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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0104000 |
| Transcript ID | LotjaGi1g1v0104000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal tolerance protein; TAIR: AT3G58060.1 Cation efflux family protein; Swiss-Prot: sp|Q10PP8|MTP4_ORYSJ Metal tolerance protein 4; TrEMBL-Plants: tr|A0A072UFJ3|A0A072UFJ3_MEDTR Mn-specific cation diffusion facilitator transporter MTP8.1; Found in the gene: LotjaGi1g1v0104000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16075772..16078562) extracted from Lotus japonicus Gifu genome v1.2.
CAAAACCAATCAACTAAGAAAGGAAGATATGGGGGAAGTAGCTGTCAAAACAATTCAAATTAGAGTAAGAATCTTCCTTG CAAAAAATCCATGGAATCAATCTAGAATCTAGATCCTATCATTTCTTTACTTATTCACTAGATAAACAAATTTGAAAATG ACACCAAATCCGTATTTTGATCCAATATTTACTAGCTCAACATACTGCTTTGCATTGTGTTCTGTCATGTAAAGATGTTA TGTACTTAAATCCCACACTTCTTTTATTTTATTTGAAGAAACATGTTTTAATATTTACAGGAGAGAAAGAATACTATGAA AGACAATTTGCTACTCTAAAATCATTTGAGGAAGTTGACTCCATAATGACCTCGGACTCCATTGATGTAGAAGACATTGA AAAACAGGCTCAACATGAACGAGCAATGAAGATTTCTAATTATGCAAATGCAGTTTTACTGGTATTAAAGGTAATATTCC ATTACATGTTTATTTTCATTTATGATTTATCAATGAAACTCCAAAGAGTTATTCTTACTAGAAGGCATATTCTGAATATC TTCTTAAGTAGCCAACAATTTCAAATTCCATTAGCTATGAACCTATATATAAGGTTTTAATAGGATTCTCATTCACTCAA ACTAGCGAATTTCATGTGAAGCATTTCATCATAAGCTTCCTTAATGTTTGTTGTGGTACTGGTATGTGTAGATTTATGTG ATGATAAGGACTGGATCGATGGCTGTCGCGGCATCGACATTGGATTCTCTGCTTGACTTCATGGCTGGTGGCATTCTTTG GTTCACTCACCTTGCAATGAAGAACATAAACATGTATAAATACCCTATTGGAAAGTTGAGGATGCAGCCAGTGGGCATAA TCGTCTTTGCAGCTGTCATGGCAACACTTGGTGTGTCTAACTTACTTATCCTCTTCCTTGCTTTCAAAATTGTTCAGTTT TTGTTACTTTAATGTCATCATGAAAAATAATTTCCCTTCTCCTATGAAGTGAATGCAACAAAAGTAGTTTACATTTAATT AATGTCTTCATCAATATTTTGTTTTCTCTTTTTACTTAAATAAATAACATCTAATCCATTTTACCACAGGTTTTCAGGTA TTAACCACTGCTGTAGAACAACTAATTGAAAATAATCCTTCAGAGAAGATGTCTTATGATCAACTAGTATGGTTGTACAC TATTATGGTGTTTGCAACAGTGGTGAAGCTTGCACTCTGGTTTTATTGCAGAAGCTCAGGAAACAAGATTGTTCGCGCCT ATGCAGATGTAAGGATTTCTTCTCTTCACACAAATGGCTTGATTAGTTTAGTGCATGTCTAGAAACTCGTTCAAAAACTA TAGTGAAGCTAAAATAATGATGGGCAAAAGCAACTTCCTTTAGCTTTTGCTTCTGCCCGTTATGATTTTGGATTCACTGT GGTTTTCGAACGAGTTTCCAAACATCCAGATGCAGTTCCACACCATCTCTTACATATGCCACCCAGCAGGATCACCACTT TGATGTTGTAACAAATGTGGTTGGATTAGTTGCGGCTGTTCTTGGCGATAGATTTTACTGGTGGATTGACCCTGTTGGTG CTATTTTACTTGCAATTTATACTATCAAAAATTGGTCTGCCACTGTTATGGAAAATGCAGGTAATTCATTTATCAAATTT CTTAATAGTTAAATTATGAAAGAAGCATGCCTTTCAAACTATAAAATGATCATTGTTATCAAGAAGACTCAATAGCCACC TACCTAGTCTTTTGTTGGGACTTGAGATGATAATTCAGTGTTTTCAAGAAGCACAAGCCATGTCTATGAAATCCTAAATT CACACGGTCAAGAAATTTGAGTCATTCAATCAGACAACTCCGATTTTGAGTTTATCCGAGCTGTCTGGTCTTGCCTACTA GTCATCGGATTTTGATCAAACGCAGTTAAAATTACTTGAATGCGTGAATTTAGGATTTTTCTAACTACAGTGAACCCAAA ATCACCTTTTTATTTTCTCCTCAGAAGATCCATTAGACAGATCTCCAAACACATCAAAGGTGTTATATCGTAAGGAGTAC TGAAAATGCCCTGATTTTAGTCTAAATAATGGGAAAATAGTTTGATGGAATTGGTTAGCTTTGAGCTTCATAATTTGTAA TGACCAAAAGAATAAAATCTCTGTAGTGTATGTAAAGAGTGTTATGCATAATCTTTTTGTTGACAACATTGTATTGTATG GTGCAGTTTCACTAGTGGGACAATCTGCACCTCCTGAAGTTCTGCAGAAGCTGACTTATCTTGTCATAATGCACTCTCAA ATTAAGCGCATTGATACTGTCCGCGCTTACACATTTGGTGTTCTGTATTTTGTGGAGGTTGACATTGAACTGGCAAAGAA TTTACCTTTAAGAGAAGCACATAACATTGGAGAGAGCATACAGATAATGCTGGAGAAGCTTCCAGAAGTTGAGAGGGCAT TTGTTCATCTGGACTTCGAATGTGATCACAAACCAGAGCACTCTGTTCTTACCAAACTGCCAGATAGTCAACCTTAAGTA CAATTGAAGTCCATTTATATATTTATGTGACACATTAAATTTGTCTATAACTCAGCCTTCATTTTATGGTTTTTGTGGAC CAAAAAGAAAAAGAAAAAAAACACTTCTAATATGGTTTGTTCATAAAGAACAAAAGTTCATGCAGTGTTAAAAGTTGTGT TCATATATGGAAATCTCAATATATCTCACATAAGCATACAATGCTGGATAGATAAGGCAACCGTGTTGTTG
CDS sequence (LotjaGi1g1v0104000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGTAGCTGTCAAAACAATTCAAATTAGAAAACATGTTTTAATATTTACAGGAGAGAAAGAATACTATGAAAG ACAATTTGCTACTCTAAAATCATTTGAGGAAGTTGACTCCATAATGACCTCGGACTCCATTGATGTAGAAGACATTGAAA AACAGGCTCAACATGAACGAGCAATGAAGATTTCTAATTATGCAAATGCAGTTTTACTGGTATTAAAGATTTATGTGATG ATAAGGACTGGATCGATGGCTGTCGCGGCATCGACATTGGATTCTCTGCTTGACTTCATGGCTGGTGGCATTCTTTGGTT CACTCACCTTGCAATGAAGAACATAAACATGTATAAATACCCTATTGGAAAGTTGAGGATGCAGCCAGTGGGCATAATCG TCTTTGCAGCTGTCATGGCAACACTTGGTTTTCAGGTATTAACCACTGCTGTAGAACAACTAATTGAAAATAATCCTTCA GAGAAGATGTCTTATGATCAACTAGTATGGTTGTACACTATTATGGTGTTTGCAACAGTGGTGAAGCTTGCACTCTGGTT TTATTGCAGAAGCTCAGGAAACAAGATTGTTCGCGCCTATGCAGATGATCACCACTTTGATGTTGTAACAAATGTGGTTG GATTAGTTGCGGCTGTTCTTGGCGATAGATTTTACTGGTGGATTGACCCTGTTGGTGCTATTTTACTTGCAATTTATACT ATCAAAAATTGGTCTGCCACTGTTATGGAAAATGCAGTTTCACTAGTGGGACAATCTGCACCTCCTGAAGTTCTGCAGAA GCTGACTTATCTTGTCATAATGCACTCTCAAATTAAGCGCATTGATACTGTCCGCGCTTACACATTTGGTGTTCTGTATT TTGTGGAGGTTGACATTGAACTGGCAAAGAATTTACCTTTAAGAGAAGCACATAACATTGGAGAGAGCATACAGATAATG CTGGAGAAGCTTCCAGAAGTTGAGAGGGCATTTGTTCATCTGGACTTCGAATGTGATCACAAACCAGAGCACTCTGTTCT TACCAAACTGCCAGATACATACAATGCTGGATAG
Protein sequence (LotjaGi1g1v0104000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEVAVKTIQIRKHVLIFTGEKEYYERQFATLKSFEEVDSIMTSDSIDVEDIEKQAQHERAMKISNYANAVLLVLKIYVM IRTGSMAVAASTLDSLLDFMAGGILWFTHLAMKNINMYKYPIGKLRMQPVGIIVFAAVMATLGFQVLTTAVEQLIENNPS EKMSYDQLVWLYTIMVFATVVKLALWFYCRSSGNKIVRAYADDHHFDVVTNVVGLVAAVLGDRFYWWIDPVGAILLAIYT IKNWSATVMENAVSLVGQSAPPEVLQKLTYLVIMHSQIKRIDTVRAYTFGVLYFVEVDIELAKNLPLREAHNIGESIQIM LEKLPEVERAFVHLDFECDHKPEHSVLTKLPDTYNAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 63 | 63 | - | – | |
| PANTHER | 17 | 352 | 336 | 3.6E-220 | – | |
| PANTHER | 17 | 352 | 336 | 3.6E-220 | – | |
| SUPERFAMILY | 57 | 257 | 201 | 7.06E-39 | ||
| Gene3D | 58 | 256 | 199 | 6.0E-27 | ||
| TIGRFAM | 59 | 335 | 277 | 7.1E-31 | ||
| Phobius | 64 | 81 | 18 | - | – | |
| Pfam | 64 | 256 | 193 | 1.6E-27 | ||
| TMHMM | 64 | 81 | 18 | - | – | |
| Phobius | 82 | 86 | 5 | - | – | |
| Phobius | 87 | 108 | 22 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 109 | 128 | 20 | - | – | |
| Phobius | 129 | 148 | 20 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 168 | 188 | 21 | - | – | |
| Phobius | 189 | 357 | 169 | - | – | |
| Gene3D | 258 | 336 | 79 | 6.2E-10 | ||
| SUPERFAMILY | 259 | 337 | 79 | 4.45E-14 | ||
| Pfam | 261 | 335 | 75 | 1.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0104000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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