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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0204900 |
Transcript ID | LotjaGi1g1v0204900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Adenine nucleotide alpha hydrolases-like superfamily protein; TAIR: AT1G48960.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32; TrEMBL-Plants: tr|A0A0B2RD80|A0A0B2RD80_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0204900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44262511..44264380) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTGAAGAAAATTGTGGTGGTAGTAGAAGATGTAGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAATGT CATTCGCCATGGTGACACAATCACTTTGCTCCATGTCTACCACTCCACAAGATCAAGAAGCAGAAGCAGAGCTCGTCTTC TTCGCCTCAACGGCTTCCGGTTAGCCCTTTCCTTTCAAGAGATGTGCAGCAACTACCCCAACGTACATACATAACCTCTT TCTTCTAACTTCACTTCTTTGTTTCTCTTTAGAATTTCCATTATTATTAACGGATATGTGTCATAATCTTAGGATTGTGT TGCAGACAAAGGTTGAGATCATTGTCACGGAAGGGGACCAAGAAGGAACCAAGGTTGCTGCTACGGTCCAAGAGATTGGA GCTTCAATGCTTGTGGTTGGACTCCATGATCACAGTTTTCTTTACAAGTGAGTCCTATTCTGAAAACATTTCCAAGTTCA TAGATCAATTTAGTGCATTTTTGGAAATCGTGATCGAGCGAACCAAAAGCTAAGAAAAACCGCTTCTGTCCACTATATTT TGTCTTTGTCATCTTGACCTATGGGTGGTGAGATCAATGAACACCTTTTTTTTCTGAAAAGATCAATGAACACCTTAAAT TCAATGTTCTTTGCATACATATTTGGGTAGAATAGGAATTATTGGTTCTAATTAGCGGTCAATAACTACCTGATGGGTTC TGGGGATTTCACTTCAATTACATCTTTCTCAGTGATCTGGCTGATCCTGACCTTAAGAATTGTGTTGTGTTCATCCAATT GCTTTAAATTACAAAAGTTTCTGTTTATGCAAGCGAACTTTAGAAATTGGTCAACAAAGAACCTTGGCAGATGCACGGGT CTTCTTTTAATGGTGACAAAACAAGCCTGAAGAAGTTTTTGGGATCACACTTTGAATTGACAGATACAACTTCTCTCAAC TTTCACGTTTGTCTACCATTATTTTGTCACACTGTAATTTTTTACCATGCATTCAAACATGCAGTTATGCGTTCAGAAAC GACTATGGTCTAAACATGTAACATTACTATCTACAAAGTTAATGCATCACAAAAGAGCCTTCTAGAGCAGGAAGGCTCCA TCCAATTTATTTATACAAGACAAATATGACATCTAAGCTGGCTCCAACACTGAGGAACATTTAAGTTTTAACTCAGACAA TTGATGTGGAGTGGCTTCAGCAAATAATTAAACATTGCATTTTATTTTGTGTCCTAATCAGATACCAAATGCATTGATTT CAGATTGTTTCTTTTGTTTACTTTTACCAATGCAACTGCAACTTAACGCAGTGTTTTTTATTCATATGTGACAGATTCGC CATGGCCCATTCCCATAAAAGTATAGCCAGCAACTTCAACTGCAGAGTACTTGCCATCAAGCACCCTCATTCTGACCACA TGATTTCTTCTGCAGTAGCTGTTTTAGACAGTTCAACCAACATGGACTTTTCACAAATTGACATTTCTCAATTACAGTAA GTTTCATGACAATTAATCTCAATAATTCCTTAACTTAACTTCATATTAGAAATTTATACGTCTAAATATTATTCTTGTAC ATTGCTTCCACATGCTGTTTGAGTGAAAGAAAAAAAACCCATTTATAGCGTAGCTATGTTTGTTTTTATCAAAAGGAACT TTCTTTATCAATTGAGAGCATAATGGATGGTACAAACATGCAACAAAGGTTTCTTAATACAGCTTCAAACAACTCAGTTT TAGAATTGAATTGCAGAGTCCCTCATATCACTCCACCAAAAATTCCGTACCGAATCTGCCCTATTCCGTCTGCAATTATT TGGAGATCAAGGAGAACTAGGAGAAGATGA
CDS sequence (LotjaGi1g1v0204900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGAAGAAAATTGTGGTGGTAGTAGAAGATGTAGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAATGT CATTCGCCATGGTGACACAATCACTTTGCTCCATGTCTACCACTCCACAAGATCAAGAAGCAGAAGCAGAGCTCGTCTTC TTCGCCTCAACGGCTTCCGGTTAGCCCTTTCCTTTCAAGAGATGTGCAGCAACTACCCCAACACAAAGGTTGAGATCATT GTCACGGAAGGGGACCAAGAAGGAACCAAGGTTGCTGCTACGGTCCAAGAGATTGGAGCTTCAATGCTTGTGGTTGGACT CCATGATCACAGTTTTCTTTACAATATAGCCAGCAACTTCAACTGCAGAGTACTTGCCATCAAGCACCCTCATTCTGACC ACATGATTTCTTCTGCAGTAGCTGTTTTAGACAGTTCAACCAACATGGACTTTTCACAAATTGACATTTCTCAATTACAA GTCCCTCATATCACTCCACCAAAAATTCCGTACCGAATCTGCCCTATTCCGTCTGCAATTATTTGGAGATCAAGGAGAAC TAGGAGAAGATGA
Protein sequence (LotjaGi1g1v0204900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVKKIVVVVEDVDAARTALQWALRNVIRHGDTITLLHVYHSTRSRSRSRARLLRLNGFRLALSFQEMCSNYPNTKVEII VTEGDQEGTKVAATVQEIGASMLVVGLHDHSFLYNIASNFNCRVLAIKHPHSDHMISSAVAVLDSSTNMDFSQIDISQLQ VPHITPPKIPYRICPIPSAIIWRSRRTRRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 190 | 190 | 1.2E-92 | – | |
SUPERFAMILY | 1 | 130 | 130 | 1.0E-13 | – | |
Gene3D | 2 | 128 | 127 | 2.3E-13 | ||
Pfam | 4 | 113 | 110 | 1.4E-12 | ||
CDD | 15 | 113 | 99 | 4.59187E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0204900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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