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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0132200 |
| Transcript ID | LotjaGi1g1v0132200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate dehydrogenase [NAD](P)+]; TAIR: AT2G40690.2 NAD-dependent glycerol-3-phosphate dehydrogenase family protein; Swiss-Prot: sp|Q949Q0|GPDA2_ARATH Glycerol-3-phosphate dehydrogenase [NAD](+)] 2, chloroplastic; TrEMBL-Plants: tr|V7B6W0|V7B6W0_PHAVU Glycerol-3-phosphate dehydrogenase [NAD](+)]; Found in the gene: LotjaGi1g1v0132200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21153274..21154520) extracted from Lotus japonicus Gifu genome v1.2.
TTCCATTTTCAAATAGCGATGGTGGTGGCATCAAAAGACAAAAAATTGGCAAATAGAGTTCAGCAGCTCCTAGCTTCAAG TCATTTAAGAATAAGCACATCAAGGTAGATAACCTTCAGTAGATTCATAAATGAAATTCAATTTTGTTTGCTAATTGTAT ATGACTTCTTTTTAGCTGTGTTATGCCTTCTATCGTACAAGTGTGTCTTTTCTGCTTGCTTTACTCTTTCACCTGTATTT TATGATGCTCTGGCTTCTTATTTCAAATAACTGTATGTAATGATTTTGGTGCAAGTGTTCAGCTTTGTAATCTCTGATGA CTCCAGTGATGTTACAGGAGTTGAAATAGCAGGTGCACTCAAGAATGTGCTGGCAATAGCAGCAGGGATAGTGGTAGGCA TGAATCTTGGTAACAACTCTATGGCTGCTCTTGTCTCGCAAGGTTGTTCAGAGATACGATGGCTTGCAACAAAGGTATTT GACTGTAGAATCTTAAATAAATTCGTAGAACTCTTAGCAAACTGTAGAATCTGGCGCCTTTCTTTTCTAAATATTCGTAC TGAAGAAGATTAAACTATGGATTTAATGGTTGGATGTCTTGTTTTTGTTGGTACACTCACACATTCTATTTTTATTTTCA TTTGACATATAAAGTCTTATTCGCTTTTCCCCCTTCAAATATTTGATGCGTATTTTCCTTAACTTATCTCTCTTTCTTCC AAATATCTTTTGAAGATGGGTGCAAAGCCAACTACGATAACTGGTCTGTCAGGAACTGGAGACATAATGCTTACATGCTT TGTGAATCTTTCAAGAAACAGAACAGTTGGTGTGCGTCTCGGATCGGGCGAGAAGCTCGAGAACATACTTAATTCCATGA ATCAGGTATCTAAATAGTTTCCTAGTGTTCCTAATCATACCTGAAACTCTTGCAATTGGCAGAGTTACTGAAAAATGTTT ATCCTTACTATATGCAGGTAGCAGAAGGTGTCTCCACAGCTGGAGCTGTGATTGCTTTGGCGCAGAAATATAACGTGAAG ATGCCAGTGTTGACAGCAGTTGCTCGTATTATTGACAATGAACTTACGCCTAAGAAAGCTGTTTTTGAGTTAATGAGCCT CCCTCAGGTTTTCTATTCTGACCCTCTTCTCATTAGACCTTTATTGGTCTTATATTTTGACGTTACAAGTTTTACTAATG ACGATTTCCCATCATAGGTTGAAGAAGTATGAAACCTCCCATCATAG
CDS sequence (LotjaGi1g1v0132200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTGGCATCAAAAGACAAAAAATTGGCAAATAGAGTTCAGCAGCTCCTAGCTTCAAGTCATTTAAGAATAAGCAC ATCAAGTGATGTTACAGGAGTTGAAATAGCAGGTGCACTCAAGAATGTGCTGGCAATAGCAGCAGGGATAGTGGTAGGCA TGAATCTTGGTAACAACTCTATGGCTGCTCTTGTCTCGCAAGGTTGTTCAGAGATACGATGGCTTGCAACAAAGATGGGT GCAAAGCCAACTACGATAACTGGTCTGTCAGGAACTGGAGACATAATGCTTACATGCTTTGTGAATCTTTCAAGAAACAG AACAGTTGGTGTGCGTCTCGGATCGGGCGAGAAGCTCGAGAACATACTTAATTCCATGAATCAGGTAGCAGAAGGTGTCT CCACAGCTGGAGCTGTGATTGCTTTGGCGCAGAAATATAACGTGAAGATGCCAGTGTTGACAGCAGTTGCTCGTATTATT GACAATGAACTTACGCCTAAGAAAGCTGTTTTTGAGTTAATGAGCCTCCCTCAGGTTGAAGAAGTATGA
Protein sequence (LotjaGi1g1v0132200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVASKDKKLANRVQQLLASSHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVSQGCSEIRWLATKMG AKPTTITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLENILNSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII DNELTPKKAVFELMSLPQVEEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 38 | 38 | 3.5E-6 | – | |
| PANTHER | 1 | 181 | 181 | 3.2E-90 | – | |
| PANTHER | 1 | 181 | 181 | 3.2E-90 | – | |
| PRINTS | 23 | 47 | 25 | 7.7E-21 | ||
| SUPERFAMILY | 29 | 181 | 153 | 2.21E-49 | ||
| Pfam | 30 | 170 | 141 | 2.2E-48 | ||
| ProSitePatterns | 38 | 59 | 22 | - | ||
| Gene3D | 39 | 182 | 144 | 4.6E-49 | ||
| PRINTS | 48 | 72 | 25 | 7.7E-21 | ||
| PRINTS | 88 | 105 | 18 | 7.7E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Glycerol-3-phosphate dehydrogenase [NAD+] activity | Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Glycerol-3-phosphate metabolic process | The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. | ||
| Cellular component | Glycerol-3-phosphate dehydrogenase complex | An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0132200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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