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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019786
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 200 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 6.097s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062699.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi|356518627|ref|XP_003527980.1| chr0 21108503 21118988 -
2 domain predictions
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Lj0g3v0081929.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr0 32075747 32077988 -
2 domain predictions
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Lj0g3v0087639.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr0 35678964 35683219 +
2 domain predictions
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Lj0g3v0101179.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cicer arietinum] gi|502134404|ref|XP_004502107.1| chr0 42864169 42866036 -
2 domain predictions
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Lj0g3v0101599.1
n.a. PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Glycine max] gi|356527906|ref|XP_003532547.1| chr0 43124517 43127956 +
2 domain predictions
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Lj0g3v0127099.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1| chr0 57280917 57289518 -
2 domain predictions
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Lj0g3v0127099.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1| chr0 57280917 57289518 -
2 domain predictions
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Lj0g3v0173019.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr0 83166197 83170289 -
2 domain predictions
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Lj0g3v0191649.1
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
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Lj0g3v0191649.2
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
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Lj0g3v0191649.3
n.a. PHD finger transcription factor-like [Oryza sativa Japonica Group] gi|34394455|dbj|BAC83629.1| chr0 93677552 93684896 +
2 domain predictions
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Lj0g3v0252129.1
n.a. Uncharacterized protein TCM_035488 [Theobroma cacao] gi|508724764|gb|EOY16661.1| chr0 130725270 130730740 -
2 domain predictions
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Lj0g3v0262259.1
n.a. PHD finger transcription factor-like [Oryza sativa Japonica Group] gi|34394455|dbj|BAC83629.1| chr0 135913786 135920756 -
2 domain predictions
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Lj0g3v0262259.2
n.a. DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297843332|ref|XP_002889547.1| chr0 135913786 135920756 -
2 domain predictions
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Lj0g3v0270249.1
n.a. PREDICTED: LOW QUALITY PROTEIN: histone acetyltransferase HAC1-like [Cicer arietinum] gi|502089455|ref|XP_004488916.1| chr0 140011975 140025960 +
2 domain predictions
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Lj0g3v0315929.1
n.a. chromatin remodeling 4 protein [Arabidopsis thaliana] gi|334188199|ref|NP_199293.3| chr0 164962073 164963504 +
2 domain predictions
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Lj0g3v0335379.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Cicer arietinum] gi|502161278|ref|XP_004512104.1| chr0 175643447 175647690 +
2 domain predictions
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Lj0g3v0359919.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr0 189530378 189533856 -
2 domain predictions
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Lj1g3v0084860.1
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi|334186543|ref|NP_193228.6| chr1 747721 755417 +
2 domain predictions
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Lj1g3v0749150.1
n.a. Protein Jade-1 [Medicago truncatula] gi|357461689|ref|XP_003601126.1| chr1 9746890 9758766 -
2 domain predictions
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Lj1g3v0749150.2
n.a. Protein Jade-1 [Medicago truncatula] gi|357461689|ref|XP_003601126.1| chr1 9746890 9758766 -
2 domain predictions
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Lj1g3v1787670.1
n.a. PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| chr1 21245070 21249961 -
2 domain predictions
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Lj1g3v2326720.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr1 27560804 27566260 +
2 domain predictions
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Lj1g3v3139990.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356568903|ref|XP_003552647.1| chr1 35825583 35835601 -
2 domain predictions
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Lj1g3v3357590.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590942 -
2 domain predictions
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Lj1g3v3357590.2
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590892 -
2 domain predictions
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Lj1g3v3381180.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr1 38711786 38715893 -
2 domain predictions
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Lj1g3v4590860.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr1 54828110 54840792 -
2 domain predictions
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Lj1g3v4691520.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357510879|ref|XP_003625728.1| chr1 55550314 55558595 -
2 domain predictions
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Lj1g3v5034780.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum] gi|502113957|ref|XP_004494815.1| chr1 61526566 61539647 -
2 domain predictions
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Lj2g3v0635520.1
n.a. PREDICTED: zinc finger protein JACKDAW-like [Cicer arietinum] gi|502164922|ref|XP_004513329.1| chr2 9748167 9750985 +
2 domain predictions
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Lj2g3v0658160.1
n.a. PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Cicer arietinum] gi|502163239|ref|XP_004512772.1| chr2 10518406 10522621 -
2 domain predictions
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Lj2g3v1014400.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1| chr2 15598802 15614731 -
2 domain predictions
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Lj2g3v2017660.1
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481615|ref|XP_003611093.1| chr2 30946701 30948203 -
2 domain predictions
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Lj2g3v2017660.2
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481617|ref|XP_003611094.1| chr2 30947152 30961927 -
2 domain predictions
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Lj2g3v2017660.3
n.a. Lysine-specific demethylase 5D [Medicago truncatula] gi|357481615|ref|XP_003611093.1| chr2 30948598 30954085 -
2 domain predictions
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Lj2g3v2171850.1
n.a. PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| chr2 32539934 32563736 -
2 domain predictions
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Lj2g3v2171850.2
n.a. PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi|502095665|ref|XP_004490508.1| chr2 32540380 32563736 -
2 domain predictions
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Lj2g3v2540620.1
n.a. PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Cicer arietinum] gi|502096831|ref|XP_004490840.1| chr2 35136463 35139521 -
2 domain predictions
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Lj2g3v3222880.1
n.a. PHD finger protein [Medicago truncatula] gi|357494725|ref|XP_003617651.1| chr2 41147490 41155881 -
2 domain predictions
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Lj2g3v3339680.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| chr2 42793639 42797488 -
2 domain predictions
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Lj3g3v0338960.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Cicer arietinum] gi|502081422|ref|XP_004486862.1| chr3 2700970 2704565 -
2 domain predictions
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Lj3g3v0428780.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr3 4083475 4089807 -
2 domain predictions
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Lj3g3v0938180.1
n.a. PREDICTED: protein strawberry notch homolog 1-like [Cicer arietinum] gi|502087519|ref|XP_004488559.1| chr3 11462278 11489040 -
2 domain predictions
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Lj3g3v0938180.2
n.a. PREDICTED: protein strawberry notch homolog 1-like [Cicer arietinum] gi|502087519|ref|XP_004488559.1| chr3 11466063 11489040 -
2 domain predictions
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Lj3g3v1059060.1
n.a. PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform X1 [Cicer arietinum] gi|502082338|ref|XP_004487135.1| chr3 14071986 14083319 +
2 domain predictions
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Lj3g3v1114710.1
n.a. acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Arabidopsis thaliana] gi|334184527|ref|NP_180365.6| chr3 15066372 15073096 -
2 domain predictions
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Lj3g3v1128960.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| chr3 15174192 15184760 -
2 domain predictions
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Lj3g3v1684630.1
n.a. PREDICTED: origin recognition complex subunit 1-like [Glycine max] gi|356557695|ref|XP_003547149.1| chr3 21595422 21604031 +
2 domain predictions
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Lj3g3v2441840.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi|356522510|ref|XP_003529889.1| chr3 30108466 30117187 -
2 domain predictions
 –