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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0376300 |
Transcript ID | LotjaGi1g1v0376300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7KIC8|K7KIC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85527494..85533263) extracted from Lotus japonicus Gifu genome v1.2.
CAGGGAAAGAGGGTTATATGATATCCCTTATTCCGGATTAGGGTTAATCTTCAACATTGCGCAGAGTCATCACCAGTCAC CCCATTACAGCAATCGGTAAAAAGCTTCAAACTTTTTTCACCCCTTTACTTCCAAACGTGAAAAACCTCCAAACTTTCTT CACCATTGTGCTTTAGAACATGAATTGAATTGTCTTGTTTGGTAATGAATTCACATGTTCCTGTCACACAGACAGAGCAA AACAGCATACAACATTGGTGTTAACTGTTAAGATTCTTGTCAAGGCACAATGAGTAACCAAAATGGTTCAAGCAATGACC GGTCAAGGATGCATTGGACTCCATTGATGGAGCGTTACTTCATTGATCTAATGTTGGAGCATTTGCAGAGAGGAAACATG GTTGGCCACACTTTCAACAAGGATGCTTGGACAGACATGCTCACCATGTTCAATGCCAAGTTTGGTTCACAGTGTGATAA GGATGTCTTGAAAGCTCGTTATACTAATCTGTGGAAGCAGTTCAATGATGTCAAGAACATTCTATCTCACTTTGGTTTTT CTTGGGATGCTGTGCATCAAAGGGTTGTGGCTGATGATTTTGTTTGGGAGGATTATATCAAGGCTCACCCTGATGCACGG TGCTTTAGGACTAAACCAGTGCTTAACTTTGATGATTTGTGCATGATATATGCTCACACCTTTGCTGGTGGAAGATATAG TTTATCAAGCCATGATGTAAGCCTTGATGATCAAATGCCAGGACTGCATTTGCCCTCAGGTGAGTGTTACTTTCAGACCT TCAATGTTCCCATATAACATGCATTACAGTAGAAACTAAATTACGGTCTTGTTTGGAAGAGCTTATTTTAACTTATTTTG TAGTATAAATGCTTATGCAAGTGTTTAAATAACTCATGAGTCATGACCTCTATATAAGCTGTTTTGATCTTATTCTCATA GCTACTCAGTTTAGCTTATGCATGCTTCTCAACATACCTACAGGCTAGAACATATTTGAGCTTATTTCAATAAGCTTATC AAATTAGCTTATGAATAAGAGCTTATCCGGTAAGCACTTATTGCCATTAGTGCTTAATTATGTTGTTTACCCAATTTCAC CCATATAGTTTTCCTTAATTGACAATTGTTTTGGTGGTTATTGCAACTCATGCAATAAACTTATGGTAATGGGAGCTTAT CTTAATTATGTATTCTGCAACTTGTAGGTGATGGAACAGGAAGCTCTGCTGTATCAAGTAATGAGCTGCTCAAGACAGAT TGGACTGCTTCAATGGACCAATTTTTCGTTGAGCTTTTGCTTGATCAGTTGGGCAGGGGCAATCAAGTCAATAATTCATT CAATAAAAAGGCTTGGACAGATATGCTAGCCATGTTCAATGCTAAATTTGGATCTCAACATGGTAAAAGGATTTTAAAGA ATCGATTCAAGAAACTGCTGAAATGTTACCGTGACATGACAAAACTTCTAAAACAAGGCTTTTTGTGGAATGAACAACAG CAGATGCTTGTCGCTGATGATGATGTCTGGGATGCTTATATCAAGGTATATGCCCAAGAAGGCTGGTATGTGAGAGGGGG GGTGTGTAGAGGAGTATATACATGCTTCCTGGCGCTGACTGTCTTAAAATTCTTGTAGGCACATCCACATGCACGTACAT ATAGATTGAAAACATTGCCAAACTATCATGATTTAGAATTATTATTCAGAAATGTGTGTGGAGATGAGATCAGTAATTTG CATCAGGAGAAAAATCATGAAGCTGTCATATCCGAAACAAAGAGGGGTGAGTAGCAACTAAAAGCATTCTCTTAGCTAAT TCAAGTCATTGCGTTACTATCTTGCATTTATTTAAAGAAAATTAACAACTTGGTCCATAATGGTAATGAAAAACTCATGG AAAATCAACTGGTGCACTTGTCTGAAGTTGTAGCTGAATGCAGAAACATTGAAGAAATAGAACTTTCTAAGTTAGTTAGT CGGTAAATACTTCTTATATCTTCCAATGTCCTTCTTATTAATGTTCATGGATATTTTCTTGTATGAAAAGACTAAAAATG TGCTTGTTACTTGAGAATTTAAAATAATCAACTCTGAAGGGGAATTTGGGATCCTTTTGCTCATGCAATTGTAATTTCAT GAACATCTGCATATTATATTGCAAAATATCTTGCAGTCCAAAATCAAAAGGGTTCAAATAGGTGGACATGATAAGTTCTC ATGCACTTCAAAAATTACTATTGTGATATTTAGGTTTATTTGATACTAGGAATAAATCAACACCCTATGTTATAATTCAT ACTTGAGTCCTTGAGGTCTTGGGACAACTGAGTAGTTACCTCGATGATTGTGTATCTTTCCTAAGGTGAACAAAAACGAA GGCGGAACCCAAGTGGTACTGATCGTACTAGAACATGTTGGACACCCCCGATGGATGCTTGCCTCATTGACTTGTTATTA GAGCAGGTCAAAAGGGGAAATAGACTTGGGCAAACATTCATTACCCGGGCTTGGAATGGCATGACTGTGTCTTTCAATGA ACAATTCAAATCTCAATATGACAAAGATGTTCTGAAGAATCGTTACAAACATTTGAAGAAACAGTTCAATGAGGTGGACA ATCTTCTTCAGCAGGATGGGTTCTCATGGGATGATACAAAAGAAATGGTTAATGCAGAGGATCATGTTTGGGATGCTTAT ACAAAGGTGACATTTTTTTTTACTCTGATTAGGCTTCTTAGATGTTCTATGGTTAAGTTAACATGCAATTTCTGCAGGCA CACCCTGAAACTCGATCACTTAGAGTTAAAACCTTACCAGGATATCACAAATTGTGTGTTATATTTGGAGAGGAATGTTC TGATTCTAGACATTTCAGTTTATCACATGATGCAGATCCCAGTAACGAATTATTAGTGTTGATAACAGGTATGTTTTCTG TACAGTTACAATAATAAAGCGCTATCTTGGACATGGACTGGTAGATTGAGAAATGTTGTATGGTTGTTGTTATATTATTA CTTCTTACATTCAAAACTGTCCATTAGCTACACCTACACCTTCTTAAGAGTAGAAAGTTAATTTTACTACCGATAATTTT ATTTGGGTCCCAAGCAAGTTCTCTGTTTACCGATTTATCCCAACTTACTATAGTAACTATGAAAAAGCCAAAATTCCGTA CTACTAATATCACAAAGTTCAATGTCATTTCACAAATTACACCTAACTATTGAAGCAGCAATTGATAACCCATAGTGTCT TCTTTAACATGTATTGACGACCAAATACTCTCCCCTTCCTTGAATCTTTTTCTTTGTTCCTGGCTATATTAGATTGTTTA CAATTAGGTAGCTTTTGAAGCAAAAATAGAATGGAATGGAACTGAAAGATTTTGTTCTGTTCTTGTCGGTTCCTCCCCAT CTTGTGGAATCAAGGCATATTAATATTTTTAACCTCATCATGTTTTGTACAATTCTTAAATACCAAATATAATATAAAAT CCGTAATCTGTCCCATTCTAACGCATTGAACAAATTCACCCTTAATTTTTTCTAGAAATTTTAGCCATGCTTGACATGTA ATGTTCTACCTCCATTCCTATTTATCTTTTCAGAGTGACAAGAAAACACACAAATCAATCTCAATCAATAAATACCTTCA ATTTGTTTGAGTTATTTATAGACTTTCTATTTGACCCTTTGAGCTTTGGACTACTCATATAGTAACTCAATACTGGAGAG TTTGTTGTGTTTAAGCATTACATGGCATAAGGATATTTAATGTTTTCTTGAACTACTATATTGTCAGATAAACATGGGCA AATTTTTTCTTCTCTAACTAGACAATAAATAGGAATGGAGGTAGTATCGTGTATTGGTATTAGGGGTAATCGTATTGGGA GTCTTTTTCAGACAAGCTTTTACTTTCTGTATTCTTATGGATATTTGGTTATTTACAATTTAAAGGTGAACAGAAGAATG CCACAGGTCCCAATGTTTATGATGCTGATTCTACAATAGAATGGATGGAATCAATGGAAATCTGTTTTGTTGACCTTATG ATTGAGCAACTAAACAGAGGAAAGAGGATTGGAGAGTTTTTCAATGAGTATGCATGGACCCAGGTGACTGAAGCATTCAA CGCTAGATTGGGACTCCAATGTGATAAGCAATTTCTCGTAGATCAGTATTTCTGCTTGATGAAAAAGCATAATGACATCA GCAAAATTCTCAGTCACAGTGGATTTACATGGGATGAAACTCTACAAACGGTAACTGCTGAGAATGATACCTGGGATGCA TATATTAAGGTCTTGTTCTCTATCCAATTCTCCCTTGTTTTTGTTTGCTATCATCATTCTGCAGTTGCATGATTGCATCT GTTGTAGACTTCTTTTAGTGCTCTAACACTCTGTTCTCTTAATCAGAGGTGTTTGCTCGCTTATCTGGAATAGTTTGTGA CCACTATCTATTTCTTCACAATCTTCTGATTGCAACTTGCTGCTGAATGATATTTGCAGGATCACCCAGATGCCGTATCA TATAAAAACAGGTTTTTGTATCTTTTCAATGATTTGTGCAAGATTTTCGGAAACAAAGTGATGCAAGTACCAGATGCAGG AGAGATTGCTCAGGATCAGCACCAGTTGATCGAAGCCAACGATGTCACCGTTGAGATCGATATGGACGGAACATGTGAAG ATCTGGCTGAGATTAGCAATTTTGATATATCCGATGAGGACTTAGACTGGCCAAGGGAATTGAACATGGATGGATCACCT GAAAATTTGGTTGAGAGTGGCAGCCCTAAAATTTCATTCCAAGATAAGAAAAAGCCAAGTGTGAACAATATGTTTGGAAT GTCTGGAATTTTGGATGGGACTATTAAAAATGAAATATCAAACCTAGATACAGAAAGACCTAAGGAAATGGGAATGGATA TAACAACATCTGGTGATTTTGCTGTGATTGGGAACACTCAAATAACATCTCAAGATAAGAAAAGGCCAAGCATAAACGGA ACAAGTGGTGATTTGGTGATGAGTGGCAACACAACAATAACACCTTGTGTTAAGAAAAGGCCTAGTTTAATGCCATCAGA ATCCAGGCCTGCCAAAAAGGAGCTGAGAATCAAAGAAGCTTTGTCTAAGATGGCAAGTGCTGTGAAGGCACTGGTGAATA AGAAAGAAAAGAACAACAACAAATCGTTTGAAAATGCATTGAGTGCACTTCAAGCTATGCCAGACATAGATGATGAGCTT GTAATGGAGGCGTGTGATCTTTTGGAAGATGAGAGAAAGACCGAGATATTTTTAGCTTTGAATGTCTCGTTGAGAAAGAA GTGGTTGCTCAGAAAGCTTCGGTGGTAACAGCCGCATGTCTTCCCTGTATAGTATTGTATATTAAAGCTTAGCCTGAGCA TGTTTGGAAAATTAACTGCAGCCTGTGAACATGTAGAATCGATTTAAGTTTTGAAAAACTACTCTTTGTAGCTTATAGAT ATAGAATAGATTCTGAGTTTGGAAAGTGAAATCCAAACATGCACTGTGTTTTGGTTTTTGTCATTTAACTTTCTGTTACA ATTCTTGAACTAAATTGAACTTTTCATTGTCCAGATTATCCTTCTTCTTCTCTAGCAAAATCACAGACATAATCCATAGT GAACTGCCTGTGTACAGTAACAGAAAGCCCGAGTTACTGCACCTTCTTAATTATTCTCTTGGCTTATAAAAAAAACCTTC TTAATTATTC
CDS sequence (LotjaGi1g1v0376300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTTGCCTCATTGACTTGTTATTAGAGCAGGTCAAAAGGGGAAATAGACTTGGGCAAACATTCATTACCCGGGC TTGGAATGGCATGACTGTGTCTTTCAATGAACAATTCAAATCTCAATATGACAAAGATGTTCTGAAGAATCGTTACAAAC ATTTGAAGAAACAGTTCAATGAGGTGGACAATCTTCTTCAGCAGGATGGGTTCTCATGGGATGATACAAAAGAAATGGTT AATGCAGAGGATCATGTTTGGGATGCTTATACAAAGGCACACCCTGAAACTCGATCACTTAGAGTTAAAACCTTACCAGG ATATCACAAATTGTGTGTTATATTTGGAGAGGAATGTTCTGATTCTAGACATTTCAGTTTATCACATGATGCAGATCCCA GTAACGAATTATTAGTGTTGATAACAGGTGAACAGAAGAATGCCACAGGTCCCAATGTTTATGATGCTGATTCTACAATA GAATGGATGGAATCAATGGAAATCTGTTTTGTTGACCTTATGATTGAGCAACTAAACAGAGGAAAGAGGATTGGAGAGTT TTTCAATGAGTATGCATGGACCCAGGTGACTGAAGCATTCAACGCTAGATTGGGACTCCAATGTGATAAGCAATTTCTCG TAGATCAGTATTTCTGCTTGATGAAAAAGCATAATGACATCAGCAAAATTCTCAGTCACAGTGGATTTACATGGGATGAA ACTCTACAAACGGTAACTGCTGAGAATGATACCTGGGATGCATATATTAAGGATCACCCAGATGCCGTATCATATAAAAA CAGGTTTTTGTATCTTTTCAATGATTTGTGCAAGATTTTCGGAAACAAAGTGATGCAAGTACCAGATGCAGGAGAGATTG CTCAGGATCAGCACCAGTTGATCGAAGCCAACGATGTCACCGTTGAGATCGATATGGACGGAACATGTGAAGATCTGGCT GAGATTAGCAATTTTGATATATCCGATGAGGACTTAGACTGGCCAAGGGAATTGAACATGGATGGATCACCTGAAAATTT GGTTGAGAGTGGCAGCCCTAAAATTTCATTCCAAGATAAGAAAAAGCCAAGTGTGAACAATATGTTTGGAATGTCTGGAA TTTTGGATGGGACTATTAAAAATGAAATATCAAACCTAGATACAGAAAGACCTAAGGAAATGGGAATGGATATAACAACA TCTGGTGATTTTGCTGTGATTGGGAACACTCAAATAACATCTCAAGATAAGAAAAGGCCAAGCATAAACGGAACAAGTGG TGATTTGGTGATGAGTGGCAACACAACAATAACACCTTGTGTTAAGAAAAGGCCTAGTTTAATGCCATCAGAATCCAGGC CTGCCAAAAAGGAGCTGAGAATCAAAGAAGCTTTGTCTAAGATGGCAAGTGCTGTGAAGGCACTGGTGAATAAGAAAGAA AAGAACAACAACAAATCGTTTGAAAATGCATTGAGTGCACTTCAAGCTATGCCAGACATAGATGATGAGCTTGTAATGGA GGCGTGTGATCTTTTGGAAGATGAGAGAAAGACCGAGATATTTTTAGCTTTGAATGTCTCGTTGAGAAAGAAGTGGTTGC TCAGAAAGCTTCGGTGGTAA
Protein sequence (LotjaGi1g1v0376300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDACLIDLLLEQVKRGNRLGQTFITRAWNGMTVSFNEQFKSQYDKDVLKNRYKHLKKQFNEVDNLLQQDGFSWDDTKEMV NAEDHVWDAYTKAHPETRSLRVKTLPGYHKLCVIFGEECSDSRHFSLSHDADPSNELLVLITGEQKNATGPNVYDADSTI EWMESMEICFVDLMIEQLNRGKRIGEFFNEYAWTQVTEAFNARLGLQCDKQFLVDQYFCLMKKHNDISKILSHSGFTWDE TLQTVTAENDTWDAYIKDHPDAVSYKNRFLYLFNDLCKIFGNKVMQVPDAGEIAQDQHQLIEANDVTVEIDMDGTCEDLA EISNFDISDEDLDWPRELNMDGSPENLVESGSPKISFQDKKKPSVNNMFGMSGILDGTIKNEISNLDTERPKEMGMDITT SGDFAVIGNTQITSQDKKRPSINGTSGDLVMSGNTTITPCVKKRPSLMPSESRPAKKELRIKEALSKMASAVKALVNKKE KNNNKSFENALSALQAMPDIDDELVMEACDLLEDERKTEIFLALNVSLRKKWLLRKLRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 135 | 135 | 8.7E-133 | – | |
PANTHER | 1 | 135 | 135 | 8.7E-133 | – | |
Pfam | 1 | 90 | 90 | 2.2E-29 | ||
Coils | 45 | 65 | 21 | - | – | |
PANTHER | 157 | 538 | 382 | 8.7E-133 | – | |
PANTHER | 157 | 538 | 382 | 8.7E-133 | – | |
Pfam | 161 | 255 | 95 | 2.5E-22 | ||
MobiDBLite | 414 | 435 | 22 | - | – | |
Coils | 477 | 497 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0376300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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