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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0273300 |
Transcript ID | LotjaGi1g1v0273300.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | WAT1-related protein; TAIR: AT5G40230.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230; TrEMBL-Plants: tr|G7J673|G7J673_MEDTR WAT1-related protein; Found in the gene: LotjaGi1g1v0273300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66940454..66943582) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGTAACACTTAGCAATGATGAAGGCGGCGGCCGTACTATTAAAATATCAATGCATCGACCAATCATAAAGTGTTCGG GAAAACACAACAACAGGAGTCAAGTGTAGACGTAAGCTGTGAGGTGAACTCAGAACTGAAGGTGTCTGTCTGTGTGTTTC AGAATCAATCAGAAATGGGGAAGGTGAGAGCTGCGTTTGTGGGAATGATCATGGCAGAGTGTGCTCAAGTTGGTTTAATC ATATTGAGCAAACAAGTCATGGCACAAGGCATGACCAATTTCATCTTCATCTTCTACTCCAACACAATCGCTTCCCTCAT TCTTCTTCCCACTTCATTCTTAGTCCACAGATTTCAACGCCCTCCTATCACTTTCTCCATCCTTTGCCAATTCTTCTTGC TTGGATTACTCGGGCAAGTTCACTTAATCCTACCCCTTTATTGATTATGCATAAATTGTGAGTTCTATTCTAATAACATG GTTTTTTTTTTCATTTTTAGTTTGTTTTCAGATTTTTGGCTCAGGCTTTTGGGTATGCTGGGATTAACTACAGCTCACCG ACGCTTGGTACTGCCATGCTCAACCTTATTCCTGGTTTTACCTTCATACTTGCAGTTGCTTTCAGGTTCAGTGACTTTGA ATTATTTGAGAATTTTCTGTTCTTTCAGACAAATTTATTTGAGCACTTTGGCTAGTTGTCATTATTCTATTTGGGTGAAT AAAGAGGAAATTTTGAGCTTATTGAACATTCTAGTTTTGGTAACACTTGTGTTTTCTGGTTGAATGAGAATTTATAAATA TAAATAATGTGTTTTCTGTGAATAATATATCATGACTGTGCCTTGTGATGGATTTTCTTCAATTCTGTTATCACTAATTT TCCGCCTAATGAAGGATTGGTGCCATCAACTCCTATTTCATGGAGATTTTGAAGTAGCATTTTGTTGGAACTACCATGTC CTCACTTTAGGATGAAGTAAATGTTTCACATTGAATTACAAACTATCTTGAGTGACAGCTGTGCAGTACTTCTCTATCTC ACTAGTATTTGGATACTTGTTAGTATCTCATTTTGAGACAAAAAAGTGAACAAAACTCTTCCATGGATTGAAAATCCGTT TAAATTACACTCAATTGTATCCAAACACACACGGAGGATAGAATTAACTTTTTAAGTCTTTTTCCTTCAGTTTTATTTCT TAGTTGTTGGATAGACTGCAAACCCATAAGTAATTTGCAAGGGTTAATTCAACTGGCATATAACCTGTCCAAGTCTCAAT CATTTTCTTGGATTTGTCTCTTTTCTGGCTCCAAATGAAGTCAAATTAATTTATCAATTCTCAAGGGAATTGCTCTATTG AGCCTATTACAATGTAATTTGACCTAAAATTCTCTCATATATCAATTTGGTTTACCAACATGCATAAATAGTTGTCAATT ACTGAAATAGTTATACTGCAGAATCATGTCGCTGAGATTTTTTGCACTCTTTATTTTCCCAAAATTCTTTCCAACTAAAG ATTCACAATTAATCATATTTTGTCTTGAAAATGAAAAATGTTCCATTTTTGGAGTTTAGGCACCTGGTGCTAACACGAGT GCTTTGAGATTCTTGTTTTCAATAATCATATGTTCAGATCACATAATGATTTATTTGATCAGAAAACCTTCTGCAATTCT TTTAAGTAAAAGCAACTCCTCAGGGTTTTGAAAGTTTTGTATGTTTTGTGTCTTTTTTTCTAGACAAAAGGCTGACCAAA TATGCACACTCATTGTAAAGCAAAAGATACATACTTGTTCTTTCAATCAAACCAGTCATTCACTGCTATACATATGCTTT CAGAATGGAACTATTGGATTGGAAAAGCTCTAGTACCCTTGCTAAATCACTGGGAACAATAGTATCAATTACTGGTGCAT TTATTGCGACATTGTACAAAGGCCCTGCACTTCTGATGGGGCTATCACCTTCAAACTCATCTCAGCAGCCAGTTTCCTCT CAAGATTCTAATTGGATACTTGGAGGATTATTTCTCGCAGCTGATTGCGTAATGGCTTCAGGATTTTTAATTTTACAGGT AAAATTATCAAGTAGAAGTAGAGCTTCATGATTAATGCTTTCTACTTGCATGGTACACAATGGGTTGAATATAATTGGCT ATATTTCAGGCTTCTATTCTTAAGAAATATCCAGCAGGGTTGATTACTGTATTCTTTTATACTTTCTTTGTGGCCATTCA ATCTGGTGTGACCTGTTTGGTTGTGGAAAGAGACATCAGTGCTTGGAGCTTGGAACCAATGTTTAGGTTGCTTGCTGTTT TATACTCGGTAATCAAAATGTAAATTAATTTGATTAGCTTAGAACTAGTAACTACTGCTTATCTTGGCCTAGAAGTCTGA AACATCATCTGTAAACATTCCAGGGAGTCATGGGCTCTGCATTTCAAGTCGGTGTTACTACTTGGTGTTTACACCAGACA GGACCTGTTTTTGTTTCCATGTTCAAGCCCATAGGCATTGTCATATCGGTGGTTGTAGGTGTTGCCATCCTTGGAGATGC ATTCTATCTTGGAAGGTAAGTTTGTGTCTCTCTTCTATATTGTGTTCAGTTGTACTGTTGAGTTTATTCAACGATCGCGA ATTCATTGTCTTTCAATGCAGTCTGGTTGGTGCAACTGTGATTGTTCTTGGGTTTTATTCTGTACTGTGGGGGAAATCCA AAGATATTGAAGTGAAAAGCTTGGAATCAAGGGGGAAACAGACCCCTCTTTTGAAGGAAAACAGCAGTGAAGACATTTAA AGTACATTTAAAAGGATGCTTGCTACAATTCTGCCGCAAATATGCAGTTTCGATTGTTTCACTCAGAGTAAGGGAGTAAG CTCTGACTCTGAAGTATGTTACAAGAAAACTATCTGGTAAATCTTCTAAGAAATATTTTGATTCAATTGATCTGTATTTA GACATAAATTTTGATATATATGATATTCTGTATTCATGTAGCTCCTACCAATGGGGAAAAAGCACTGGTGTATTTGTTAA GAATAATGACTATTCATAAATACCACATGCAATCAATTAGATTGTTGGAAGAAAATATCAATAAATGCATAGCATTGATT CATGGAAAT
CDS sequence (LotjaGi1g1v0273300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGGTGAGAGCTGCGTTTGTGGGAATGATCATGGCAGAGTGTGCTCAAGTTGGTTTAATCATATTGAGCAAACA AGTCATGGCACAAGGCATGACCAATTTCATCTTCATCTTCTACTCCAACACAATCGCTTCCCTCATTCTTCTTCCCACTT CATTCTTAGTCCACAGATTTCAACGCCCTCCTATCACTTTCTCCATCCTTTGCCAATTCTTCTTGCTTGGATTACTCGGA TTTTTGGCTCAGGCTTTTGGGTATGCTGGGATTAACTACAGCTCACCGACGCTTGGTACTGCCATGCTCAACCTTATTCC TGGTTTTACCTTCATACTTGCAGTTGCTTTCAGAATGGAACTATTGGATTGGAAAAGCTCTAGTACCCTTGCTAAATCAC TGGGAACAATAGTATCAATTACTGGTGCATTTATTGCGACATTGTACAAAGGCCCTGCACTTCTGATGGGGCTATCACCT TCAAACTCATCTCAGCAGCCAGTTTCCTCTCAAGATTCTAATTGGATACTTGGAGGATTATTTCTCGCAGCTGATTGCGT AATGGCTTCAGGATTTTTAATTTTACAGGCTTCTATTCTTAAGAAATATCCAGCAGGGTTGATTACTGTATTCTTTTATA CTTTCTTTGTGGCCATTCAATCTGGTGTGACCTGTTTGGTTGTGGAAAGAGACATCAGTGCTTGGAGCTTGGAACCAATG TTTAGGTTGCTTGCTGTTTTATACTCGGGAGTCATGGGCTCTGCATTTCAAGTCGGTGTTACTACTTGGTGTTTACACCA GACAGGACCTGTTTTTGTTTCCATGTTCAAGCCCATAGGCATTGTCATATCGGTGGTTGTAGGTGTTGCCATCCTTGGAG ATGCATTCTATCTTGGAAGTCTGGTTGGTGCAACTGTGATTGTTCTTGGGTTTTATTCTGTACTGTGGGGGAAATCCAAA GATATTGAAGTGAAAAGCTTGGAATCAAGGGGGAAACAGACCCCTCTTTTGAAGGAAAACAGCAGTGAAGACATTTAA
Protein sequence (LotjaGi1g1v0273300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKVRAAFVGMIMAECAQVGLIILSKQVMAQGMTNFIFIFYSNTIASLILLPTSFLVHRFQRPPITFSILCQFFLLGLLG FLAQAFGYAGINYSSPTLGTAMLNLIPGFTFILAVAFRMELLDWKSSSTLAKSLGTIVSITGAFIATLYKGPALLMGLSP SNSSQQPVSSQDSNWILGGLFLAADCVMASGFLILQASILKKYPAGLITVFFYTFFVAIQSGVTCLVVERDISAWSLEPM FRLLAVLYSGVMGSAFQVGVTTWCLHQTGPVFVSMFKPIGIVISVVVGVAILGDAFYLGSLVGATVIVLGFYSVLWGKSK DIEVKSLESRGKQTPLLKENSSEDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 6 | 6 | - | – | |
PANTHER | 6 | 341 | 336 | 1.1E-164 | ||
PANTHER | 6 | 341 | 336 | 1.1E-164 | – | |
Phobius | 7 | 24 | 18 | - | – | |
TMHMM | 7 | 24 | 18 | - | – | |
Pfam | 20 | 145 | 126 | 1.5E-6 | ||
Phobius | 25 | 35 | 11 | - | – | |
TMHMM | 34 | 56 | 23 | - | – | |
Phobius | 36 | 57 | 22 | - | – | |
SUPERFAMILY | 49 | 148 | 100 | 5.36E-5 | – | |
Phobius | 58 | 68 | 11 | - | – | |
Phobius | 69 | 91 | 23 | - | – | |
TMHMM | 69 | 91 | 23 | - | – | |
Phobius | 92 | 96 | 5 | - | – | |
TMHMM | 95 | 117 | 23 | - | – | |
Phobius | 97 | 117 | 21 | - | – | |
Phobius | 118 | 128 | 11 | - | – | |
Phobius | 129 | 149 | 21 | - | – | |
TMHMM | 130 | 149 | 20 | - | – | |
Phobius | 150 | 174 | 25 | - | – | |
TMHMM | 175 | 194 | 20 | - | – | |
Phobius | 175 | 195 | 21 | - | – | |
Pfam | 180 | 315 | 136 | 3.0E-6 | ||
Phobius | 196 | 206 | 11 | - | – | |
TMHMM | 206 | 228 | 23 | - | – | |
Phobius | 207 | 229 | 23 | - | – | |
Phobius | 230 | 240 | 11 | - | – | |
SUPERFAMILY | 235 | 319 | 85 | 1.57E-5 | – | |
Phobius | 241 | 265 | 25 | - | – | |
TMHMM | 243 | 265 | 23 | - | – | |
Phobius | 266 | 271 | 6 | - | – | |
TMHMM | 272 | 291 | 20 | - | – | |
Phobius | 272 | 291 | 20 | - | – | |
Phobius | 292 | 296 | 5 | - | – | |
TMHMM | 295 | 317 | 23 | - | – | |
Phobius | 297 | 317 | 21 | - | – | |
Phobius | 318 | 345 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0273300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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