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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0132100 |
| Transcript ID | LotjaGi1g1v0132100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 87A; TAIR: AT1G61670.1 Lung seven transmembrane receptor family protein; Swiss-Prot: sp|Q8BKU8|TM87B_MOUSE Transmembrane protein 87B; TrEMBL-Plants: tr|A0A1J7HRF5|A0A1J7HRF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0132100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21140976..21144072) extracted from Lotus japonicus Gifu genome v1.2.
GCACTTTCACAATGACGATGGTTGATCATGGCGGCACAACGAGTCTCCATTGTTACCACCACTTCATCTCCTTCATCCTC TGTCTCACCTCAATCTCCATCACCCATGTCGCAGCTTCCATCCACGACTACCAGAACGAAACCTTCATCCACCGCGCTAA CTCCTTCTTCATCCATGGTGGCAGTGAGGGTCTCTACGCCTCCAAACTCCCCTCCTCCAATGTCTCTCTCGCTTCTGAAG ACAAGTTCCTCAATGGCAAATCATTCATCAGGTGATGATTCATGATTCCCTTTATTTCCTTTCTATTTCTGCACCCCATT TGCTCTTAGCTTTCTTTTTTTGTTCGCATTGTTCTATCAGCAAATGGGTATGTTGGATCTGTTTGTTTCTCGGGAAATTG ATTGGGTTTCGTCTTTTTCTTGCCATCATTTTCCATGAAAAAAAAAATAATTTTTTAATTCACTGGGTGTCCCCCAATTG ACTGATTTTGGAAATTTTGTAATTTGAGTGGATGCAGAAAATGACAGAAACATTTTGATTTGTTTATTATGATTATTATT TAAATAGAAAATTCTAATCTGGGTTCAGAAATGGGAAGGATTCATGGGAACAGAGTTTTCAGTCAGTGATGTATTCAATA ATATGCTTGTGAATAAATAATTAGTATTCTTAATTCTTGATAGGAACCTGTTTGAATTAACTAGTGAGATTGTAGCTGAA CTGTCACCTTTCAGAGAGTATTTAATTTATGAATAAGGTTTTAGTTCTTCAGAAAAGGTAGTTAAAAAGAGTTTTATAGC ATGTTTAGATCAGCTTATTTCTCCTTAGAATTGATTTTGGTACCTAGAAGTTACTCAGAGAAGATCCCCTCATAATTGAT TTTGGTTTTAGAATCAAGTGTAGAAGGATTTACAAACATGGAATTAATGTCATGAGCTGGATCAGGTTTGAGTCTATCAC ATTTCGAAGAACAAAAGAGTCTGCTGAAAAGACGAATCCGATGCAGCAAAAGACAGGGTTGGTGGAGGCTATAATAGTTA AGGTAAGAGATAGGAGTAACATTGGGGGTGCTTATCTGAACTCTGATGCTATATGCTGCACCCCGGAGCTTGCCAAAGCA GGTTCTTGCAAGTTAGGAGAGGTTATCATCCGGGAAAATCCGGATGACCCGAGCGGGCCTAGACGTCTGCAGACATTTTT CGAAGGGCAAAATGAAGAGGCTACAATGGTTATTCAAACTGTTGACATAACCAGTACTGGAATGTATTACCTGTATTTCA TGTTTTGTGATCCTCAACTGAAGGACACGGTGATCTCTGGAAGAACTGTTTGGAGAAATCCGGATGGTTATCTACCAGGG AAGATGATGCCGTTGATGACATTTTATGGTTTAATGCCTTTGGCTTACCTTTTTCTTGGCATGGTGTGGTTTCTTCGGTT TGTGCAGTATTGGAAAGATGTGATCCAGTTACATTACCACATTACTGCAGTTATTGGCCTTGGCATGTGTGAAATGGCTC TTTGGTATTTTGAATATGCAAATTTCAATTCCACTGGAAGCAGGCCAATGGGAATTACACTATGGGCTGTTACCTTCACT GCTGTCAAAAAGACAGTCTCGAGGCTTCTTCTTCTGGTAGTTTCAATGGGTTATGGCATTGTTCGTCCAACTCTTGGTGG CATAACCTCAAGAGTCCTTCTTCTAGGTGTGGTGTATTTTGTGGCCTCAGAAGCACTGGAGCTGGTGGAACATCTGGGTA ATATTAATGATTTTTCTGGGAAAGCGAGGCTTTTCCTAGTGCTTCCTGTGGCTCTGTTGGATGCATGCTTTATTCTTTGG ATCTTTTCATCATTATCTAAAACTCTGGAGAAGCTTCAGGTGAACCAGCATGGAATAATATCCCCTATCCTTGCATTATC AGCTTATGAGATAGGCCAATGGGCTTAACTCCAGTCTATGAAATTCTAGAATAGACACAAGTTTGGCATATTTATGTTGT TGATTATATTTGTTATTGTTGACATTCCAACAAAAGTATTATGATGTTTTTAAAAGGGAAATGAAGGTACATTTAGAAAA TAGCTTGAGTCTTTTTGGAAAGTTCTATGATCCTAGGATGAATTAAAAAAGGGTGACTGAAGAATTCTTGGAGCTTCAAA TTAAGAATTTAAGATCATTGTATTCTTGTATATTCTTATCCATACTTAAACATTTTCACTCTTAAATCTGGTTTAACTTG CATTTCATTTGCTTTGCTATTAAGTGTTAACTAAAAATGATTCTGTACATTTGTGGATTCTATGCACAGATCCGGAAAAG TACGGCAAAACTTGAATTGTACAGGAAATTTACGAATTCCCTTGCAGTGACAGTGCTTCTTTCAGTAATATGGATTGGCT ATGAGGTATTCTTTTGTTTCTTTGCTACTTCCTTTTTTTTTTTCCTTATTTTCTCCATATCCTTTGATGATCATTAATGA AAATACTACTGAGCCGAAAATACTAGTGAGATAATAGTTTTGAATAAAAAAATTAACAATGTAATTTATGTCATGACTTG AAAAACAATTTTCTCCTTAATGACAAGTAGATATTGTTCCTAATCTTGATTTTTTTTATGTGAAGTCTACAAGAGACTCG GGCTCTGTTTTTATTTTTATTTTTCATATTTCAGTTGTACTTCAATGCATCTGATCCTTTAAGTGAACTGTGGCGAAGAG CTTGGATCATCCCAGCTTTCTGGACTTTGCTTTCTTATGCTCTCCTGCTAGTGATCTGCCTTCTCTGGTCCCCATCTCAT AATCCTACCAGGTATATTCTAGCTTTACTGAAGAACAGAAAACATAAGGTTAATTCTGATAATTGCATATTGATACCTGT AAATCTGCATTTCCTTTTCATCTTTGCCTTTCTCTGTGGATGACACCTCACATATTTGACCCAAAAGTTGTCAAGTTGTT TTTCAATGCGTATGTGTCTCGCTGAGTTCTAATTGTTTCAAGTCTTTCATATAATTGCTAATGTTCGAGAGCACCCTATA AAAGTGGTAAGTTGTGATTTCAATAACTTGGTATCAATTTTAATGGGAGTAAATTTT
CDS sequence (LotjaGi1g1v0132100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGGTTGATCATGGCGGCACAACGAGTCTCCATTGTTACCACCACTTCATCTCCTTCATCCTCTGTCTCACCTC AATCTCCATCACCCATGTCGCAGCTTCCATCCACGACTACCAGAACGAAACCTTCATCCACCGCGCTAACTCCTTCTTCA TCCATGGTGGCAGTGAGGGTCTCTACGCCTCCAAACTCCCCTCCTCCAATGTCTCTCTCGCTTCTGAAGACAAGTTCCTC AATGGCAAATCATTCATCAGGTTTGAGTCTATCACATTTCGAAGAACAAAAGAGTCTGCTGAAAAGACGAATCCGATGCA GCAAAAGACAGGGTTGGTGGAGGCTATAATAGTTAAGGTAAGAGATAGGAGTAACATTGGGGGTGCTTATCTGAACTCTG ATGCTATATGCTGCACCCCGGAGCTTGCCAAAGCAGGTTCTTGCAAGTTAGGAGAGGTTATCATCCGGGAAAATCCGGAT GACCCGAGCGGGCCTAGACGTCTGCAGACATTTTTCGAAGGGCAAAATGAAGAGGCTACAATGGTTATTCAAACTGTTGA CATAACCAGTACTGGAATGTATTACCTGTATTTCATGTTTTGTGATCCTCAACTGAAGGACACGGTGATCTCTGGAAGAA CTGTTTGGAGAAATCCGGATGGTTATCTACCAGGGAAGATGATGCCGTTGATGACATTTTATGGTTTAATGCCTTTGGCT TACCTTTTTCTTGGCATGGTGTGGTTTCTTCGGTTTGTGCAGTATTGGAAAGATGTGATCCAGTTACATTACCACATTAC TGCAGTTATTGGCCTTGGCATGTGTGAAATGGCTCTTTGGTATTTTGAATATGCAAATTTCAATTCCACTGGAAGCAGGC CAATGGGAATTACACTATGGGCTGTTACCTTCACTGCTGTCAAAAAGACAGTCTCGAGGCTTCTTCTTCTGGTAGTTTCA ATGGGTTATGGCATTGTTCGTCCAACTCTTGGTGGCATAACCTCAAGAGTCCTTCTTCTAGGTGTGGTGTATTTTGTGGC CTCAGAAGCACTGGAGCTGGTGGAACATCTGGGTAATATTAATGATTTTTCTGGGAAAGCGAGGCTTTTCCTAGTGCTTC CTGTGGCTCTGTTGGATGCATGCTTTATTCTTTGGATCTTTTCATCATTATCTAAAACTCTGGAGAAGCTTCAGATCCGG AAAAGTACGGCAAAACTTGAATTGTACAGGAAATTTACGAATTCCCTTGCAGTGACAGTGCTTCTTTCAGTAATATGGAT TGGCTATGAGTTGTACTTCAATGCATCTGATCCTTTAAGTGAACTGTGGCGAAGAGCTTGGATCATCCCAGCTTTCTGGA CTTTGCTTTCTTATGCTCTCCTGCTAGTGATCTGCCTTCTCTGGTCCCCATCTCATAATCCTACCAGAGCACCCTATAAA AGTGGTAAGTTGTGA
Protein sequence (LotjaGi1g1v0132100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMVDHGGTTSLHCYHHFISFILCLTSISITHVAASIHDYQNETFIHRANSFFIHGGSEGLYASKLPSSNVSLASEDKFL NGKSFIRFESITFRRTKESAEKTNPMQQKTGLVEAIIVKVRDRSNIGGAYLNSDAICCTPELAKAGSCKLGEVIIRENPD DPSGPRRLQTFFEGQNEEATMVIQTVDITSTGMYYLYFMFCDPQLKDTVISGRTVWRNPDGYLPGKMMPLMTFYGLMPLA YLFLGMVWFLRFVQYWKDVIQLHYHITAVIGLGMCEMALWYFEYANFNSTGSRPMGITLWAVTFTAVKKTVSRLLLLVVS MGYGIVRPTLGGITSRVLLLGVVYFVASEALELVEHLGNINDFSGKARLFLVLPVALLDACFILWIFSSLSKTLEKLQIR KSTAKLELYRKFTNSLAVTVLLSVIWIGYELYFNASDPLSELWRRAWIIPAFWTLLSYALLLVICLLWSPSHNPTRAPYK SGKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 226 | 226 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 21 | 480 | 460 | 4.5E-258 | ||
| PANTHER | 21 | 480 | 460 | 4.5E-258 | – | |
| Pfam | 188 | 474 | 287 | 1.1E-104 | ||
| Phobius | 227 | 250 | 24 | - | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 251 | 261 | 11 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 262 | 282 | 21 | - | – | |
| Phobius | 283 | 296 | 14 | - | – | |
| Phobius | 297 | 318 | 22 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| Phobius | 319 | 329 | 11 | - | – | |
| Phobius | 330 | 347 | 18 | - | – | |
| TMHMM | 332 | 354 | 23 | - | – | |
| Phobius | 348 | 366 | 19 | - | – | |
| Phobius | 367 | 387 | 21 | - | – | |
| TMHMM | 369 | 391 | 23 | - | – | |
| Phobius | 388 | 407 | 20 | - | – | |
| Phobius | 408 | 427 | 20 | - | – | |
| TMHMM | 412 | 431 | 20 | - | – | |
| Phobius | 428 | 446 | 19 | - | – | |
| TMHMM | 446 | 468 | 23 | - | – | |
| Phobius | 447 | 468 | 22 | - | – | |
| Phobius | 469 | 484 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0132100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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