Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0337400 |
Transcript ID | LotjaGi1g1v0337400.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box family protein; TAIR: AT5G63520.1 F-box/LRR protein; Swiss-Prot: sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520; TrEMBL-Plants: tr|A0A151TR18|A0A151TR18_CAJCA F-box/LRR-repeat protein family; Found in the gene: LotjaGi1g1v0337400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79771491..79779245) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACATCTGAGTTGAATACTTGCGGTATTGGGCCAAAGCAAAAATGATGCTAGCCCAGTGTTTTACCGCTTTCTTTC CTAGGCACCGTGTCGGGGGTTGTGTCTGCCTGAACCTGAAGCACTGAACTCTGATGATGTTTTCTCATGTCTGAAGTTTC AAGTTTGAACCAAAATGGAGGAGAATCCATCGCCATCATCAACACTCAACAGCTTCGAACATGGGCGTGAGTTTGCTGAA CGAGGACCTTCTTCACAACATTCTAACCAGGCTTCCTGCCCTATCGTTCGCTTCAGCAACTTGCGTTAGCAAAACGTGGA ACTCTGTCTCCAATCGCATCCTTTCTCGTCCCAAGCTCTCCTCTGCGCTTTCTCTCAACCCTTCACCCAACGTAAGCAGC TTCATGCTTCTCATTCTTCAATTTCTGTGTGTCTTTGTGTTCAGTATCTGATTAATAGATCATGCAAATTGTCAGTTAGT TAGTTAGTTAGTTAGTTAGTTTGTTTGTTTGTTAATCTTCAGTTAACGATGTGCAGGATGCAGTGAATGAGGTTCTTCAC AAGATTCTGTCCGAGCCCATCCGACCTCATTTTGCTATTGTCAATCTTGCAGTTGGATTCGGAGCGTCCAAGATTCTGTG GCTTGTAAGTTGTAAGGAATTGACACTCTTTTTTTAGTGCAAGCAGTATTTGTATTATCATATGCAATTGACTTAATGCC TGTGGTGCAGGTTACAAAGACATTGGGTTCCGATATTCCAGTTATTGTCTCCGTGACAAATGGTATTATGGGAAGGGATG CTCTTACGGGTGAATTTAAAGAGGTTGAATGTTGATATTTGTTTCCTTTTGAGCTGGAGATTTGCTAGACTCATGTAGAT AATTTGTGCAGGTCAAGTGGGATGCCGATGCGCTTATAAGTGCCATTGTAGATGAGGGCATAGTGTTGACTGTTGGCTAC TTGCCAGGATTAAAAGTTGAAGCTATACCATTGCAAAGACCAGCCAAGGTAGTAAAATCTATTCAAGAATTTGGATTTTG TACTCTCAGAATATGAATGTGTGTAAGTCACATTGAAAATAAATACAGAATGTACAACCCAAGGTAGTTTCATGCAAAAG GTGCCGTTAAGCAGCCAGGGGGTTTTTATGATACCTCGTGGCAAGGGCAGCTTACTGAAGAAAGGTGTTAAGTATAGATG AAAGATGAAAAAACACAGAATATGTGGACATTTTGCATTAGTTTTACATATAAATTAACATCTCAATTTACAAAACAGAA TAGTCGAAAGACTGGTATTAATTATTTAACTTTATGGATATTTTACCCTCAGTATTTTGGGAATTCTTTAAATGTAAATA AGATACTAAAGCCATGCCTAGTAAGAACCAGAATGGTCTAAGACATCAGAGATTTGTGCTTCAACTAGCCAGAGTTAGCA AAATCTTTGGTTTTCTTGTAGGACTAGCTTCTCATAGTGATTTCTGACCCTTTTCACACAAAAGGTCACTTGTTCGGATA AAGTGATATTGTCGGGTAGTATCATGAAATCGGTGGAATTACCAATCTTCACTAGTGCAACCTGTGACTCTGACAGGTTG AGCTGGGCGAACCTGGGAACCATGCAACTCACACCTGTGTTTTTTATTTCCTTTGGTTTGATGTCACATTGAGTTCGACT TCTTTGGTTTTGATAGCTGTGGAAGGGGGGAGGTGTGATGACGATGCAGTTTCTTGTGCAGTCAGGGGAGAGGGTCACAA GAAGGTGTGTGTTCTGGTGTGGGACATTGGGTGGACCCTATAATGCTGTTATTGGGGTTTGATGGGCTTTCCATTGGTTC TGAATATCGTTTTCATGGTATTTTCATATGGAAAATGATTTATCCTCCTACTAATCCTCCTACAAATCCTCCTACACACT AAATGAAGCAAGAAGTTATTGCCTTTGGTATCTTGGAAATGTAAAAAACACTTAATTCTTTCTCCATTTAGTGTGTAGGA GGATGAAGTAGGAGGATATATCAATGCTCCATTTTTGTATATTCTGGTTGCAAGGGCAGTGTTGACATGTACTTTCTGGT TAGAAGTCTAAAAATTTGAGTGCTAGAAAATTGGTCTGCATGTGAACGAAGATTAATGTATTATAAGGATGTAGTAAATG AATGGAAGTGTAACCATGCTTTATGCTTTTATATTTATAATTATCTGTGGCAGCAGACACCTCAAGAACCATGGATTGAC AATTTTGTGATGGATATCAAGGAATATTCTGCCTCTGTCTCCAGTTGCCAATTCCCTGTTGGGATTATGCTGTTCGGAGT AAGTTAATGGTTGTGCACTTATTTACAAATAAATCACTATTTTTAGCATTCTTGGTTCTGTTTTTAACACTTTGATTTGG CTTCGCAGGAAGCAACCTCTGACATGGAACTGCTTCTGAAGAAATTGGGTGAGTGATGCTTGTATACATATATTTTGCTA CCAATTGTTATTGTCTTTCCTAATTCTGATTTTTCTTCATATTCTCATTTACTCTTTACTTTTCATGGTAAAAAGTATTA GGAAATTTGGTGTTTTGCATGGTAGAATGAGGTTTATGCTTCATTTTTGGTGTGTGATAAAAGGGTGTTTCTTAGAGCTC ATACATGTGATCCTATATTTTATCGAAAGATATTTGTTACAAAATTTCTATGGGATACATAGTGGTAATTTGATACTCGA ATTTAGATGAGGTGACTTTGTATTGTGTTAGTTCTGTAATTGAGAACATGACTTCAATTTACACCTTCCTGCTACTGGCC TGTGCTTGGTTTCTTTTTATTTTAATGATGTCTTGTTTTATATCAGACTATGCCATGCCGATGGACACATTCATTGTGGG TAATGAGCGAGGCTCCGTTGTATACAGAAGTGGAAATGATTATAGGAGCATCTGTGATAATACAAAGGACATAGAAGCTG TTGCTCTTGTATTTGCTCAAGACAAAGACAGGTCTTCTGGTACTTCTCATTCTTGATATCTTTTTGGTAGCTCTTGCTAC CTGATGGACAATAGAATTCATGAAACTGTTACAGTGCATGCAATCCCATTTCATTAATGGAGAATGTAATTTTTCATATT TCTCAAAGGATGTTAGGTTTGAAAACTTCTGTAATTTTAGTCGTTAGAAACTTAGAATATGTATTTTATGCTAGAGAAAT TTGGGTAGCTAATCAAACAAGTATTAAGAACAAATAAGTGGGAATTTTTTTCAGGTTTGATTAGGATGTCTGGAAATATC AATCGCTTTGCCTTTTCAAATGAGGACAGAGGTTGATAATGCAAGTATTTTCATTCCTTGTCTTCTTTAAGCACTACTAT TTGATTTTGTTATTGCTCCTTTTTTTGGGGCAAGTTAGGAAATTCCTGTTGGGATCTAAGTGGGTGATTGAGGGAAATGA GTTTTTCTTTGGGGGGGAGGGTAATTAAACACCCTCCTCCTAAAATCTAAAGGACTGTTTTACAACTCTGTCAGCTATTT CTTTGTAACACTTCCTACTCTTCTTCTGCCTTTATGTGTGCACATGTTGAATAATGGAGTCTATCTTGTATGTGATTTTT TACTGCCACAATTGTTTTTAGAGTTGCAAGGCGTGCTTATAAGTATCATCTTATTTTAGTTTAGTTTTTGCAATTCTCTA CAAGTTGCTGATCTTTGTTACGGATTGATTTTGCTGCAGGAAGTATTAGATTTCATATTGCATTCTCAAACGGTGTTTCA ACTGTGGGTGCTAGATACAAGGCAGATTCAGTTCAAACAAACTTCGATGTATGTTCTACAAGGCTAATGGCTAGGCGGGA AGGGCAGCAGGAACTTCTTGATGGTCAGAGTATTCTACTTGAGCTTAAAAATTCGGTGCGTGAATATTTGCATTTTTTTG GACAAAACTATAAATTCATTTCATTAAGGGAAAATTGATTTTTAAGATTATTAAGAAGGAATATTTAATCTTAAGAGATA TAAAACATGTAAATTTAGTGAGAAGGACCATTAGATTCACCTAAAAGACAAAAAAAAACCCTTGTGAAGAAGTTACTGAG TTATAATTTCAATTTCTTAAGAACTTGTTGCAACCGAGAGCCAAACGAGGAAACTTGCTTTGACCATCATAATTGTTTTC AATTGAATTCTGGTACACAAGTAAAGGCAAATTTCTTAGAAATCAGTAAGGAGATTCATTTTCTCCCATTCTCAAGATAT TTTCAATAGTTGTCATAAATCCAAATTCCAGAAACTATTTAAAAAACATAGCCTTACACATCAAAGCAAAAAGAGAGGAA AATAACCAATTAAAAAAATATCTCAAGTACTGCTCCAATGTCTAAATAGAGCAATTTCCCCTTTTTTAGACTTGACAAAA CCCCTTTGATAGTTCACAGCACTTGATAAAGGGGTGAAAAACCAGTGCAGAATTGACAAAACAAACTACAAAAGACTCAA TGTGAAGATAGAGGGATGTTTGATTGATGAATTGCGCATTTGCTGTTTATACCTCAATCGAAGATGATAACTTTCAAACA GGGAAAAAGAGAAGCCATTAGTTATTTAGAGCATAAGAAAAAACATTCTCGTAGGCAACCAAGGTTGCGGTACCCCACCG AGCAGCACCGCGTTGTCGACAGTTCGATGGCCTTCTTCCCTCTCACTGTCGCAAGCACTCGCTATTTCTACAAACCCAGA TTATGGCTATGGAAACTATGGGTTGCACGATTAGAGACCTTGGAGATGCACCATGAAGAGAACGTGGTTGAGAGATAGTT TTTAAAACACAACCAAAATAAAGAAACCACTTTTTGTGGTTTTGAAAAACCGAGTAAAACTGTTTTGAAAGTTTTAAAAA ACCGATTGAAAACCATTTTAGCCGACGTGTTTCGTTTTAAAAATGACATTTAAAAACCAAAAACCACAAACTTACAAGTT GCAACCACCCCGAACGGGGCCTACTTGAGTGTTGCAAGGTTGTCAAAATCGAGATCCTTCTTTAAGATCAAGATAGGGGG GGGGTAAAGGATCATAAAACATGTGATCGTATGAATAGTACTATCCTGCCAAAACTTAAGTCTCTTTTAATATAAATATG GTCATATAAATTAGCTAATATATGTAATAATAACACTAAAATTCAAGAATTCAGATATTTATTTTGTAGCTATTATATTG TTCATAGCTAAATGTCTATTTCATGATATTTATCTGGCTGGTTTTCTTCTATCTCATTAGCAGTGTTATTAAACTTGAAC CGATTATCGACTCGGTCAGGGTACCGGGTTGATGGGTTACAGGTCGAACCAGTGAGTCTAGTTGAACCCGTTGACTCGGT ATCTATTAAAAAATATAACAAACTAACACTAATTAGCAATTCACATTCTAAATTTAAAATTATTACCATCATATGAGTAT CTAATTAAACTAAAAATAATTTGCTGCAATAAAATCTTACAATTTATTATGGTCATATCACTACCTAAAGTAATGTAAAA AAAATTTATTCAAATCAGGAAGGATTTCTTTGTCCACTAGTTTAGCAAAAGGGAAAAGAACATGGCAACCTCGTGATGGC TGTAAAACGATAACCCAGGAACAGGCACAGTGAGGACGGCCCCTAACTCGAGGGCACAACTTTGTTGCAGCTTTGTTGCG AATCTGTGAGAGGAGAATGCAATGTCGTTTTTTTATGTTTTACAACTCGCCGGTTCATTAAAAAACCGACCGAGTCACTG GTTTTGATGTAAACCGGCCGAGTCATACCGGTTCTCACCGGTTCAGTTGCACAGCTGATCTGATCCTCGACTTGATTTAT AGTCTGACTGGTTCAACCGGCCGGTCCAAGCCGAGTTTAATAACACTGCTCATTAGCATATTTTTCTTTTAGCAACAACA ATCTATATCCATATTGGGTATTTATATTTGTTATTTTGTGAAGAAGATGATTGTAATATAGACTTCTGCTATATGTAGTT TTCTTTGATTTTAAGGTTTCACATCAATTCGATGTTTTGCAAAACTAATTCAATAAAATTTGTGCTTGTGGTTTTTATAT TTCTTCTTCTTTTGTTTTTATCTATTTTTTTCCCCTTAGCTTCCGAAATTGCAGCAGATGGAGAATCACATCCAGAGACC AGAGTTCCTCATTCGGGTAATTAAACATAGGAAGTTCTCCATTGGAGCAGAGAAGCCAATGCCAAGAAAGTCTATTGCAT ATCATGGAGTTTTAGGGTATGATATAGACTATTCCCTTTGAAGATTGTAGGTCTTTTAGTACCTCATTAATATTAATTCT TCTCTGGATTCCTCTCGTGAATTTTTCCATTTTTGTTCTGCATCAACCAGATAGTGTGTTATAGCTTTTAATCCCGTTTG GCGCCCTGACCTCGATTGGGGATAGGAACAGGGACAACCCCCCCCCAGAAAAATTTGGGGACCGGGATGGGGTTCATTGT CCCAGCCCCATAAAATACTATAATACCCTTACAAATATTGGATGACTTATAATGAAGACTTTCATTTGGATGAGTTGGAT GGTCGAGGGAATGTTTTGAGTGTTTGGTGAATGTACAATTTTATTCTTACTCTGAAGTCTAATTCTGTAAAATAGAAAAA TGCACACATGCATGATCTTCTAGTTTTTTTTTCTGACATGGATCCTGAAATGAAATACAAACATGCACAAGAGTTTAACA ATAGTTGAAATTATTAATTAATTTTATGATAGATGGTAATTTTTTTAATTTAATGATTCTTTTAAAATTACTTTCTGATA ACCAAAAAGAAAAGATGCTTTTCTGACATTTGCAATGAAATTGAAATTGGCTAGACTTCGTGATAACCATTTGAAGTGAT ATACTTGTTTCTATTCCGTTAGATATGCCCATTATATAATCAACTTCTGTTCTTTCTCTTAAATTTAATGGTCTGCTCCC CAGTCTATTGTAAACAAACAGTCATGAAAGAAAAGACTAAAAGTTGTTCATGTTTTGGACAGAGTTGATGAAGAGTATCT ATATGTTGATGGAATTGGCATAAAAAAAGGAGATATCTTTCAGTTCTACCATTCAGATCCTAATGCAGCGTTAGTGTCAT TAACGGTGGTCCATGATGTGCTCAACAATATTAAGATGGGAAAAAATTCCAGGAGGTTCATGGGTGATGGAGACAACAGC ATTAATGTTTTCGGCGGTTTTATTTTTGCTTGCTATGGCCGTGGTGAATCATTCTTTGGACGTCATGATGTGGATAGCTC CCCATTCTTGGAGAATTTCCCAGGAGTGCCATTGGGTGGCATATTTTGTTGTGGTGAAATAGTTCGTCCTTGTACCCCTT TGATTGGCCAGCATCAAGGAGCAGGCCCCATTAGTTTCTGTTTGCATACTTATGGCACTGTCTATTTAGTGATGTCATAT GCTCCTCCCTCTGTGGAACAATAGATGCTGCTCATGTTTTGTTCTCGTGATGTACATTGCTAGTTTATGGAGGATGCTCT ATCCTATGGTGTATCAGATAATACCATTTTGTTACATGGAGATGGAGTTTACTTGTTTTACTATCACAAAATCACTATGA AACTGACTTCCAAGTCTTTTGTAATCTTTTCACGGGTTTGTGTGGTGGTTAGAATAAATAATATAAAAAAGTTGATAAAT ATAATTTAGATTGCCATTGGATCACAACTGCACCATTCTGCTGTTATTTCATTACAGTGTAGGAAAATTTTCCCA
CDS sequence (LotjaGi1g1v0337400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGTGAGTTTGCTGAACGAGGACCTTCTTCACAACATTCTAACCAGGCTTCCTGCCCTATCGTTCGCTTCAGCAAC TTGCGTTAGCAAAACGTGGAACTCTGTCTCCAATCGCATCCTTTCTCGTCCCAAGCTCTCCTCTGCGCTTTCTCTCAACC CTTCACCCAACGATGCAGTGAATGAGGTTCTTCACAAGATTCTGTCCGAGCCCATCCGACCTCATTTTGCTATTGTCAAT CTTGCAGTTGGATTCGGAGCGTCCAAGATTCTGTGGCTTGTTACAAAGACATTGGGTTCCGATATTCCAGTTATTGTCTC CGTGACAAATGGTATTATGGGAAGGGATGCTCTTACGGGTGAATTTAAAGAGGTCAAGTGGGATGCCGATGCGCTTATAA GTGCCATTGTAGATGAGGGCATAGTGTTGACTGTTGGCTACTTGCCAGGATTAAAAGTTGAAGCTATACCATTGCAAAGA CCAGCCAAGACACCTCAAGAACCATGGATTGACAATTTTGTGATGGATATCAAGGAATATTCTGCCTCTGTCTCCAGTTG CCAATTCCCTGTTGGGATTATGCTGTTCGGAGAAGCAACCTCTGACATGGAACTGCTTCTGAAGAAATTGGACTATGCCA TGCCGATGGACACATTCATTGTGGGTAATGAGCGAGGCTCCGTTGTATACAGAAGTGGAAATGATTATAGGAGCATCTGT GATAATACAAAGGACATAGAAGCTGTTGCTCTTGTATTTGCTCAAGACAAAGACAGGTCTTCTGGAAGTATTAGATTTCA TATTGCATTCTCAAACGGTGTTTCAACTGTGGGTGCTAGATACAAGGCAGATTCAGTTCAAACAAACTTCGATGTATGTT CTACAAGGCTAATGGCTAGGCGGGAAGGGCAGCAGGAACTTCTTGATGGTCAGAGTATTCTACTTGAGCTTAAAAATTCG CTTCCGAAATTGCAGCAGATGGAGAATCACATCCAGAGACCAGAGTTCCTCATTCGGGTAATTAAACATAGGAAGTTCTC CATTGGAGCAGAGAAGCCAATGCCAAGAAAGTCTATTGCATATCATGGAGTTTTAGGAGTTGATGAAGAGTATCTATATG TTGATGGAATTGGCATAAAAAAAGGAGATATCTTTCAGTTCTACCATTCAGATCCTAATGCAGCGTTAGTGTCATTAACG GTGGTCCATGATGTGCTCAACAATATTAAGATGGGAAAAAATTCCAGGAGGTTCATGGGTGATGGAGACAACAGCATTAA TGTTTTCGGCGGTTTTATTTTTGCTTGCTATGGCCGTGGTGAATCATTCTTTGGACGTCATGATGTGGATAGCTCCCCAT TCTTGGAGAATTTCCCAGGAGTGCCATTGGGTGGCATATTTTGTTGTGGTGAAATAGTTCGTCCTTGTACCCCTTTGATT GGCCAGCATCAAGGAGCAGGCCCCATTAGTTTCTGTTTGCATACTTATGGCACTGTCTATTTAGTGATGTCATATGCTCC TCCCTCTGTGGAACAATAG
Protein sequence (LotjaGi1g1v0337400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVSLLNEDLLHNILTRLPALSFASATCVSKTWNSVSNRILSRPKLSSALSLNPSPNDAVNEVLHKILSEPIRPHFAIVN LAVGFGASKILWLVTKTLGSDIPVIVSVTNGIMGRDALTGEFKEVKWDADALISAIVDEGIVLTVGYLPGLKVEAIPLQR PAKTPQEPWIDNFVMDIKEYSASVSSCQFPVGIMLFGEATSDMELLLKKLDYAMPMDTFIVGNERGSVVYRSGNDYRSIC DNTKDIEAVALVFAQDKDRSSGSIRFHIAFSNGVSTVGARYKADSVQTNFDVCSTRLMARREGQQELLDGQSILLELKNS LPKLQQMENHIQRPEFLIRVIKHRKFSIGAEKPMPRKSIAYHGVLGVDEEYLYVDGIGIKKGDIFQFYHSDPNAALVSLT VVHDVLNNIKMGKNSRRFMGDGDNSINVFGGFIFACYGRGESFFGRHDVDSSPFLENFPGVPLGGIFCCGEIVRPCTPLI GQHQGAGPISFCLHTYGTVYLVMSYAPPSVEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 509 | 507 | 5.3E-160 | – | |
PANTHER | 3 | 509 | 507 | 5.3E-160 | – | |
SUPERFAMILY | 3 | 38 | 36 | 8.37E-8 | ||
Pfam | 4 | 45 | 42 | 5.1E-6 | ||
SMART | 6 | 46 | 41 | 6.0E-4 | ||
SMART | 335 | 475 | 141 | 0.0093 | ||
Pfam | 360 | 473 | 114 | 4.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0337400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…