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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0342700 |
| Transcript ID | LotjaGi1g1v0342700.3 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Golgi-body localization protein domain isoform 4; TAIR: AT1G58250.1 HYPERSENSITIVE TO PI STARVATION 4; Swiss-Prot: sp|Q6IMT1|SAB_ARATH Protein SABRE; TrEMBL-Plants: tr|A0A0B2PG20|A0A0B2PG20_GLYSO UPF0378 protein KIAA0100-like protein; Found in the gene: LotjaGi1g1v0342700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:80491305..80494977) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGCTTCTCCTGTCAATTTCCTCTTCGGATTCTTGCTGCTTTCTATTACATTGTGGCTTCTCTTCATGTAAGTCCC TGCTTCACTTTTTTGCTTACTGAATTTATCGCATTCGTTGTTTTTTAACTGCTTAGCTGTTTAGGTTGGAGAATATGTTG CTTTTTTAGGGTGGACTTAGTAGTATGACAGTTTGGTATGTAAGGGGCAATCAATTTTACCAGTTAGGTATGTTATCAGG GGGAATTGTTCTAGAATTCTAGCACTTAGCACTACACTACACTGTAGAAGACATCGTATTCATTCTCTGTTTCTAAGAAT AGGGAGTTCCGTTGAGCAGTTTACCATCTAATCGTAATTCAGTCAACAACATTAACTCGCTCAAAAATCCCACCCGGTAA ACCTCAGTGTAGATAAGGACTGGATGCATTAAGACCTGTTGCATAGAACAGACGAGTAGTGCTTGATGAATACTCTTCAA TGTATGTGAGCGTGATCAAATTATATTGAAGATACCAACAAGGTGTAGCACAACTGGTAGATAGTTGGGCTCCTTAACCA TCTAGTCCAGGGTTTGATTACTGGGTGATGCGTATGGAGAAGCATTTGTTGGGAGAGGCCTACCCACTTAACGTGATCTC AGAGCCTCGAGGGATTAGTCTCATGGCTGTCGGCGGTGGGATACCTTAGGAAACAAAAAAAAAATTATATTGAAGATAAT AAAAGAGCACAAATCAAGTTTATAATCTTCGTGCCTACTCATATTCTTTAGCTGACATATGAGGGTTAGACTAGTTTGTA TTAGTTTGTTATGACAGCTGTGTAGCCAGCTTTGCTTGATAAGTACTCTATGATATATATGAGCTTTATCAAATTATATA GAAGATAATGAAAGAGCATATGATATGAGAGTCTGTTAGTGGATGTATATGGTTCGACTGTTATGTTGTTAGACTAGTTT GTATTAGTTTGTTATGCCAGCTGTGTGTGCACAATTGTATTTCTGTTAAGGTAGTTATTGTAGTTAGTTACCTAACAGAT TAATTAGCTTCTCTTGTAAGCTTCGTCTCTTCTACATAAGAGCTACATCTTGTAAATCTGAACAGTAATGAATATGTCTA TTTGTTCTTCTCAAAATGCATTTCTCTCGTATAAGAACTTATTCGTAAGCTAATTTAAGAAGCTCTTTGAAATAAGTTCA TAACAACTTATACGAAGATCATAAGCTATGATTGAAGTCCCACATTGGCTTGAGATATGGCATAGATAGTCTTTATAAAG GGTAGAATAGCTCTCAACGCTTGAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCAAATTCTAATAGATATCTCAACAAGCT ATTTACATAAGCTCTTCCAAACACTTGCATATGCGCTTATGACATAGGTTTAGCTCAAATAACTCTTCCAATTGGGTCTG TGGATATCTTGGTATACGTTGATGATATTATTGTTGCAGGAAGTTCAACATTCTTTGTCCATCATTTCATTGACAAATTG TATTATGTGTTTGCTATTAAGCAACTAGGTAAACTTTTCACTTTTGTTTTTTCCTGGGCGGCGATGCTAGAGAAGGAAAA GCTGGTGGGGCCAATTGTTAGGATTTAGAAACCCTAAGAGCAGCCACAAGTTAAAAGGGGGAAAATTGGAATAGTTTTTG GTATTTTTGAATATTTAAAACTGGAAAGTAAACAAGAAAAGAGAAGGGACAAGATTTAAAGAGAGTGATACGAAAAACAA TCCTGATGGATTCACAAGAAGGAGAACCTTCTTTCAAGTGAGAATCTCTTCCAAGGGCAATCCTTTTACAAATCTAATAC TCAAACCATACTCTAACCTAAGGAGAGTACTCCTATTTATAATAATCTAACACTAGTAAGCAAATGACTCTGGCCCAACA TAGGCCCAACTCAAATAACAAAAGCAACTCAATACCAAAGCAAATAACAAAAGCAAACAAATAAAATTAGTTGTATTCAT TCAATCAATACAATCAGAAATACATGTCTCTCTCTTTCTGAATTCTATGCTTTTTGTTGTCGATTGATAGCTGTAATAAC GAAAGAGTGTTGGTATCCTTTGTAATTCTGTTGGTGCCAGCTGTACAAGCTGCTAAGATTAGTTGTTAGCAGTTACAAAC TGTTACATTCTGTTATAGCCAGCAGCAATAGCTGTTACAGTTAGTTAGTCTAAATCTCTTCTATAAATACGTTATTCACA CAATCAAATCAGTCAAGGAAGTCATTCAGAAATTTCCTCATCTCTCTCTCTCTCTCTCTCTATCCTTTCTACAATTTCTA CATCCTCTTTGTTTTTCACACTAATAGTTTGAAGAAATTATATAAAAGTTATTTGAATAGAAGTGGCAAGTGGCAACAGA ACCGACCATTCTTATATGGTCCAAAAGAAATAAAAAACTGACAAAATGATTGTTTTTGGGGTGGGGGTTTAAAGAATTCT GCCTTCAAGAGAGAGTACTCAACATGGGTGAAGTCACTTTAGATACGTTTGGGATGAAAATCTCAAAATTTTATTGTTAA TGTTAGTAATATAATATAAAACCATTCATGTAACCCTTACCCAACAGCTTAAGCTTTTGGGATAATTGGTTATTTGACTG TTAACTTATATTCTAGTGATGATTTTTGCATAGTTCTCACCATATTTTGGTGCTTTTTGTCCAGGTGCAATTGATGATAA CATTACATGCCTTTTGATTAAGATTGAGTCTTATGTTCTCATTACTTTATTTTACAATGTAGAAAATATGGATAATTATG TCCCTTGATTTGCTTTTTTTATACATCTTAATTACAGATTTGCTTCTGGGTTGCTGGCATGGATTTTGAGCTGGATTTTG GGAGCATCTGTTGGGTTCCGTGTTGGTGGATGGAAATGTTTAAGGGATGTGGTAGTGAAGTTTAAAAAGGTTTTTCTTCA CTTTTTCCCCCCTTATTTCATTTTTAGAAATTTGAAGGGCATTGGGCAGAGATTTACACCCATCTACAGTTTGAGAGAGT AAAGTGCACTCAGTGCTGGGTTTTTATTTTGATAAATGATGTAAATATTGAATGACTAAATTATTGTTTAAGATTTTCCT TTAATAATATTTTCACACCGAGTTTTCCCCCGGCTCTTGAATCTGGGGATAACTTGCTTCAGCTTCTTTATACAAACACA CTCTGGATCCTAGCTAAAATCCTGTATTTTCATTGCACTGAGTTGTTATGTCTGTCTCTGTTATCAGACTGGTGTCTTTA ATGGCTCATGAAAATATAACTCATTTATATCATGTACAGGGTACTGTGGAATCTATATCTGTTGGTGAAATTAAACTTAG CTTACGCCAGTCCCTGGTCAAACTTGGTGTGGGTTTCATTTCTCGTGATCCGAAGCTGCAAGTGTTAATATGCGACTTAG AAGTTGTAATGAGGCCTTCAAATAAAAGCCCGGGGAAGAAGAAAATCAAGAAATCCCGTGCTTCAGGCAAGGGAAAGTGG ATGATTGTAGGCAATATTGCAAGATATTTGTCAGTTGGTGTGACTGATCTGGTTCTGAAGGTGAACAGCTCCATAAAATT GTATTGTTCTGCTTGTATGGTCGTCAAATATGCTGACTTTATTTTCATACTGATGTGTGTGTGTGGCACTTAA
CDS sequence (LotjaGi1g1v0342700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTTCTCCTGTCAATTTCCTCTTCGGATTCTTGCTGCTTTCTATTACATTGTGGCTTCTCTTCATATTTGCTTC TGGGTTGCTGGCATGGATTTTGAGCTGGATTTTGGGAGCATCTGTTGGGTTCCGTGTTGGTGGATGGAAATGTTTAAGGG ATGTGGTAGTGAAGTTTAAAAAGGGTACTGTGGAATCTATATCTGTTGGTGAAATTAAACTTAGCTTACGCCAGTCCCTG GTCAAACTTGGTGTGGGTTTCATTTCTCGTGATCCGAAGCTGCAAGTGTTAATATGCGACTTAGAAGTTGTAATGAGGCC TTCAAATAAAAGCCCGGGGAAGAAGAAAATCAAGAAATCCCGTGCTTCAGGCAAGGGAAAGTGGATGATTGTAGGCAATA TTGCAAGATATTTGTCAGTTGGTGTGACTGATCTGGTTCTGAAGGTGAACAGCTCCATAAAATTGTATTGTTCTGCTTGT ATGGTCGTCAAATATGCTGACTTTATTTTCATACTGATGTGTGTGTGTGGCACTTAA
Protein sequence (LotjaGi1g1v0342700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASPVNFLFGFLLLSITLWLLFIFASGLLAWILSWILGASVGFRVGGWKCLRDVVVKFKKGTVESISVGEIKLSLRQSL VKLGVGFISRDPKLQVLICDLEVVMRPSNKSPGKKKIKKSRASGKGKWMIVGNIARYLSVGVTDLVLKVNSSIKLYCSAC MVVKYADFIFILMCVCGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 4 | 152 | 149 | 1.7E-39 | – | |
| PANTHER | 4 | 152 | 149 | 1.7E-39 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 12 | 38 | 27 | - | – | |
| Phobius | 39 | 127 | 89 | - | – | |
| Phobius | 128 | 147 | 20 | - | – | |
| Phobius | 148 | 152 | 5 | - | – | |
| Phobius | 153 | 176 | 24 | - | – | |
| Phobius | 177 | 178 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0342700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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