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LotjaGi1g1v0376300.1

Overview

Field Value
Gene ID LotjaGi1g1v0376300
Transcript ID LotjaGi1g1v0376300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7KIC8|K7KIC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:85527494..85533263) extracted from Lotus japonicus Gifu genome v1.2.

CAGGGAAAGAGGGTTATATGATATCCCTTATTCCGGATTAGGGTTAATCTTCAACATTGCGCAGAGTCATCACCAGTCAC CCCATTACAGCAATCGGTAAAAAGCTTCAAACTTTTTTCACCCCTTTACTTCCAAACGTGAAAAACCTCCAAACTTTCTT CACCATTGTGCTTTAGAACATGAATTGAATTGTCTTGTTTGGTAATGAATTCACATGTTCCTGTCACACAGACAGAGCAA AACAGCATACAACATTGGTGTTAACTGTTAAGATTCTTGTCAAGGCACAATGAGTAACCAAAATGGTTCAAGCAATGACC GGTCAAGGATGCATTGGACTCCATTGATGGAGCGTTACTTCATTGATCTAATGTTGGAGCATTTGCAGAGAGGAAACATG GTTGGCCACACTTTCAACAAGGATGCTTGGACAGACATGCTCACCATGTTCAATGCCAAGTTTGGTTCACAGTGTGATAA GGATGTCTTGAAAGCTCGTTATACTAATCTGTGGAAGCAGTTCAATGATGTCAAGAACATTCTATCTCACTTTGGTTTTT CTTGGGATGCTGTGCATCAAAGGGTTGTGGCTGATGATTTTGTTTGGGAGGATTATATCAAGGCTCACCCTGATGCACGG TGCTTTAGGACTAAACCAGTGCTTAACTTTGATGATTTGTGCATGATATATGCTCACACCTTTGCTGGTGGAAGATATAG TTTATCAAGCCATGATGTAAGCCTTGATGATCAAATGCCAGGACTGCATTTGCCCTCAGGTGAGTGTTACTTTCAGACCT TCAATGTTCCCATATAACATGCATTACAGTAGAAACTAAATTACGGTCTTGTTTGGAAGAGCTTATTTTAACTTATTTTG TAGTATAAATGCTTATGCAAGTGTTTAAATAACTCATGAGTCATGACCTCTATATAAGCTGTTTTGATCTTATTCTCATA GCTACTCAGTTTAGCTTATGCATGCTTCTCAACATACCTACAGGCTAGAACATATTTGAGCTTATTTCAATAAGCTTATC AAATTAGCTTATGAATAAGAGCTTATCCGGTAAGCACTTATTGCCATTAGTGCTTAATTATGTTGTTTACCCAATTTCAC CCATATAGTTTTCCTTAATTGACAATTGTTTTGGTGGTTATTGCAACTCATGCAATAAACTTATGGTAATGGGAGCTTAT CTTAATTATGTATTCTGCAACTTGTAGGTGATGGAACAGGAAGCTCTGCTGTATCAAGTAATGAGCTGCTCAAGACAGAT TGGACTGCTTCAATGGACCAATTTTTCGTTGAGCTTTTGCTTGATCAGTTGGGCAGGGGCAATCAAGTCAATAATTCATT CAATAAAAAGGCTTGGACAGATATGCTAGCCATGTTCAATGCTAAATTTGGATCTCAACATGGTAAAAGGATTTTAAAGA ATCGATTCAAGAAACTGCTGAAATGTTACCGTGACATGACAAAACTTCTAAAACAAGGCTTTTTGTGGAATGAACAACAG CAGATGCTTGTCGCTGATGATGATGTCTGGGATGCTTATATCAAGGTATATGCCCAAGAAGGCTGGTATGTGAGAGGGGG GGTGTGTAGAGGAGTATATACATGCTTCCTGGCGCTGACTGTCTTAAAATTCTTGTAGGCACATCCACATGCACGTACAT ATAGATTGAAAACATTGCCAAACTATCATGATTTAGAATTATTATTCAGAAATGTGTGTGGAGATGAGATCAGTAATTTG CATCAGGAGAAAAATCATGAAGCTGTCATATCCGAAACAAAGAGGGGTGAGTAGCAACTAAAAGCATTCTCTTAGCTAAT TCAAGTCATTGCGTTACTATCTTGCATTTATTTAAAGAAAATTAACAACTTGGTCCATAATGGTAATGAAAAACTCATGG AAAATCAACTGGTGCACTTGTCTGAAGTTGTAGCTGAATGCAGAAACATTGAAGAAATAGAACTTTCTAAGTTAGTTAGT CGGTAAATACTTCTTATATCTTCCAATGTCCTTCTTATTAATGTTCATGGATATTTTCTTGTATGAAAAGACTAAAAATG TGCTTGTTACTTGAGAATTTAAAATAATCAACTCTGAAGGGGAATTTGGGATCCTTTTGCTCATGCAATTGTAATTTCAT GAACATCTGCATATTATATTGCAAAATATCTTGCAGTCCAAAATCAAAAGGGTTCAAATAGGTGGACATGATAAGTTCTC ATGCACTTCAAAAATTACTATTGTGATATTTAGGTTTATTTGATACTAGGAATAAATCAACACCCTATGTTATAATTCAT ACTTGAGTCCTTGAGGTCTTGGGACAACTGAGTAGTTACCTCGATGATTGTGTATCTTTCCTAAGGTGAACAAAAACGAA GGCGGAACCCAAGTGGTACTGATCGTACTAGAACATGTTGGACACCCCCGATGGATGCTTGCCTCATTGACTTGTTATTA GAGCAGGTCAAAAGGGGAAATAGACTTGGGCAAACATTCATTACCCGGGCTTGGAATGGCATGACTGTGTCTTTCAATGA ACAATTCAAATCTCAATATGACAAAGATGTTCTGAAGAATCGTTACAAACATTTGAAGAAACAGTTCAATGAGGTGGACA ATCTTCTTCAGCAGGATGGGTTCTCATGGGATGATACAAAAGAAATGGTTAATGCAGAGGATCATGTTTGGGATGCTTAT ACAAAGGTGACATTTTTTTTTACTCTGATTAGGCTTCTTAGATGTTCTATGGTTAAGTTAACATGCAATTTCTGCAGGCA CACCCTGAAACTCGATCACTTAGAGTTAAAACCTTACCAGGATATCACAAATTGTGTGTTATATTTGGAGAGGAATGTTC TGATTCTAGACATTTCAGTTTATCACATGATGCAGATCCCAGTAACGAATTATTAGTGTTGATAACAGGTATGTTTTCTG TACAGTTACAATAATAAAGCGCTATCTTGGACATGGACTGGTAGATTGAGAAATGTTGTATGGTTGTTGTTATATTATTA CTTCTTACATTCAAAACTGTCCATTAGCTACACCTACACCTTCTTAAGAGTAGAAAGTTAATTTTACTACCGATAATTTT ATTTGGGTCCCAAGCAAGTTCTCTGTTTACCGATTTATCCCAACTTACTATAGTAACTATGAAAAAGCCAAAATTCCGTA CTACTAATATCACAAAGTTCAATGTCATTTCACAAATTACACCTAACTATTGAAGCAGCAATTGATAACCCATAGTGTCT TCTTTAACATGTATTGACGACCAAATACTCTCCCCTTCCTTGAATCTTTTTCTTTGTTCCTGGCTATATTAGATTGTTTA CAATTAGGTAGCTTTTGAAGCAAAAATAGAATGGAATGGAACTGAAAGATTTTGTTCTGTTCTTGTCGGTTCCTCCCCAT CTTGTGGAATCAAGGCATATTAATATTTTTAACCTCATCATGTTTTGTACAATTCTTAAATACCAAATATAATATAAAAT CCGTAATCTGTCCCATTCTAACGCATTGAACAAATTCACCCTTAATTTTTTCTAGAAATTTTAGCCATGCTTGACATGTA ATGTTCTACCTCCATTCCTATTTATCTTTTCAGAGTGACAAGAAAACACACAAATCAATCTCAATCAATAAATACCTTCA ATTTGTTTGAGTTATTTATAGACTTTCTATTTGACCCTTTGAGCTTTGGACTACTCATATAGTAACTCAATACTGGAGAG TTTGTTGTGTTTAAGCATTACATGGCATAAGGATATTTAATGTTTTCTTGAACTACTATATTGTCAGATAAACATGGGCA AATTTTTTCTTCTCTAACTAGACAATAAATAGGAATGGAGGTAGTATCGTGTATTGGTATTAGGGGTAATCGTATTGGGA GTCTTTTTCAGACAAGCTTTTACTTTCTGTATTCTTATGGATATTTGGTTATTTACAATTTAAAGGTGAACAGAAGAATG CCACAGGTCCCAATGTTTATGATGCTGATTCTACAATAGAATGGATGGAATCAATGGAAATCTGTTTTGTTGACCTTATG ATTGAGCAACTAAACAGAGGAAAGAGGATTGGAGAGTTTTTCAATGAGTATGCATGGACCCAGGTGACTGAAGCATTCAA CGCTAGATTGGGACTCCAATGTGATAAGCAATTTCTCGTAGATCAGTATTTCTGCTTGATGAAAAAGCATAATGACATCA GCAAAATTCTCAGTCACAGTGGATTTACATGGGATGAAACTCTACAAACGGTAACTGCTGAGAATGATACCTGGGATGCA TATATTAAGGTCTTGTTCTCTATCCAATTCTCCCTTGTTTTTGTTTGCTATCATCATTCTGCAGTTGCATGATTGCATCT GTTGTAGACTTCTTTTAGTGCTCTAACACTCTGTTCTCTTAATCAGAGGTGTTTGCTCGCTTATCTGGAATAGTTTGTGA CCACTATCTATTTCTTCACAATCTTCTGATTGCAACTTGCTGCTGAATGATATTTGCAGGATCACCCAGATGCCGTATCA TATAAAAACAGGTTTTTGTATCTTTTCAATGATTTGTGCAAGATTTTCGGAAACAAAGTGATGCAAGTACCAGATGCAGG AGAGATTGCTCAGGATCAGCACCAGTTGATCGAAGCCAACGATGTCACCGTTGAGATCGATATGGACGGAACATGTGAAG ATCTGGCTGAGATTAGCAATTTTGATATATCCGATGAGGACTTAGACTGGCCAAGGGAATTGAACATGGATGGATCACCT GAAAATTTGGTTGAGAGTGGCAGCCCTAAAATTTCATTCCAAGATAAGAAAAAGCCAAGTGTGAACAATATGTTTGGAAT GTCTGGAATTTTGGATGGGACTATTAAAAATGAAATATCAAACCTAGATACAGAAAGACCTAAGGAAATGGGAATGGATA TAACAACATCTGGTGATTTTGCTGTGATTGGGAACACTCAAATAACATCTCAAGATAAGAAAAGGCCAAGCATAAACGGA ACAAGTGGTGATTTGGTGATGAGTGGCAACACAACAATAACACCTTGTGTTAAGAAAAGGCCTAGTTTAATGCCATCAGA ATCCAGGCCTGCCAAAAAGGAGCTGAGAATCAAAGAAGCTTTGTCTAAGATGGCAAGTGCTGTGAAGGCACTGGTGAATA AGAAAGAAAAGAACAACAACAAATCGTTTGAAAATGCATTGAGTGCACTTCAAGCTATGCCAGACATAGATGATGAGCTT GTAATGGAGGCGTGTGATCTTTTGGAAGATGAGAGAAAGACCGAGATATTTTTAGCTTTGAATGTCTCGTTGAGAAAGAA GTGGTTGCTCAGAAAGCTTCGGTGGTAACAGCCGCATGTCTTCCCTGTATAGTATTGTATATTAAAGCTTAGCCTGAGCA TGTTTGGAAAATTAACTGCAGCCTGTGAACATGTAGAATCGATTTAAGTTTTGAAAAACTACTCTTTGTAGCTTATAGAT ATAGAATAGATTCTGAGTTTGGAAAGTGAAATCCAAACATGCACTGTGTTTTGGTTTTTGTCATTTAACTTTCTGTTACA ATTCTTGAACTAAATTGAACTTTTCATTGTCCAGATTATCCTTCTTCTTCTCTAGCAAAATCACAGACATAATCCATAGT GAACTGCCTGTGTACAGTAACAGAAAGCCCGAGTTACTGCACCTTCTTAATTATTCTCTTGGCTTATAAAAAAAACCTTC TTAATTATTC 

CDS sequence (LotjaGi1g1v0376300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCTTGCCTCATTGACTTGTTATTAGAGCAGGTCAAAAGGGGAAATAGACTTGGGCAAACATTCATTACCCGGGC TTGGAATGGCATGACTGTGTCTTTCAATGAACAATTCAAATCTCAATATGACAAAGATGTTCTGAAGAATCGTTACAAAC ATTTGAAGAAACAGTTCAATGAGGTGGACAATCTTCTTCAGCAGGATGGGTTCTCATGGGATGATACAAAAGAAATGGTT AATGCAGAGGATCATGTTTGGGATGCTTATACAAAGGCACACCCTGAAACTCGATCACTTAGAGTTAAAACCTTACCAGG ATATCACAAATTGTGTGTTATATTTGGAGAGGAATGTTCTGATTCTAGACATTTCAGTTTATCACATGATGCAGATCCCA GTAACGAATTATTAGTGTTGATAACAGGTGAACAGAAGAATGCCACAGGTCCCAATGTTTATGATGCTGATTCTACAATA GAATGGATGGAATCAATGGAAATCTGTTTTGTTGACCTTATGATTGAGCAACTAAACAGAGGAAAGAGGATTGGAGAGTT TTTCAATGAGTATGCATGGACCCAGGTGACTGAAGCATTCAACGCTAGATTGGGACTCCAATGTGATAAGCAATTTCTCG TAGATCAGTATTTCTGCTTGATGAAAAAGCATAATGACATCAGCAAAATTCTCAGTCACAGTGGATTTACATGGGATGAA ACTCTACAAACGGTAACTGCTGAGAATGATACCTGGGATGCATATATTAAGGATCACCCAGATGCCGTATCATATAAAAA CAGGTTTTTGTATCTTTTCAATGATTTGTGCAAGATTTTCGGAAACAAAGTGATGCAAGTACCAGATGCAGGAGAGATTG CTCAGGATCAGCACCAGTTGATCGAAGCCAACGATGTCACCGTTGAGATCGATATGGACGGAACATGTGAAGATCTGGCT GAGATTAGCAATTTTGATATATCCGATGAGGACTTAGACTGGCCAAGGGAATTGAACATGGATGGATCACCTGAAAATTT GGTTGAGAGTGGCAGCCCTAAAATTTCATTCCAAGATAAGAAAAAGCCAAGTGTGAACAATATGTTTGGAATGTCTGGAA TTTTGGATGGGACTATTAAAAATGAAATATCAAACCTAGATACAGAAAGACCTAAGGAAATGGGAATGGATATAACAACA TCTGGTGATTTTGCTGTGATTGGGAACACTCAAATAACATCTCAAGATAAGAAAAGGCCAAGCATAAACGGAACAAGTGG TGATTTGGTGATGAGTGGCAACACAACAATAACACCTTGTGTTAAGAAAAGGCCTAGTTTAATGCCATCAGAATCCAGGC CTGCCAAAAAGGAGCTGAGAATCAAAGAAGCTTTGTCTAAGATGGCAAGTGCTGTGAAGGCACTGGTGAATAAGAAAGAA AAGAACAACAACAAATCGTTTGAAAATGCATTGAGTGCACTTCAAGCTATGCCAGACATAGATGATGAGCTTGTAATGGA GGCGTGTGATCTTTTGGAAGATGAGAGAAAGACCGAGATATTTTTAGCTTTGAATGTCTCGTTGAGAAAGAAGTGGTTGC TCAGAAAGCTTCGGTGGTAA 

Protein sequence (LotjaGi1g1v0376300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDACLIDLLLEQVKRGNRLGQTFITRAWNGMTVSFNEQFKSQYDKDVLKNRYKHLKKQFNEVDNLLQQDGFSWDDTKEMV NAEDHVWDAYTKAHPETRSLRVKTLPGYHKLCVIFGEECSDSRHFSLSHDADPSNELLVLITGEQKNATGPNVYDADSTI EWMESMEICFVDLMIEQLNRGKRIGEFFNEYAWTQVTEAFNARLGLQCDKQFLVDQYFCLMKKHNDISKILSHSGFTWDE TLQTVTAENDTWDAYIKDHPDAVSYKNRFLYLFNDLCKIFGNKVMQVPDAGEIAQDQHQLIEANDVTVEIDMDGTCEDLA EISNFDISDEDLDWPRELNMDGSPENLVESGSPKISFQDKKKPSVNNMFGMSGILDGTIKNEISNLDTERPKEMGMDITT SGDFAVIGNTQITSQDKKRPSINGTSGDLVMSGNTTITPCVKKRPSLMPSESRPAKKELRIKEALSKMASAVKALVNKKE KNNNKSFENALSALQAMPDIDDELVMEACDLLEDERKTEIFLALNVSLRKKWLLRKLRW 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 135 135 8.7E-133
PANTHER 1 135 135 8.7E-133
Pfam 1 90 90 2.2E-29
Coils 45 65 21 -
PANTHER 157 538 382 8.7E-133
PANTHER 157 538 382 8.7E-133
Pfam 161 255 95 2.5E-22
MobiDBLite 414 435 22 -
Coils 477 497 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0376300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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