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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0317100 |
Transcript ID | LotjaGi1g1v0317100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O91734|POLG_EC01F Genome polyprotein; TrEMBL-Plants: tr|K7KLI5|K7KLI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76418050..76423787) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAGCACCGTTGAAAGAGAGACGGTGCAAGTGGGAGAGAGGGGAGGGAGAGAGAGAAGAAACGAGATCTTTGTAGTGA TTCTCCTCGACGACTCAATATTGCGTCGTAGTGGAGGGATCAACAGGCTTCATGCGCTTGCCTACGTGAATTAGAAACAC ATGCGAATATTAAATTTTAATTAAAAATTATATTTAAAATGCACAGACGAAATGATCTCTTCTATTATTTTATAAGGACC TATAATAAAAAATTAGAAGATGATAGAAAGTGCATGCCATTATGCCATGCTTAATACTCAATAGTCACTAGCGTTTGGCG AACTCTGTACTAGTGTACAATCAATTTTCCGGCGAAGGAGCGGAGAGAAAGCGGTTGGAGCAACCACCATTTGGGGAACT TGTGACGGAGATTCCTCAATCTTCCGCCGTGTACGATTCACCACCACCTGCTACATCGCGCATCGTCGACGTCAAAATGG TACACCTCACTCACTTCATTTCGTTATCACATTACACTGTTCTTCCTATTGTTTACTTCTCTTTGCTTCCAATCGTTTTC ACTGTGCGTTGTGAGCTCCTTTCTCTTCAATTTTGACTTGTAAACAGTTTTGGAATCTGGGGTTACTGTGATTTTGTTTA CGGGATTGTCGTAGTCAGAGTTCAAAATGCTTGATTAGGTTCTTCTTTTGTAAGACAAGAAGCACTGTTCATGCATAAGG AAACCAAGGCATGTTTGGAAAAAGAGGGACCAAATTGTCGATAATGCAATATTAAATTACAGAAATCCTAAAACAGATTA TTACAACTTTTTCGCCCTTTGAAACCAAGTCATTTGGGTGTGTTTGGGTAAACAGTTTAATGAAGTGCTTATTGTTGTCA TAAGTGCTTTTCCTATAAGCTAATTTGATGAAATAAGCTCAAAATAGGGTATATGTAGTTATAAGCGGCTATTCATAAGC TGATTTGAGTAACTTACTTACAAAATTAAGCTCAAAACTGCTAATTAGTAGGTCATAAGCAATTTACATAAGTTGTCTCG AGCACTTGTATAGATGCCTGTGATAGGATAAGTTCAAATGAACTCTTCCAAACGGGGCCGTAAACTATTAAAAACCGCTC AGTCGCCCAAATGTATCTCTTGTCTTACCCTACTCAGTACTCATTAGTTGCCTTTTTTGTTTTTAATCTTTTACAATACC AATTATTTTCGACCCTCAAAGTGTTCCCCTTTTGTTTCCATTTGTATTCTGTTATATTAATTTGCAGGTAACCTGTAGTT TCGTCAACTAAGTTCCTAAAGTTTAAAAACTTAAAATCATGCCTTTCTAGTTTAATTTTTGAGTAAATGTTTAACTTCTG TTAAGTGTTGCTGGTGTAGTATTTCTAATGTGGCAGTCTCTGCCTGATAGAGGAAAATCCAAGTGAAAGTTGAGAATTCT TATTGCCCAATCGATCAACTCCTTTACCATTTTCTAGTAATTTTGGGTTGGTGATAGCAAGAGCCACAAAGCTATTATTA ATGAGACATCTAACTGTCCTGTACAAATATCATAAAGCTTTCTATGCTTACAGTTAATGCTGAATGGAAATGAGTTATAC AATTAGTGGAAAAGTATTTGTAGACACCCCTCATGGGGTTATAAACCCCAAATAGAGAGAAATGAAAGATGTGATAGGTG ATGCGATTTGATACAGAGAGATAGATAGGAAAAATAAGGTGGAGGTAGTGTTCTACAAATAATGGTTGATTCATCTTAGG CATGACAATAAGCACTGGGCTGCTGTGTTTTGTGATGAGATGGATAACTTGTCATATAACTATTCCTTAGTTGTTTTACC TTCAATTGTAGTTACTATATCCTAAGATGACTTGCTATCTAACTCAGATTTAAGTTCAGAGAGAACAGAGAACTAAACCC TCTCACTAGTCACTGACTCACTCCTATTTTCTACGAAGGAAGGAAGTGACATTGATAGTTATTTGTTCACCAATGTATCA ATCTGATGGGGTGCAAATTTTGGGTACTAAGAACCAGCTCATTGATACTTGTTCCGTCGATCTTCTTTGGCCTCGAAGTA GATAGTGGAAGTGTAAAACTATGTTTCCATTTATGCTCTCCAACAATTACAAGCGTTCCTCTCTTTGAGATATTTATGGT TGGCGTCAAAAATTAAAATTAAAATACTTTCTGAAGCTCTTGGGTTAGAGGAGTAAAATTAATGAAAAGAACTGCAAAAG CACTGCCCAAAATTGAAGCCAGAAAACTAAATTGTAGCCTATTTTCCCTGTTAATGTCTGAGAATGAACATGTAGAAATA ATGCATATTGGGTTAGATATACTATACATAACATAATTTTGACATTGTTAGCACTCAAGGATTTAGCTTTAACATTTGAG AATTATAAGGATTTAATTAACAGCTTTAAACTTTTGGGAAGGATCTATACTAATTTAACCTTTGTATTCTGCTAATTACC TAAATGTCAATAGTTTCTTTGATACATCTTCAACAATAAAATGTATTTCCAAACTTTATTATTTAAAGCTTTAGTTATAA TTATTAAAACTTTTGAAACACTGTTGAAATTTTCCATTTTATCTAACCCTCTAAGTTTATTTGTCAGCCAGACAAATCTG TTCAATCTTTACAAGCATTGTTTCAATGATCTTTACAGTCGAATATCTGTCTAATATGTGGTGATGAAGGAGATGTGAAG CGCCTCATGTTCTGTGTCATGTGTAAAGCTTGTGCAGTGCATAGGTATGTGTCTGCAATCTACATTGAGTTGTCATTCTG ACTATTCAAATCATTGGCAATTGACAATATTTTAATTTTGGGTATGAATAATTGGCTAGAAATCTATTTTGCTGGCATTG GATTTTGAGACCTATATAATTTGCTCAGCCAAAGGTCTCTTGTCTATAATTTATCTAAAATGTAGATTGATAGTGGAATT TAAGTTTTGACGTCTTTCTAATTAGCTTAGACTATATGGTTTGTAGTTTATTGCATTAGCAAATATAATATGGAATAAAA TTACTTTGATATATATCCGTCTCTTTAATATATAAATCATATATCCAAACAACTAGGATATGGTTAGTGTATAATTGTTA AGATTTATATTCCTTTACTCACTTTGTTGTCTTACTACAGATACAAGTGTGTGTAATTGGTCTCACATTCTAATATAAGG TACAATGTGTTCTTTGAAATTAAATAAGAGAATTTATATTCTTACAAAATAATTTGATGGAGAATACTATGTTTAGTGGA AAATAGAGATAAATAGGATTTATATGTTCAGTAGAAAATAGAGATAATAGGCTTGAATTGAATATTTGTGTATCTGTTCA GGCATCACAAGGATATAGCTATATTTCAAATATAGTTATATTATATTAAATTTAATTACAATGGTAATTATAAGGATTAA ATTAACTCCTAAGAATGCCCCTTAATTAGATGACTAACGGATTAATTGAGTGGGTCATTGCTTTTGCCACCACAAAAATT CTTCTTGCACCATAAAATAGCCTCTAGAAATTAATTTCTTTGGCTTCCGTAAATTAATTTCCTGAAGCTATTGTGAGGTG TGGGGAGAAATTCTCACTGGCAAAAGCAACACCCATTGACTGTACACAAACACTACAGTTGGCTTAAGAACTTGGTAAAA GTATCTGTCAGATTATCATAACTGACAGCAAATTAGAAATTTCTCAAGAGTAATTTCCCCCTAATAAGTCAACCAGCATT ACCAAATTTCTCTGCCCTTCATCTAATTACTAGATTGGAGGCCAATATGTATAGAATTATTGTAGATCCACAAATGAGCT TCATTGCTTATGATTCAGATTTCATTTTTTAAGTAACTAACTTAGCTGCATGAGTTCAAATGTCACAGTTCTCATTGAGT ATCAGACGTTAGAAACTGCAATTTGTGAACTCTTATGGTCAAGGAATTTGTTGAAAGAGAGGTGAACATATATGTAACAA ATTAGGCTACACAGTTAATATTTGAATATAGTTATGGTCAATTAGTACCCTGATTAAGGAGCATCCTACTCTTGTAATTT GAAATTAATTTATGCAGCACCTGTTTTTAAAATTCATTTTGTGGTCTGATTTTACCCATATTTCTCACCTACTTCAAGTA GAGAAATGAAGTTGCCTCCATATTATCCATTGTCATTACAAAAATAGGGCTAAGATGTTGAATACGTTGTTTTTTCTTGA TATTTGTAAAATATGCTTAGTAAGTAGTATATGTATTTGCAGCTATTGCCCGGACAAGTTTCACACAGAAGATGATGGAA CAGTTAGTTGGAAATGTGAGGACTGTGCTCCAGATAACCCCAAATGTCTATCTGAGCAATTGAGAAAAAGCGAACGCATA AGTGATGCAACTGAAGCTAAATATAACAGGATGAAAATGCAAAAGGAAAGTTGTGCGCCTAGAAAACTAAAGTCTGTCAG GTTTGCTGAAGACAATGAGAATAGACAGCCAATTCTAGAAGATGAAATTGTTCCCTATGAGGAGCCTGAATCACATAAAG TTCCTTTGAGTACTTCACCTAACGAGCAAGTACTGGAGTCTGAGAAATATGGTGACTCTGAGTCCATAATATCTAAGTGC ATGTGTTGCCCGGAGATTGACAAATATAGCCATGCTCGGCCACTATGTGATCCAGTTTGGAAGTGAGTTTTTACTGTGTT CTTGTTGATGTTACTTTTTGACTTCTAGCATCTCTCCGGCCCCCTAATTGTTGGTGTAATTTTGAATAACACTGTTGAAT TGGCTTTAGAGTTTAGAGGGTTATTTATGCACCTCATTTTGCTTTATAACCTCTTCTTTTTTCCTTCATAGGGGTCAATT AAGATTGAACAATGGAACACGTTTTCTACTTGCTGCTTATATGTCAAGCAAAGCTTGCTCAAAAGTGCATTCGGCGGTAA CAGGCGTCCCCAAACGACTTGATGCTGAGATGTTGTTGAGATGTGTAATTTGGCCCAAGAGTTTTGCCATGTTTCCATCA AATGCTGATAGTATTGCGCTCTATCTTTTTCCCCGGTATGAAAGGTATGGTTCTTCATAGATTATATTCTACATACTAAC TAACTGGTAATGTATTGTTGTAGATTTCCCATGATTACTGGTATTCTCTTCAATCAGGGATGAGAAGATCTTTGACGGTG TGCTGCACAACGTAATTGAACAAGATCTTGCTCTCAGAGCAGTTGTTAACAACGTGGAGCTCCTAATTTTTTCATCACAT TTATTACCTCCAGATGATAGGCGTAAGTTAAGAAACTTATGGTTTTGCTGTAAATTTTGAAAAAATATTCTATTACCTCC AGTTCAATGACTTGTCTAATTTTCCAGGAATCTGTAAGAAGTATTATTTCTGGGGTGTTTTCAAACCAAAGCATAGGGAA CCGTGAATCTCATATCTCATTAGCTAAGAGTAAATATCTTCTCATTTTGGGAACAAAGCAGAGGATTATTGTATTACCAC TTACTAGATACATTTTCAGTTTCTGTTACATAATTGTAATGCTAATTGTTAGCAGTTAGTAATGTTAGTTAGTGTCTAAA TGAACAGTTGCCTGTTAACAGTTCAGTATGTAATTCTGTTACCAACAACAGTGTGTATGTAAGCATTCTGAATCTCTGAT CAATGAGAAATTGAGAATCAACAAGCTTTTTGATTCTGCGTTCGTTTTTTATGTTGAG
CDS sequence (LotjaGi1g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAATATCTGTCTAATATGTGGTGATGAAGGAGATGTGAAGCGCCTCATGTTCTGTGTCATGTGTAAAGCTTGTGC AGTGCATAGCTATTGCCCGGACAAGTTTCACACAGAAGATGATGGAACAGTTAGTTGGAAATGTGAGGACTGTGCTCCAG ATAACCCCAAATGTCTATCTGAGCAATTGAGAAAAAGCGAACGCATAAGTGATGCAACTGAAGCTAAATATAACAGGATG AAAATGCAAAAGGAAAGTTGTGCGCCTAGAAAACTAAAGTCTGTCAGGTTTGCTGAAGACAATGAGAATAGACAGCCAAT TCTAGAAGATGAAATTGTTCCCTATGAGGAGCCTGAATCACATAAAGTTCCTTTGAGTACTTCACCTAACGAGCAAGTAC TGGAGTCTGAGAAATATGGTGACTCTGAGTCCATAATATCTAAGTGCATGTGTTGCCCGGAGATTGACAAATATAGCCAT GCTCGGCCACTATGTGATCCAGTTTGGAAGGGTCAATTAAGATTGAACAATGGAACACGTTTTCTACTTGCTGCTTATAT GTCAAGCAAAGCTTGCTCAAAAGTGCATTCGGCGGTAACAGGCGTCCCCAAACGACTTGATGCTGAGATGTTGTTGAGAT GTGTAATTTGGCCCAAGAGTTTTGCCATGTTTCCATCAAATGCTGATAGTATTGCGCTCTATCTTTTTCCCCGGTATGAA AGGGATGAGAAGATCTTTGACGGTGTGCTGCACAACGTAATTGAACAAGATCTTGCTCTCAGAGCAGTTGTTAACAACGT GGAGCTCCTAATTTTTTCATCACATTTATTACCTCCAGATGATAGGCGTAAGTTAAGAAACTTATGGTTTTGCTGTAAAT TTTGA
Protein sequence (LotjaGi1g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNICLICGDEGDVKRLMFCVMCKACAVHSYCPDKFHTEDDGTVSWKCEDCAPDNPKCLSEQLRKSERISDATEAKYNRM KMQKESCAPRKLKSVRFAEDNENRQPILEDEIVPYEEPESHKVPLSTSPNEQVLESEKYGDSESIISKCMCCPEIDKYSH ARPLCDPVWKGQLRLNNGTRFLLAAYMSSKACSKVHSAVTGVPKRLDAEMLLRCVIWPKSFAMFPSNADSIALYLFPRYE RDEKIFDGVLHNVIEQDLALRAVVNNVELLIFSSHLLPPDDRRKLRNLWFCCKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 285 | 283 | 8.3E-100 | – | |
PANTHER | 3 | 285 | 283 | 8.3E-100 | – | |
SUPERFAMILY | 3 | 59 | 57 | 8.22E-5 | ||
ProSitePatterns | 5 | 51 | 47 | - | ||
Coils | 294 | 294 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0317100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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