Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0366800 |
| Transcript ID | LotjaGi1g1v0366800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc transporter; TAIR: AT1G60960.1 iron regulated transporter 3; Swiss-Prot: sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic; TrEMBL-Plants: tr|G7J7M9|G7J7M9_MEDTR ZIP zinc/iron transport family protein; Found in the gene: LotjaGi1g1v0366800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84470960..84473801) extracted from Lotus japonicus Gifu genome v1.2.
CATCTAGTAATCAAGAGAATCACATAGAAGTGATGCAAGAATGTCGACACTATGACCATTTTTTTCCCCCTAAAACTCAA CTTAAGCATCCATCTTTCTATTCTCTCACTTCCTCTGTCATTCAAATGTCGACACTCTTCTTCTCTAACACTCCATGATG CCATTCTTTTCCCAATCTCAATCTCAAACACTGTCTCTCCATAGTTCTTCCATTTTCTTATTTATATTACTTCTTATCAA ATTCAGTTTTCTCCACATTGCTCATTCCAATAACAACTCTGTTATTCTCTTCATCCCATGTTTTTTATTGAGGTTTGTTA TTGTTCTCACTTTCCCCTGTTTTGCTTTGCTCTTTATTCTGCAACTTTCTCTGTATTCAAGAAGAATTATTATAGCTTTC TTCTCCTCTCTTTTTTCTCAGGATTCCTGGGAACTGCTTCAGCTTCTCATTGGAAAAACAGGTAATTCTTTTCTTGCAAC CAAACTGCTTCTTCTTCTTCTTCCCCTGTTTTCCTCTGTTTTCCCCTGTTTTGCTCTGTTTTTTTCACCAATTTTGAATG TAACAAGTTATCAAATTCAATTCCCCTTTTCTCACCCACCCAGATTGCAAGTTCTAATCTTTACAACTCGCAATCATAGG TGAATCAATTTTTTTCAAAAGGGGTTTCTTCAATTCTTCTAAACTCTTGAGCCGGTGTTGCTGTTTTTCCCAAATTAGTG AAAGAACCGATTTCTCATCATTCAACGATGAACTCCACCGCTTGTGGAGGCGGCGGCGCCGGGGAAGAACTCTGTCGAGA TGACTCAGCAGCGTTTGTTCTCAAGTTCGTCGCCATGGCGTCCATTCTCCTTGCCGGCATGGCCGGAATTGCCATCCCTC TCATCGGGAAACACCGCCGCTTCCTCCGCACCGATGGGAACCTCTTCGTCGCCGCCAAGGCCTTCGCGGCGGGGGTGATT CTTGCTACCGGGTTCGTCCACATGCTCTCCGACGCGACGAAAGCGCTCAACAGTCCTTGCTTGCCGGAGTTTCCATGGTC CAAGTTTCCCTTCACCGGTTTCTTTGCTATGGTGGCGGCGCTATTCACACTCCTCCTTGACTTCGTCGGAACTCAGTACT ACGAGCGGAAGCAGGGGCTGAACCGTGTCCCCGACGAGCAAACGCGGGTCGGGTCGTCGGAGCCTGAAACCGTGAAGGTG TTTGGGGAAGAAGAGAGCGGTGGAATGCACATTGTGGGGATGCATGCACACGCGGCGCATCATAGACACAACCACCCTCA TGGACAGGACGCGTGTCACGGCATTGGCGGCGTCAAGGAGCACGGCCATGCTCACGCTCACGGCCATGCTCTCATAAGTG TTGCTGATGACGGCGAAGAAATTGATGTCAGACACGTTGTTGTTTCACAGGTATCTATCTGTTTGTTATTTATTAGTTTT CATGGTTTTGCTTGATACATCATTGCCAATCAAACATGTTTAAGCTCAACTGATATTCGAACACTGCATTTAGATTTATC ACTTTTTCTAAGATGAAGTGTGTGTTTGTTTATCCATTGCCTTAGATGTGAATTTGAGTTTTCTCAATGCAACAACTTTG CATGGTTGGAAAGATTGGCTTGAAAGCCAAATATGTCAGTTGAATAATGTGTTTGTGACTAGACAGGTTAATGTGCTTTC AACTGGAAATCTAACACAGCCAAATATGTCAGTTTAACTGGCTTTCAACTAAGAACCAACACTTCCAAGTGATTGAGATG AAAGTTTCTTTATGCTCCACTACTATTCAAAGACACATTTAGATGTACCATTTTTTCTAAGAAGAAGTATGTGTTTGTTT ATAGACTGAATCAGATGCGAATGTGTTTATTCTCAATCAAAAACTTTGCTCAGTAAGAAAATTTGTCTTGTAATTGAATC CAAATATACTCAAAGGATGCTATGTACTATGTAGTATTGACAACTGTGCTTTGTGAAGATGACAATGACATGTTAAATGC TTGTGTTTTTCAGGTCTTGGAGCTTGGGATTGTATCACATTCAGTGATAATTGGGTTGTCTCTGGGAGTTTCACAGAGTC CTTGTACCATAAGGCCTCTGATTGCTGCACTATCTTTCCATCAGTTCTTTGAAGGGTTTGCACTTGGAGGCTGCATTTCT CAGGCACAGTTCAAGACTTCATCAGCAACAATCATGGCTTGTTTCTTTGCACTGACTACCCCGGTGGGTATAGGCATTGG AACTGGTATTGCTTCAGTGTATAACCCTTACAGCGCTGGCGCCCTTGTAGCAGAAGGGATTTTGGACTCGTTGTCAGCAG GGATTTTAGTGTACATGGCTTTAGTGGACTTGATAGCTGCTGATTTTCTCAGCAAAAGAATGAGTTGTAATTTTAGGCTG CAGATAGTTTCTTATTGCATGCTTTTCCTTGGTGCTGGATTAATGTCCTCGCTTGCAATATGGGCATGAAAATCGTCTCA ATGTAGTTGTAACTGTGTTGTTCAATTTTGATTTATATCTTTATATTTCTTTCTTCAATGCACATTGTATAAACTTCCAT TCCTGATGAAGCCTCCTCCAATGCTAGAATTGCAATTAGAGTTCATACCTTGAAAACTAACATCAAGGCTAGACCATTTT TATCTATGTATGCTGATCTGGTTGATGGTATATCTTGTATAAGCAGTTGTCATTGAAATCAAGCTTGTATTGGGGATGTC TTTTGGGAGATAGACATAAAAACTTAACATGATAAAGCATGAGAAAATTTTCACATGAGAGGATCTTCTTCCCGGTCTAG GAGTATTTTTTTTATCTCCTTCCTTACATTGACTTTATGTGT
CDS sequence (LotjaGi1g1v0366800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTTATTGAGGATTCCTGGGAACTGCTTCAGCTTCTCATTGGAAAAACAGTGAAAGAACCGATTTCTCATCATTC AACGATGAACTCCACCGCTTGTGGAGGCGGCGGCGCCGGGGAAGAACTCTGTCGAGATGACTCAGCAGCGTTTGTTCTCA AGTTCGTCGCCATGGCGTCCATTCTCCTTGCCGGCATGGCCGGAATTGCCATCCCTCTCATCGGGAAACACCGCCGCTTC CTCCGCACCGATGGGAACCTCTTCGTCGCCGCCAAGGCCTTCGCGGCGGGGGTGATTCTTGCTACCGGGTTCGTCCACAT GCTCTCCGACGCGACGAAAGCGCTCAACAGTCCTTGCTTGCCGGAGTTTCCATGGTCCAAGTTTCCCTTCACCGGTTTCT TTGCTATGGTGGCGGCGCTATTCACACTCCTCCTTGACTTCGTCGGAACTCAGTACTACGAGCGGAAGCAGGGGCTGAAC CGTGTCCCCGACGAGCAAACGCGGGTCGGGTCGTCGGAGCCTGAAACCGTGAAGGTGTTTGGGGAAGAAGAGAGCGGTGG AATGCACATTGTGGGGATGCATGCACACGCGGCGCATCATAGACACAACCACCCTCATGGACAGGACGCGTGTCACGGCA TTGGCGGCGTCAAGGAGCACGGCCATGCTCACGCTCACGGCCATGCTCTCATAAGTGTTGCTGATGACGGCGAAGAAATT GATGTCAGACACGTTGTTGTTTCACAGGTCTTGGAGCTTGGGATTGTATCACATTCAGTGATAATTGGGTTGTCTCTGGG AGTTTCACAGAGTCCTTGTACCATAAGGCCTCTGATTGCTGCACTATCTTTCCATCAGTTCTTTGAAGGGTTTGCACTTG GAGGCTGCATTTCTCAGGCACAGTTCAAGACTTCATCAGCAACAATCATGGCTTGTTTCTTTGCACTGACTACCCCGGTG GGTATAGGCATTGGAACTGGTATTGCTTCAGTGTATAACCCTTACAGCGCTGGCGCCCTTGTAGCAGAAGGGATTTTGGA CTCGTTGTCAGCAGGGATTTTAGTGTACATGGCTTTAGTGGACTTGATAGCTGCTGATTTTCTCAGCAAAAGAATGAGTT GTAATTTTAGGCTGCAGATAGTTTCTTATTGCATGCTTTTCCTTGGTGCTGGATTAATGTCCTCGCTTGCAATATGGGCA TGA
Protein sequence (LotjaGi1g1v0366800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFIEDSWELLQLLIGKTVKEPISHHSTMNSTACGGGGAGEELCRDDSAAFVLKFVAMASILLAGMAGIAIPLIGKHRRF LRTDGNLFVAAKAFAAGVILATGFVHMLSDATKALNSPCLPEFPWSKFPFTGFFAMVAALFTLLLDFVGTQYYERKQGLN RVPDEQTRVGSSEPETVKVFGEEESGGMHIVGMHAHAAHHRHNHPHGQDACHGIGGVKEHGHAHAHGHALISVADDGEEI DVRHVVVSQVLELGIVSHSVIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKTSSATIMACFFALTTPV GIGIGTGIASVYNPYSAGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCMLFLGAGLMSSLAIWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 54 | 54 | - | – | |
| PANTHER | 32 | 400 | 369 | 1.8E-213 | – | |
| PANTHER | 32 | 400 | 369 | 1.8E-213 | – | |
| TIGRFAM | 41 | 400 | 360 | 2.3E-135 | ||
| Pfam | 52 | 397 | 346 | 1.4E-77 | ||
| Phobius | 55 | 75 | 21 | - | – | |
| TMHMM | 55 | 74 | 20 | - | – | |
| Phobius | 76 | 86 | 11 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 87 | 108 | 22 | - | – | |
| Phobius | 109 | 127 | 19 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 128 | 148 | 21 | - | – | |
| Phobius | 149 | 306 | 158 | - | – | |
| Phobius | 307 | 329 | 23 | - | – | |
| TMHMM | 309 | 331 | 23 | - | – | |
| Phobius | 330 | 348 | 19 | - | – | |
| TMHMM | 346 | 368 | 23 | - | – | |
| Phobius | 349 | 368 | 20 | - | – | |
| Phobius | 369 | 379 | 11 | - | – | |
| TMHMM | 380 | 399 | 20 | - | – | |
| Phobius | 380 | 399 | 20 | - | – | |
| Phobius | 400 | 400 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi1g1v0366800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…