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LotjaGi1g1v0274400.1

Overview

Field Value
Gene ID LotjaGi1g1v0274400
Transcript ID LotjaGi1g1v0274400.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Alcohol dehydrogenase; TAIR: AT1G77120.1 alcohol dehydrogenase 1; Swiss-Prot: sp|P12886|ADH1_PEA Alcohol dehydrogenase 1; TrEMBL-Plants: tr|G7J5M6|G7J5M6_MEDTR Zinc-binding alcohol dehydrogenase family protein; Found in the gene: LotjaGi1g1v0274400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:67239493..67240031) extracted from Lotus japonicus Gifu genome v1.2.

ATGACCAATGGAGGTGTGGATCGGGCTGTTGAATGCACTGGCAGCATCCAGGCCATCTGCATTCGAATGTGTCCATGATG TACGTAAAAGCAGAACTCTTATATCTTTGTTGCTAAAGAGTTTATATAAACCAAGGCCTAATCTTGATTGATTTCTTCTT CTTTTGTTCAGGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCTGTGAAT TTCTTGAATGAGAGGACACTTAAGGGCACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTAATGTCGTGGAGAA GTACATGAAAGGGGTAAGTAACCTTATAAATTGATCTTCCTAAAGTCTTTCAAGTAGAACTAGTACTATTGTGTTGCTAA TGTGATTCATCTTATGGTGCAGGAACTTGAACTGGAGAAATTCATCACCCACACAGTTCCATTCTCAGAGATCAACAAAG CTTTTGACTACATGTTGAAAGGGCAGTCCATCAGATGCATCATCCGCATGGAGGAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0274400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGTGTGGATCGGGCTGTTGAATGCACTGGCAGCATCCAGGCCATCTGCATTCGAATGTGTCCATGATGGTTGGGG TGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCTGTGAATTTCTTGAATGAGAGGACAC TTAAGGGCACCTTCTATGGCAACTACAAACCCCGCACTGATCTTCCTAATGTCGTGGAGAAGTACATGAAAGGGGAACTT GAACTGGAGAAATTCATCACCCACACAGTTCCATTCTCAGAGATCAACAAAGCTTTTGACTACATGTTGAAAGGGCAGTC CATCAGATGCATCATCCGCATGGAGGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0274400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVWIGLLNALAASRPSAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGEL ELEKFITHTVPFSEINKAFDYMLKGQSIRCIIRMEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.720
16 57 42 1.0E-28 –
SUPERFAMILY
SSF51735
16 103 88 1.34E-7
IPR036291
PANTHER
PTHR43880
17 115 99 9.1E-66 –
PANTHER
PTHR43880:SF27
17 115 99 9.1E-66 –
Gene3D
G3DSA:3.90.180.10
58 106 49 1.0E-28 –
SUPERFAMILY
SSF50129
64 113 50 1.88E-12
IPR011032

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0274400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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