
1 GO term
LotjaGi2g1v0183100.5
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
4 domain predictions
1 GO term
LotjaGi2g1v0183100.6
n.a. Protein argonaute; TAIR: AT1G48410.1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase; Swiss-Prot: sp|O04379|AGO1_ARATH Protein argonaute 1; TrEMBL-Plants: tr|I1MQL3|I1MQL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183100 LjG1.1_chr2 60616893 60622467 -
4 domain predictions
1 GO term
LotjaGi2g1v0300100.1
n.a. Argonaute family protein; TAIR: AT1G69440.1 Argonaute family protein; Swiss-Prot: sp|Q9C793|AGO7_ARATH Protein argonaute 7; TrEMBL-Plants: tr|D3GBV1|D3GBV1_LOTJA Reduced leaflet 3; Found in the gene: LotjaGi2g1v0300100 LjG1.1_chr2 77444744 77449434 -
4 domain predictions
1 GO term
LotjaGi2g1v0300100.2
n.a. Argonaute family protein; TAIR: AT1G69440.1 Argonaute family protein; Swiss-Prot: sp|Q9C793|AGO7_ARATH Protein argonaute 7; TrEMBL-Plants: tr|D3GBV1|D3GBV1_LOTJA Reduced leaflet 3; Found in the gene: LotjaGi2g1v0300100 LjG1.1_chr2 77445026 77447845 -
4 domain predictions
1 GO term
LotjaGi2g1v0300100.3
n.a. Argonaute family protein; TAIR: AT1G69440.1 Argonaute family protein; Swiss-Prot: sp|Q9C793|AGO7_ARATH Protein argonaute 7; TrEMBL-Plants: tr|D3GBV1|D3GBV1_LOTJA Reduced leaflet 3; Found in the gene: LotjaGi2g1v0300100 LjG1.1_chr2 77445026 77447905 -
3 domain predictions
1 GO term
LotjaGi2g1v0300100.4
n.a. Argonaute family protein; TAIR: AT1G69440.1 Argonaute family protein; Swiss-Prot: sp|Q9C793|AGO7_ARATH Protein argonaute 7; TrEMBL-Plants: tr|D3GBV1|D3GBV1_LOTJA Reduced leaflet 3; Found in the gene: LotjaGi2g1v0300100 LjG1.1_chr2 77445026 77449287 -
4 domain predictions
1 GO term
LotjaGi3g1v0481700.1
n.a. Argonaute family protein; TAIR: AT2G27880.1 Argonaute family protein; Swiss-Prot: sp|Q9SJK3|AGO5_ARATH Protein argonaute 5; TrEMBL-Plants: tr|A0A1J7HTW6|A0A1J7HTW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481700 LjG1.1_chr3 89951190 89975681 -
4 domain predictions
1 GO term
LotjaGi4g1v0085500.1
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7JIR3|G7JIR3_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi4g1v0085500 LjG1.1_chr4 11269139 11279635 -
4 domain predictions
1 GO term
LotjaGi4g1v0085500.2
n.a. Argonaute family protein; TAIR: AT1G31280.1 Argonaute family protein; Swiss-Prot: sp|Q9SHF3|AGO2_ARATH Protein argonaute 2; TrEMBL-Plants: tr|G7JIR3|G7JIR3_MEDTR Eukaryotic translation initiation factor 2c, putative; Found in the gene: LotjaGi4g1v0085500 LjG1.1_chr4 11269710 11279604 -
4 domain predictions
1 GO term