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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0273300 |
| Transcript ID | LotjaGi1g1v0273300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alcohol dehydrogenase; TAIR: AT1G77120.1 alcohol dehydrogenase 1; Swiss-Prot: sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1; TrEMBL-Plants: tr|Q684J9|Q684J9_LOTJA Alcohol dehydrogenase; Found in the gene: LotjaGi1g1v0273300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66945202..66947557) extracted from Lotus japonicus Gifu genome v1.2.
GCTATGTCGACCACAGCTGGTCAAGTCATCAAATGCAGAGGTCAGTGACACAATCATCATCCACTCTAATCTTTCCTTCT GTTCTGTTTTGATCTATCTATCTATCTGCTACCTGCTCTATTTCTAGTTTACTTATTTTACTTTATAGGAATTGATTTTT CAGGTTTACACTAAAACTAACTATGATCATCATTCATCAATATCTAATCTTCTAACTAATCTAATTTCTGGATCAGACAT GTTCTTCACACTTTTTTATGGCCACTTAAACTCTTGATGGCTACTTAACTTCAAATGTTTAACAAAGTTTTGATCTATTT CGCTGATTTTTTATTCTATCCAGAAAATTTTTAAAACCCTTTCCCTCTTTTTAGATCCTTCTCTGTATAAATAGAAAATT ATAAATTTTGTTGAGCACTGTTTCTTATTGTTGAATATTCGAGGGTATGGCTATAAATTCAGTGATAATGTGTTGCTAAC TGTGTGTCTTGGTTGATTTGTTGGAACTTGGAAATGTACTAGCCGCGGTTTCATGGGAGGCAGGGAAGCCACTAGTGATT GAAGAAGTGGAGGTGGCGCCGCCGCAGGCCGGTGAAGTGCGTCTGAAGATACTCTACACCTCCCTTTGCCACACTGATGT TTACTTCTGGGAAGCTAAGGTAACAAACAATAAACTTGCATTACCCACTCTACATTCTATTTATATTTAGCTCAAGTTGT TTAATATGATCTTCATTTTCCCCTTGTTTCAGGGTCAGACTCCATTGTTTCCTCGGATATTTGGTCATGAAGCTGGAGGG TATGTTTCTCTTCTGAGTATAGCACACAATCACATATCATAAATCTATGCCTTTTTGATACATTTGTTTGAACATGAAAT ACTTTTGGTTAAACCTTACTAAAAATGTTGGCATGATGTTATTCAGCATTGTGGAGAGCGTAGGCGAAGGTGTGACTCAT CTGAAACCAGGGGACCATGCTCTCCCAGTATTCACAGGAGAATGTGGTGAATGCCCACATTGCAAATCAGAGGAGAGCAA CATGTGTGATCTTCTTAGGATCAACACTGATAGGGGTGTCATGATCAGTGACAACCAGAGTAGATTCTCCATAAAAGGAA AACCCATATACCATTTTGTTGGTACCTCAACATTCAGTGAATACACAGTTCTCCATGCTGGATGTGTTGCAAAGATCAAC CCTGCTGCCCCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTTTTGGTGCTACTGTCAATGTTGCAAA ACCAAAACCTGGTTCTTCTGTTGCCATCTTTGGACTTGGAGCTGTTGGCCTTGCTGTATGTTACCTTGCCTTTTGCTTTT GTGTGTGCATGTGTTATACTTATACTTTTTATAGCAACTCATAGAGGCTAATATTGACAAAAAATTTAGGCTGCTGAAGG GGCAAGGGTTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTTGAAGGAGGTAAAATGTTTTCTT CTTCTTCCATACAAAATGCTTGAAGATTCAGCTCAACATAAATGAAGTGGATATTCAATTCTTGATTGTATTTCTGGTTT TATTCTTGTTGGCAGCCAAGAAGTTTGGAGTCAATGAGTTCGTGAACCCAAAAGATCACGACAAACCTGTACAAGAGGTT AATTCATTGAAAATTTCATATTATGTTATATTTACGTTGACTTAAAGCTATGCTTTTCCAACTTATACTTTCACATTCTG ATGCTATGAATTAAAAATGTGAATGCTGGTGTGCAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGTGCTGTTGA ATGCACTGGCAGCATCCAGGCCATGATCTCTGCATTTGAATGTGTCCATGATGTATGCGAAAGCAGAACTCTTTTATTCT ATGTTGCTGAAGAGTTCCTATAAACCAAGGCCTAATCTTGATTGATTTCTTCTTCTTTTTCACAGGGTTGGGGTGTTGCT GTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCTGTGAATTTCTTGAATGAGAGGACTCTTAAGGG CACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTAATGTTGTAGAGATGTACATGAGAGGGGTAATTAAGCTTA TAAAATGATTTTCCTAAAGTCATTCAAGTAGAACTAGTACAATTTTGTTGCTAAGCATCTTATGGTGATACTTTTGCAGG AACTTGAACTGGAGAAATTCATCACCCACACAGTTTCGTTCTCTGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGA GAGTCCATCAGATGCATCATCCGCATGGGGGAGTAA
CDS sequence (LotjaGi1g1v0273300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACCACAGCTGGTCAAGTCATCAAATGCAGAGCCGCGGTTTCATGGGAGGCAGGGAAGCCACTAGTGATTGAAGA AGTGGAGGTGGCGCCGCCGCAGGCCGGTGAAGTGCGTCTGAAGATACTCTACACCTCCCTTTGCCACACTGATGTTTACT TCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGGATATTTGGTCATGAAGCTGGAGGCATTGTGGAGAGCGTAGGC GAAGGTGTGACTCATCTGAAACCAGGGGACCATGCTCTCCCAGTATTCACAGGAGAATGTGGTGAATGCCCACATTGCAA ATCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGATAGGGGTGTCATGATCAGTGACAACCAGAGTAGAT TCTCCATAAAAGGAAAACCCATATACCATTTTGTTGGTACCTCAACATTCAGTGAATACACAGTTCTCCATGCTGGATGT GTTGCAAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTTTTGGTGCTAC TGTCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAG GGGCAAGGGTTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTTGAAGGAGCCAAGAAGTTTGGA GTCAATGAGTTCGTGAACCCAAAAGATCACGACAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGTGTGGA TCGTGCTGTTGAATGCACTGGCAGCATCCAGGCCATGATCTCTGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTG TACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCTGTGAATTTCTTGAATGAGAGGACTCTTAAGGGC ACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTAATGTTGTAGAGATGTACATGAGAGGGGAACTTGAACTGGA GAAATTCATCACCCACACAGTTTCGTTCTCTGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGAT GCATCATCCGCATGGGGGAGTAA
Protein sequence (LotjaGi1g1v0273300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTAGQVIKCRAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVG EGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMISDNQSRFSIKGKPIYHFVGTSTFSEYTVLHAGC VAKINPAAPLDKVCILSCGICTGFGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARVSGASRIIGVDLVSSRFEGAKKFG VNEFVNPKDHDKPVQEVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKG TFYGNYKPRTDLPNVVEMYMRGELELEKFITHTVSFSEINKAFDYMLKGESIRCIIRMGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 379 | 376 | 7.2E-263 | – | |
| PANTHER | 4 | 379 | 376 | 7.2E-263 | – | |
| SUPERFAMILY | 4 | 186 | 183 | 1.14E-69 | ||
| CDD | 9 | 377 | 369 | 0.0 | – | |
| Gene3D | 20 | 370 | 351 | 1.6E-143 | – | |
| Pfam | 36 | 163 | 128 | 7.0E-23 | ||
| ProSitePatterns | 69 | 83 | 15 | - | ||
| SUPERFAMILY | 169 | 343 | 175 | 6.2E-47 | ||
| Gene3D | 183 | 321 | 139 | 1.6E-143 | – | |
| Pfam | 206 | 338 | 133 | 8.5E-24 | ||
| SUPERFAMILY | 328 | 377 | 50 | 3.06E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0273300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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