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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0204900 |
Transcript ID | LotjaGi1g1v0204900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Adenine nucleotide alpha hydrolases-like superfamily protein; TAIR: AT1G48960.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q59X23|PMT4_CANAL Dolichyl-phosphate-mannose--protein mannosyltransferase 4; TrEMBL-Plants: tr|A0A0B2RD80|A0A0B2RD80_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0204900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44261849..44264602) extracted from Lotus japonicus Gifu genome v1.2.
TGAGGTAGCAGAGCAGAGCAGGGAAATTTCCCTATGTTATGGGCCTTATGGCTTTGTGCGCTATTAAACTCATAGTCAAT CAATATTCCATGAAGTAAAGTCCAAAATATGTATAGAAGAAATTCAGAGAGAGAGAGAGACAATTTTGGCGCTGTGCTAA TGTCTAATGATATATAAATCTAAATAAAGAACAGAGGAGAGAGAGAGGGGGAGAGATAGAAAATGGATGTGAAGAAAATT GTGGTGGTAGTAGAAGATGTAGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAATGTCATTCGCCATGGTGACAC AATCACTTTGCTCCATGTCTACCACTCCACAAGATCAAGAAGCAGAAGCAGAGCTCGTCTTCTTCGCCTCAACGGCTTCC GGTTAGCCCTTTCCTTTCAAGAGATGTGCAGCAACTACCCCAACGTACATACATAACCTCTTTCTTCTAACTTCACTTCT TTGTTTCTCTTTAGAATTTCCATTATTATTAACGGATATGTGTCATAATCTTAGGATTGTGTTGCAGACAAAGGTTGAGA TCATTGTCACGGAAGGGGACCAAGAAGGAACCAAGGTTGCTGCTACGGTCCAAGAGATTGGAGCTTCAATGCTTGTGGTT GGACTCCATGATCACAGTTTTCTTTACAAGTGAGTCCTATTCTGAAAACATTTCCAAGTTCATAGATCAATTTAGTGCAT TTTTGGAAATCGTGATCGAGCGAACCAAAAGCTAAGAAAAACCGCTTCTGTCCACTATATTTTGTCTTTGTCATCTTGAC CTATGGGTGGTGAGATCAATGAACACCTTTTTTTTCTGAAAAGATCAATGAACACCTTAAATTCAATGTTCTTTGCATAC ATATTTGGGTAGAATAGGAATTATTGGTTCTAATTAGCGGTCAATAACTACCTGATGGGTTCTGGGGATTTCACTTCAAT TACATCTTTCTCAGTGATCTGGCTGATCCTGACCTTAAGAATTGTGTTGTGTTCATCCAATTGCTTTAAATTACAAAAGT TTCTGTTTATGCAAGCGAACTTTAGAAATTGGTCAACAAAGAACCTTGGCAGATGCACGGGTCTTCTTTTAATGGTGACA AAACAAGCCTGAAGAAGTTTTTGGGATCACACTTTGAATTGACAGATACAACTTCTCTCAACTTTCACGTTTGTCTACCA TTATTTTGTCACACTGTAATTTTTTACCATGCATTCAAACATGCAGTTATGCGTTCAGAAACGACTATGGTCTAAACATG TAACATTACTATCTACAAAGTTAATGCATCACAAAAGAGCCTTCTAGAGCAGGAAGGCTCCATCCAATTTATTTATACAA GACAAATATGACATCTAAGCTGGCTCCAACACTGAGGAACATTTAAGTTTTAACTCAGACAATTGATGTGGAGTGGCTTC AGCAAATAATTAAACATTGCATTTTATTTTGTGTCCTAATCAGATACCAAATGCATTGATTTCAGATTGTTTCTTTTGTT TACTTTTACCAATGCAACTGCAACTTAACGCAGTGTTTTTTATTCATATGTGACAGATTCGCCATGGCCCATTCCCATAA AAGTATAGCCAGCAACTTCAACTGCAGAGTACTTGCCATCAAGCACCCTCATTCTGACCACATGATTTCTTCTGCAGTAG CTGTTTTAGACAGTTCAACCAACATGGACTTTTCACAAATTGACATTTCTCAATTACAGTAAGTTTCATGACAATTAATC TCAATAATTCCTTAACTTAACTTCATATTAGAAATTTATACGTCTAAATATTATTCTTGTACATTGCTTCCACATGCTGT TTGAGTGAAAGAAAAAAAACCCATTTATAGCGTAGCTATGTTTGTTTTTATCAAAAGGAACTTTCTTTATCAATTGAGAG CATAATGGATGGTACAAACATGCAACAAAGGTTTCTTAATACAGCTTCAAACAACTCAGTTTTAGAATTGAATTGCAGAG TCCCTCATATCACTCCACCAAAAATTCCGTACCGAATCTGCCCTATTCCGTCTGCAATTATTTGGAGATCAAGGAGAACT AGGAGAAGATGAAGGACTCAAATTCCTTTCAGAGTATTTATTTTGTTTTGTTTCCCAAGGTATCCAACGACAGACAGCCA AAAGACTAATTCTTCGAGAATCTAAAATCACGTTAAGTGAGTTGCACTCACAACAAATATTCCTCCGTACGAGCCTTGAT GATACTTTTTTAATACTTTCAAATTTCCTATACTTTAGGTTCACCTGCCACACACACATGATAAACATTTGACATAGTAT ACTTGGCTGTTTATGTCTACATTTTTCTGATTGTGGAAAGAATCTTGTTGTATAAATAACATCACCTTCTTACAGATTTG ATGAGTGGGGTAGAGTTTTCAATTTTTTCTCTGTCTTTTATGATCTGAATCTTACACCTCATAGATAACGCCGAAGATGC CATGACATTGTCACTGCCTCACCACACAGCATTATTTTTCTCACTTGATCAAGCTTTTCCTTCTTAAATATGTTTTTAGT CTTTGTCATTTAAAAAAAATCTAAAAAAAATTTGATTGGATTCTTATAAAATAGATTTTTTTTTTCAGAAAGCAAAATGA TATATATATTAGTTTAGTTCAAAGCTGCAGAGATGATCATAAGTCTGAATAGTAATAATCCTAGAAGGTTTTCAAAAGAG TTTTCATTTTAGTTTAGTTCAAAGTGTACTACCA
CDS sequence (LotjaGi1g1v0204900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGAAGAAAATTGTGGTGGTAGTAGAAGATGTAGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAATGT CATTCGCCATGGTGACACAATCACTTTGCTCCATGTCTACCACTCCACAAGATCAAGAAGCAGAAGCAGAGCTCGTCTTC TTCGCCTCAACGGCTTCCGGTTAGCCCTTTCCTTTCAAGAGATGTGCAGCAACTACCCCAACACAAAGGTTGAGATCATT GTCACGGAAGGGGACCAAGAAGGAACCAAGGTTGCTGCTACGGTCCAAGAGATTGGAGCTTCAATGCTTGTGGTTGGACT CCATGATCACAGTTTTCTTTACAAATTCGCCATGGCCCATTCCCATAAAAGTATAGCCAGCAACTTCAACTGCAGAGTAC TTGCCATCAAGCACCCTCATTCTGACCACATGATTTCTTCTGCAGTAGCTGTTTTAGACAGTTCAACCAACATGGACTTT TCACAAATTGACATTTCTCAATTACAAGTCCCTCATATCACTCCACCAAAAATTCCGTACCGAATCTGCCCTATTCCGTC TGCAATTATTTGGAGATCAAGGAGAACTAGGAGAAGATGA
Protein sequence (LotjaGi1g1v0204900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVKKIVVVVEDVDAARTALQWALRNVIRHGDTITLLHVYHSTRSRSRSRARLLRLNGFRLALSFQEMCSNYPNTKVEII VTEGDQEGTKVAATVQEIGASMLVVGLHDHSFLYKFAMAHSHKSIASNFNCRVLAIKHPHSDHMISSAVAVLDSSTNMDF SQIDISQLQVPHITPPKIPYRICPIPSAIIWRSRRTRRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 199 | 199 | 8.0E-98 | – | |
SUPERFAMILY | 1 | 139 | 139 | 7.28E-16 | – | |
Gene3D | 2 | 137 | 136 | 8.5E-16 | ||
Pfam | 4 | 137 | 134 | 8.9E-16 | ||
CDD | 15 | 116 | 102 | 7.49246E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0204900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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