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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011011
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 346 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 6.343s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0032569.1
n.a. PHD-finger family protein expressed [Medicago truncatula] gi|357457345|ref|XP_003598953.1| chr0 10258650 10263860 +
2 domain predictions
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Lj0g3v0047059.1
n.a. PHD finger-related protein [Medicago truncatula] gi|357481401|ref|XP_003610986.1| chr0 15695869 15700569 -
2 domain predictions
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Lj0g3v0060169.1
n.a. PHD and RING finger domain-containing protein [Medicago truncatula] gi|357511785|ref|XP_003626181.1| chr0 20004399 20008108 -
2 domain predictions
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Lj0g3v0062699.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi|356518627|ref|XP_003527980.1| chr0 21108503 21118988 -
2 domain predictions
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Lj0g3v0081929.1
n.a. PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cicer arietinum] gi|502111276|ref|XP_004494007.1| chr0 32075747 32077988 -
2 domain predictions
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Lj0g3v0087639.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr0 35678964 35683219 +
2 domain predictions
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Lj0g3v0100699.1
n.a. PHD finger family protein [Arabidopsis lyrata subsp]. lyrata] gi|297801176|ref|XP_002868472.1| chr0 42586261 42594667 -
2 domain predictions
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Lj0g3v0116239.1
n.a. protein TRF-like 10 [Arabidopsis thaliana] gi|30680203|ref|NP_195998.2| chr0 51095696 51102635 +
2 domain predictions
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Lj0g3v0116239.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508701719|gb|EOX93615.1| chr0 51095696 51102635 +
2 domain predictions
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Lj0g3v0127099.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1| chr0 57280917 57289518 -
2 domain predictions
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Lj0g3v0127099.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1| chr0 57280917 57289518 -
2 domain predictions
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Lj0g3v0173019.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr0 83166197 83170289 -
2 domain predictions
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Lj0g3v0190629.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 4 [Vitis vinifera] gi|225444591|ref|XP_002277324.1| chr0 93196369 93198474 +
2 domain predictions
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Lj0g3v0191649.1
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
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Lj0g3v0191649.2
n.a. Os03g0747600 [Oryza sativa Japonica Group] gi|297601684|ref|NP_001051260.2| chr0 93677552 93686119 +
2 domain predictions
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Lj0g3v0191649.3
n.a. PHD finger transcription factor-like [Oryza sativa Japonica Group] gi|34394455|dbj|BAC83629.1| chr0 93677552 93684896 +
2 domain predictions
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Lj0g3v0250639.1
n.a. Chromodomain helicase-DNA-binding protein [Medicago truncatula] gi|357490843|ref|XP_003615709.1| chr0 129933813 129937589 -
2 domain predictions
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Lj0g3v0252129.1
n.a. Uncharacterized protein TCM_035488 [Theobroma cacao] gi|508724764|gb|EOY16661.1| chr0 130725270 130730740 -
2 domain predictions
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Lj0g3v0252719.1
n.a. Os08g0414200 [Oryza sativa Japonica Group] gi|115476410|ref|NP_001061801.1| chr0 131128730 131134633 +
2 domain predictions
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Lj0g3v0262259.1
n.a. PHD finger transcription factor-like [Oryza sativa Japonica Group] gi|34394455|dbj|BAC83629.1| chr0 135913786 135920756 -
2 domain predictions
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Lj0g3v0262259.2
n.a. DNA binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297843332|ref|XP_002889547.1| chr0 135913786 135920756 -
2 domain predictions
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Lj0g3v0270249.1
n.a. PREDICTED: LOW QUALITY PROTEIN: histone acetyltransferase HAC1-like [Cicer arietinum] gi|502089455|ref|XP_004488916.1| chr0 140011975 140025960 +
2 domain predictions
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Lj0g3v0274529.1
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Cucumis sativus] gi|449522972|ref|XP_004168499.1| chr0 142326271 142331215 +
2 domain predictions
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Lj0g3v0311279.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357443735|ref|XP_003592145.1| chr0 162522956 162531762 -
2 domain predictions
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Lj0g3v0311279.2
n.a. PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cicer arietinum] gi|502119064|ref|XP_004496492.1| chr0 162522956 162536081 -
2 domain predictions
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Lj0g3v0315929.1
n.a. chromatin remodeling 4 protein [Arabidopsis thaliana] gi|334188199|ref|NP_199293.3| chr0 164962073 164963504 +
2 domain predictions
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Lj0g3v0324039.1
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
2 domain predictions
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Lj0g3v0324039.2
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
2 domain predictions
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Lj0g3v0335379.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 [Cicer arietinum] gi|502161278|ref|XP_004512104.1| chr0 175643447 175647690 +
2 domain predictions
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Lj0g3v0349129.2
n.a. PREDICTED: inhibitor of growth protein 4-like [Glycine max] gi|356534854|ref|XP_003535966.1| chr0 183291853 183295192 -
2 domain predictions
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Lj0g3v0359919.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr0 189530378 189533856 -
2 domain predictions
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Lj1g3v0084760.1
n.a. Uncharacterized protein TCM_034473 [Theobroma cacao] gi|508723496|gb|EOY15393.1| chr1 702837 703997 +
2 domain predictions
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Lj1g3v0084860.1
n.a. Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi|334186543|ref|NP_193228.6| chr1 747721 755417 +
2 domain predictions
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Lj1g3v0116680.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X4 [Cicer arietinum] gi|502159141|ref|XP_004511407.1| chr1 1453467 1463466 +
2 domain predictions
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Lj1g3v0116680.2
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X4 [Cicer arietinum] gi|502159141|ref|XP_004511407.1| chr1 1453467 1461893 +
2 domain predictions
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Lj1g3v0117810.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X4 [Cicer arietinum] gi|502159141|ref|XP_004511407.1| chr1 1492164 1499618 -
2 domain predictions
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Lj1g3v0268490.1
n.a. RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|42563280|ref|NP_177849.2| chr1 2937974 2946439 -
2 domain predictions
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Lj1g3v0546880.1
n.a. PHD-finger family protein expressed [Medicago truncatula] gi|357457345|ref|XP_003598953.1| chr1 6706940 6712150 +
2 domain predictions
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Lj1g3v0749150.1
n.a. Protein Jade-1 [Medicago truncatula] gi|357461689|ref|XP_003601126.1| chr1 9746890 9758766 -
2 domain predictions
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Lj1g3v0749150.2
n.a. Protein Jade-1 [Medicago truncatula] gi|357461689|ref|XP_003601126.1| chr1 9746890 9758766 -
2 domain predictions
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Lj1g3v1289030.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATXR5-like [Cicer arietinum] gi|502136971|ref|XP_004502916.1| chr1 15289335 15289755 -
2 domain predictions
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Lj1g3v1560110.1
n.a. n.a. chr1 18816298 18819653 +
2 domain predictions
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Lj1g3v1787670.1
n.a. PHD4 [Glycine max] gi|351725633|ref|NP_001237867.1| chr1 21245070 21249961 -
2 domain predictions
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Lj1g3v2195300.1
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357466985|ref|XP_003603777.1| chr1 26326216 26330797 +
2 domain predictions
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Lj1g3v2195300.2
n.a. Lateral signaling target protein-like protein [Medicago truncatula] gi|357466985|ref|XP_003603777.1| chr1 26326216 26331648 +
2 domain predictions
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Lj1g3v2326720.1
n.a. PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Cicer arietinum] gi|502147358|ref|XP_004506752.1| chr1 27560804 27566260 +
2 domain predictions
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Lj1g3v2443940.1
n.a. Chromosome condensation regulator-like protein [Medicago truncatula] gi|357506539|ref|XP_003623558.1| chr1 28515625 28516676 -
2 domain predictions
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Lj1g3v3139990.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356568903|ref|XP_003552647.1| chr1 35825583 35835601 -
2 domain predictions
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Lj1g3v3357590.1
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590942 -
2 domain predictions
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Lj1g3v3357590.2
n.a. Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1| chr1 38579182 38590892 -
2 domain predictions
 –