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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0178600 |
Transcript ID | LotjaGi1g1v0178600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glutaredoxin; TAIR: AT5G63030.1 Thioredoxin superfamily protein; Swiss-Prot: sp|Q8L8T2|GRXC1_ARATH Glutaredoxin-C1; TrEMBL-Plants: tr|I3S7F5|I3S7F5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0178600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:34309873..34312983) extracted from Lotus japonicus Gifu genome v1.2.
TATCACAATCTGATCGCGGTACACGACGACGCCGTGGTTTCTAATTTTGTTCTGTTTTCCTCTCAATCTACGTGCCATCC ACCAACATCAAATTTCCAACACCTGTGTGTTCTGTATTCTAACACCTGTCAATTGCCAGAAGCTTCAAGATTTCTCATCA CTGCGTTTTACCCTCTCTTGCTATATTAATGGGGTCTGCGTTTAGTTCAGGGTTGAGCAAGGAAGAGATGGAAACGATGA TGAATAAGGCTAAGGAGTTAGCTTCCTCTGCTCCTGTCTTTGTCTTCAGGTATGTATTTCACTTCAATCTCATCTTTTTT TTTAATGATTAAGGATGGCTTCAATGTTAGGCACTAATTGAGTAGTGTATTTATCTAGTTCATTCTACTTGTCAAACTGC AATTAATTTTTGAGTATGTTTGGTTTGGTATTAAATGCTAACTTGATTTCACAATAGTATGATGATAGTACCAACAATTA TTAGAATTTGAGTGGTCTTAATTCAACTCAAAAGTTAGTTCGTGAGTTAATGGTTGTTTTATTCTTTAAAAAACTATCTT GATCATATCTCTAGTAGAAACCTGGGACTTCTCAACACACGTTCTCACGCCTAACCCAGCCTCTGGGTTGGATATTTGGA GTGTGAGATTTGTAGGATCGAACAACCGAGGGTGGATATACGGGTGTTATTTACTTAACGGATCTAGGATAGACTCTAAT ATCATATTAGAATTTGGAGATCTAACTCAACCCAAAAGTTAGCTCATGAGTTGAGGGTTGTTCTACCTTTTATTAAGGTT ATCTTGGTTATCAATGTGTGACTTTTCAATATCAACAGAGAAACTAGAATTTTACGGTTGAGTTTAAGATGAAGAGGAGA AGCAGAATTTTGCCACTTCAAGGGAAATTCAAACATACATTAGGTTTAGACCCAAAACCACGTTCATTGAAAAGCAACAA TAGCTAATGTTTGTTCAAACTCACATCCAATCGTGGTTTATTTCAATGTAGTATACCAATTGATATGTACTATGTAGTGT TTGGCAAGTATCATTTTTCCACTGATCAGATTCTAATTTTAGAATTAGTTTGGTTTCATTAAAAAATGGAGAAATTTGTG TACAATTTTCTTTCATTACTGAGATTTTCCTCAATTGTACTTTTTTCATTTTTATTTCCCAATTCTGACTTTGGTAGTTG CAACTTTGGAAATTGATTGTGCATATATGTCCCTTTAGCTTTAAATACCAATTGGTGTCTTACATTTTCACTCACCCTTA TTTTTCATTTTGATAAAACAGCTTCTTTTTATTTTTTATATCTTAATAACCTATATTGTAAGTTTTGTTCTGGCAGTAAG ACTTACTGTGGTTACTGCAAGCGGCTCAAGGATCTCCTCACACAACTAGGAGCAACCTACAAGGTCATTGAATTGGATAC AGAACGTAAGTGTGCTTTAAATGGAAATGCTCTCTCAATGGAATTCTTGTTTGTTCCATTAAATGCGTGGTTAGAGACCA GTTAAATGCAATATGAATGAACTTTTAAGTTTTATCTCAATTTATAAGAACAGTTCTCTCTTTTATTTTTCTTAAACTAC ATGTTAACATCCATTTGCTATTCAAATTAGTCTAGTGTTGGTGTGAGGAGTTTGAGGACTGCTTTTGTTGTCCCTTCTAT AGGTTTTGCCTGATATTGACCCTTTCTTACATTTGAAGTTTCCCAATTAGATGGTTAGATAACTGTGGAGGTGAATTGGT TGCTTCTGAACACTTGTCTGATAGTTTATGCATGACAGCACATGTCAGAGTTACTTTGGTTTCTTTTTTTCTTGACCAGC AAAAGAAAATTTATCAATAATCGTAAGAGTATCATCTATTTTTTGATACTTTTCTATTTGCATCATGATTTATGCAAATA TGTGAACTTTATCCCCCATTTTATATCCGACTTAGAGTCTAATGGTCTATTTTCTTCTGCCTAGAGAGCTAAACATTACT TTCAGGAAACTAATTTGCTACCAATTCTTCGTGATGCCTCTTTTTTGTGATTTCGTTTTCAAGAACCTAATTTGCTATTA ATTTTGAAGGTGATGGAGATGGTATTCAATCAGCTCTAGCTGAGTGGACAGGTCAGAGGACGGTGCCAAACGTGTTCATT GGAGGAAAACACATTGGTGGTTGTGACAGTAAGCCCCCCCCCATTTGCTATTAATTTTGAAGGTGATGGAGATGGTATTC AATCAGCTCTAGCTGAGTGGACAGGTCAGAGGACGGTGCCAAACGTGTTCATTGGAGGAAAACACATTGGTGGTTGTGAC AGTAAGCCCCCCCCCCCCTCCCTCCCCTCTTCTTTTTCCCTCTTTTGTGCCAATCATTTTCAAAGATTTGGATCTCTTGA CAAAATTTCAACAAAAGCAAACTTGTGGAAACTTTCACATAAGAGGTTCATCTCACCTATTTCATACAAATGAAGAGAGA AATAGATACAAAGTTTCACCACAATAGAACTTAGGAAATTTTCATGTGACAGCTGACACCTCTCAACTGTCTCATACACC ACATTTTCTCTATATCTCTTTTTTCCTATCACATCACATTGTATATCTCATCTATCATTTATCTCTCTTCTCTTCGTATC TCACATCAGATGTTTACATCACTTAATTAGTTAATTGGATCTACACCAAACATTTCTTTTTTTCATCATCTTTCTGTATG GTACTATCTTGTCTTGCAGCTGTTTTGGAGAAACACCGGGCAGGTCAATTGGTTCCCCTTCTCAATGACGCTGGAGCCAT TGCCAATAACTCTGCTCAGCTCTGAAAATCCACGGAATGTTTTCTTCTATAAGCTGAGAAAAGGAAAACGTATATGCTGA AATTCTGAGAATGTTTTGTATGGATATAAAGGGCAACCAATAAGCACTGTAATGTGCTCTAGTATGGGAAAGAGGAATCC TCTTGTGACAATAAGAGGAAACCTAATCATTGTCATAAATGTGTGTATGTAACATCAAAATCGAAAATATGAAATTGTGT GATTATTTTTAATGGTTATTTAGTTTTTGCAGGGATTGCTAGCTTAACATTTTTTATATGGAGAATTGCTA
CDS sequence (LotjaGi1g1v0178600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTGCGTTTAGTTCAGGGTTGAGCAAGGAAGAGATGGAAACGATGATGAATAAGGCTAAGGAGTTAGCTTCCTC TGCTCCTGTCTTTGTCTTCAGTAAGACTTACTGTGGTTACTGCAAGCGGCTCAAGGATCTCCTCACACAACTAGGAGCAA CCTACAAGGTCATTGAATTGGATACAGAACGTGATGGAGATGGTATTCAATCAGCTCTAGCTGAGTGGACAGGTCAGAGG ACGGTGCCAAACGTGTTCATTGGAGGAAAACACATTGGTGGTTGTGACACTGTTTTGGAGAAACACCGGGCAGGTCAATT GGTTCCCCTTCTCAATGACGCTGGAGCCATTGCCAATAACTCTGCTCAGCTCTGA
Protein sequence (LotjaGi1g1v0178600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSAFSSGLSKEEMETMMNKAKELASSAPVFVFSKTYCGYCKRLKDLLTQLGATYKVIELDTERDGDGIQSALAEWTGQR TVPNVFIGGKHIGGCDTVLEKHRAGQLVPLLNDAGAIANNSAQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 9 | 124 | 116 | 2.2E-42 | ||
PANTHER | 17 | 120 | 104 | 2.3E-57 | – | |
SUPERFAMILY | 18 | 117 | 100 | 2.12E-32 | ||
ProSiteProfiles | 18 | 118 | 101 | 25.378 | ||
CDD | 29 | 110 | 82 | 9.17547E-47 | – | |
TIGRFAM | 30 | 110 | 81 | 1.0E-28 | ||
PRINTS | 30 | 48 | 19 | 4.0E-17 | ||
Pfam | 30 | 92 | 63 | 8.9E-21 | ||
PRINTS | 75 | 88 | 14 | 4.0E-17 | ||
PRINTS | 89 | 102 | 14 | 4.0E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
Molecular function | Protein disulfide oxidoreductase activity | Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds. | ||
Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. |
Expression pattern of LotjaGi1g1v0178600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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