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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384000 |
| Transcript ID | LotjaGi1g1v0384000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT3G15730.1 phospholipase D alpha 1; Swiss-Prot: sp|P86387|PLDA1_CARPA Phospholipase D alpha 1; TrEMBL-Plants: tr|G7JB30|G7JB30_MEDTR Phospholipase D; Found in the gene: LotjaGi1g1v0384000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86745163..86750122) extracted from Lotus japonicus Gifu genome v1.2.
GACGCTACACATTAATCCTAGCAAGCAATGGTAACTTGGGTTATGGACAAGCCACATATCTTTGCAAAACAGGCTCCTAG TCCATTCCAAGTAAGCAAGTGCTCCCTTCAAGCCAAGGAGAAGGAGGGAATCAAATCTAGTTATTGTTCTCCCAAGACAC TTCTCTTTCTTCAAACTAAATACTCCTAGATTCCCTCTCCATGTCTCTTTATACATAACTATCAGCTTGAATGTAACCTT TAATTGTTTCCATGCATTTACATTTCCAGAGAAGAAAAAATTCCCATTTTTATCAGCCATCTCCATTAGTCTTTTACATT TTGTGAAAATTGGAATATTATTTGTTATGATACTGATCATAGCATAGGATGCAGGGGAGAAGTATATATAAAATGCAACA CAACAAAATGCCTCAGCTGCTACATGGGAAGCTTAAGGTAACCATATTTGAAGTTGATAGGCTGCAAGCTGGATGTAATT TGGAATTCTTGCGGAAGGTATCTCCATTAAATCTCTCTCTTGTTCAATCAATCATTAAGGGAAAAAAGGAGCAAAAGAAA CTTTTAATGATGAAATGGAATGATGTGCTTGACACATTACTAAAGGAGTTAAAGATGATTTTCAAATTAGGATATATGTT TGAAAATGATGATTCTGTAATTATCTGAATATCAAATTTTAGTCCCCTTTAGTTTCTCAACTTTTTAATTATTGCACATC AAGTCACTCTATCATTACTATTACTATTCTATTCAAAATCATTACAATCTTGTTTTTTAAGAAAAATATTCTCACATTGA ATAAGAGGGTGACCGGTACCAGATGTTTATACGAAAAAATATAACCATTGTATACCTTATTCATATCAAAACTCACTAAT CAAAACATTAATTAAAAAAAACCTCGATTTCACACCTCTTTAAATCATAATGCCATATACTAAAAAATCCTTCAAAATTT TAATAACATTTCACTAAATTTTAACTTTTAAATTTTAAAACTACATCATACATCATATCCATCATAACTCTAAATTATTT GGAAATAAAATGAGCACTTAATGATTTTATGCATGTGCAAATTGAGAGAGACCAAATTTGCTTAATTTTTTTCTTTCAAG TTTTTCTTTGCTTAATTTTAGAAAATAAAGAGAATTGATTAGCTCAAAAAAATGTACAAGACCAAATTCACACGGTCTAA ACTAAAAGGACCAAAAATTAAATTAAGCCATAAATATATAATGAAAGAATATACTCGTATTTGACTTTATAATTGCTTTA CCTATGGGTTAATTATTTGTGTGATTTCAAAGTTAGTCATTATATTACTTAGAAAAACCACTCTTCAAGTAAACTTATCC AAAAATATATACTTTCATAAAAATCCAACTTATTTCACATTATTTCTTTGCAACATTGCATGTGTGGATATTAGATACAC AATAGAAAAACACGGAGAGTCAAAATCATGGTAGATAGAAGCAACTTCTTTTAGCTTTTGTTGTTGTTTACCATAATTTT TAGTTTACCTTATTTTAGTTTTTCATTGTGTATCCAAATATGCACTCAAATGCTTTATTGCATCCCTTACGTTTTAATTT GAAGAGAAATTAACGCTCTTTTCAATCTGCCTTTTCATTTTCTTCTATTTTTTTTTTTTTGAGTAAAGGGCACAACACAA AAGGGGAAGAGACTTCTAGCCCAAGTTAAGGGTTGTCTGCTGTGCCGACCTGAGGTATGTTAACTAACTTTTCCACCTTT CTGCACTTCAATTTTTTTCACTTTTGCAGGAAACATGCTTCATTTTCTATACATAAACATATGTGAAAAAAAAATTCTTA TTAGTCATAACATGTACAAACTTCATGAAGATTGTTGGTACAAGACTATATGCAACAGTGGATTTAGACAAAGCAAGGGT TAGAAGGACCAGAATGATAGGAAACCAACCCTCCAACCCCAAGTGGAAGGAGAGCTTTGAAATATATTGTGCTCATCATA TCTCAAACATTATATTCACTGTAAAAGATGATAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTACATCCCTGTTGAG CAAGTCATCAAGACCCCTATAATTAACAGATGGGTTGAGATACTAGATGAAGAAGATCATCGCCCTGTCCCTGGTGGCTC CAAAATTCGTGTCAGTGTGCAATTCTCTAGTGTCACCGAGGACAATGCATGTCTATGGTCCCAAGGAATACATGTGCCAT TTTCAGGTGTTCCTCGTACATTTTTCAACCAAAGACAAGGTTGCAGTCTCACTTTGTACCAAGATGCCCATGTCCCTGAT GGTTCCACCCCATGGATTCCTATATCAGGAACAAAATATTACGTGCCTGCAAGATGTTGGGAGGACATTTACAGTGCAAT CATGGATGCTAAGCACTTTATTTACATAGCAGGGTGGTCAGTTTACACTGAAATAAACTTGGTTAGAGACCCAAAGAATT TAGGTTCAGAAAGCGTCATCACCCTTGGGGAACTTCTCAAAATGAAAGCTGATGGTGGTGTTAATGTTCTCATGCTTGTT TGGGATGACAGAACCTCTGTTCCAGATTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAGGAAACTGCACAGTACTT TAGGAACACAAAGGTTCATTGTGTGTTGTGCCCACGTAACCCAGATAATGGAAGAAGCATTGTTCAAGGTCTTCAAATCT CAACAATGTTCACTCATCACCAAAAGACTATAGTTCTTGACAGTCAAGTTACAGGATTAGAGAAGCGAAGTGTGACAAGT TTTATAGGTGGACTTGATCTTTGTGATGGGAGATATGATACCCGTGAACATCCTTTGTTCTCAACTCTGAACACAGTCCA TCATGCTGATTTCCATCAACCAAATTTCCCAGGAGCTTCCATTAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTC ATTGCAAGCTGGAAGGGCCTATTGCATGGGATGTGTTGTTCAATTTTGAGCAAAGGTGGGAAAAGCAAGTGGGGAAGCAA TTCTTGATGTCAATTGATGAGCTTGATCGATTTCTGGTGCATCCATCTGATGCAATGGTATCAGAAGAGGATAAGGACAC ATGGAGTGTTCAGTTGTTCAGATCCATTGATGGGGGTGCTGTTTCTAGCTTCCCCCAAGCCCCAGATGAAGTTGCTGAAT TCGGCCTCATTAGTGGCAAGGATAATGTCATTGACAGAAGCATTCAGGATGCATACATAAATGCTATTCGACGAGCAAAG AAATTCATCTACATTGAAAATCAATATTTCCTAGGGAGTTCATATGGTTGGAAAAGTTCTGATATCAAAGTTGAGGATAT CAATGCTTTGCATCTGATACCAAAGGAGTTGTCATTGAAGATTGTGAGCAAGATTGAAGCAGGGGAAAGGTTTGTTGTGT ATGTAGTGATCCCAATGTGGCCAGAAGGTATGCCTGAAAGTGCTTCAGTTCAGGCAATACTAGATTGGCAAAGGAGGACC ATGGAGATGATGTATTCTGACATTGCTGATGCCATCAAGAAGAAGAATATTGAAGCACACCCCAGAGATTATTTGACATT CTTTTGCCTTGGCAAGAGGGAGAGTAAGATAGAAGGAGAATACACTCCTCCAGAGGAACCAGAGCCTGACAGTGACTACC GAAGAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGGTAAGAGATCATTACTTCTATAA ATCATATGTTCTTGCTCGTACAAATTAAGTGTATTTAATTTCATGCAAATTAGGGATATGTAGTTTCCTAGTTTTGATTA AATATAAGCACACATGTGAGTCCAAAACCCATAAGTTAGTACACATTATTTATAAGCACACATGTGAGTCCAAAACCCAT AAATTAGTATTTTCACTTTCTTGTTAAGGGAATGTAAGCAAGATTACTCAAAGAGATAATCAAACACACTCTTAGACATA AATTTAGCTAAAAAAAGTTAGTCCTATGTTAATTATACACATGGCTAATGTAATTCTCATAAAAAGTATAAGAATCCTAA TATTTAAACTAAATTTAGGGTAAATTTGTACCTGAATTCTAAAATAGTATCAAAGTTTATTCTAATCCTACCGAAGAGTG TCTTGAAGCTCTGCATTGACAAAAATAATAATTTAGAGGTAGACTAATTTATGAGTTCTAACATAAGTTAATCAAAATAA ACTCAAAATAATTTTCACTTATATCGCTAATGTCAAGTTGAGCATTAATTGAACCCTAACATTGGTGAATTGCTTTGTTG TTTCAGTGGATGATGAATACATCATCATCGGTTCCGCCAACATCAACCAAAGATCAATGGATGGTGGAAGAGATACAGAG ATAGCAATGGGAGCATTCCAACCGCATCATCTAGCATCAAACGGTCCACAAAGGCCACAAGGCCAGATTTACGGGTTTCG GCGAGCATTGTGGTACGAGCATATTGGGTATGCTCACGATGTGTTCGACGAGCCTGAGAGTGAGGAATGTGTGAAACTAG TGAATCGCATTGCTGAGACGAATTGGGAATTATACACGAAGGACACGGTTGATGAAAGTGTAGCATCGGTTCACATTTTA CGATATCCTGTAGAAATTGCTGAAGATGGAACCATAACGACACCGCCAGGACATGAATTTTTTCCTGACACCAAGGCTCG TATTCTTGGTGCAAAATCTGATTACCTTCCTCCAATTCTTACAACTTAACTAACACATTGTGAATATAAACTCGAAATTA TGTGATGGCCAAAAATAAAAATAAAAATAAACTTGAAATTCTGCTCTATTCGTAATGAATACTCTTACTATATTTTCTCT TTCAAAAAGAAAACTCTTACTATATTTTGAAGACTAATTCTCTTGATATCGTTTTACTTGCTAAATATAAAGAATATAAT
CDS sequence (LotjaGi1g1v0384000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGGGAGAAGTATATATAAAATGCAACACAACAAAATGCCTCAGCTGCTACATGGGAAGCTTAAGGTAACCATATT TGAAGTTGATAGGCTGCAAGCTGGATGTAATTTGGAATTCTTGCGGAAGGGCACAACACAAAAGGGGAAGAGACTTCTAG CCCAAGTTAAGGGTTGTCTGCTGTGCCGACCTGAGATTGTTGGTACAAGACTATATGCAACAGTGGATTTAGACAAAGCA AGGGTTAGAAGGACCAGAATGATAGGAAACCAACCCTCCAACCCCAAGTGGAAGGAGAGCTTTGAAATATATTGTGCTCA TCATATCTCAAACATTATATTCACTGTAAAAGATGATAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTACATCCCTG TTGAGCAAGTCATCAAGACCCCTATAATTAACAGATGGGTTGAGATACTAGATGAAGAAGATCATCGCCCTGTCCCTGGT GGCTCCAAAATTCGTGTCAGTGTGCAATTCTCTAGTGTCACCGAGGACAATGCATGTCTATGGTCCCAAGGAATACATGT GCCATTTTCAGGTGTTCCTCGTACATTTTTCAACCAAAGACAAGGTTGCAGTCTCACTTTGTACCAAGATGCCCATGTCC CTGATGGTTCCACCCCATGGATTCCTATATCAGGAACAAAATATTACGTGCCTGCAAGATGTTGGGAGGACATTTACAGT GCAATCATGGATGCTAAGCACTTTATTTACATAGCAGGGTGGTCAGTTTACACTGAAATAAACTTGGTTAGAGACCCAAA GAATTTAGGTTCAGAAAGCGTCATCACCCTTGGGGAACTTCTCAAAATGAAAGCTGATGGTGGTGTTAATGTTCTCATGC TTGTTTGGGATGACAGAACCTCTGTTCCAGATTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAGGAAACTGCACAG TACTTTAGGAACACAAAGGTTCATTGTGTGTTGTGCCCACGTAACCCAGATAATGGAAGAAGCATTGTTCAAGGTCTTCA AATCTCAACAATGTTCACTCATCACCAAAAGACTATAGTTCTTGACAGTCAAGTTACAGGATTAGAGAAGCGAAGTGTGA CAAGTTTTATAGGTGGACTTGATCTTTGTGATGGGAGATATGATACCCGTGAACATCCTTTGTTCTCAACTCTGAACACA GTCCATCATGCTGATTTCCATCAACCAAATTTCCCAGGAGCTTCCATTAAGAAAGGTGGTCCAAGAGAGCCATGGCATGA CATTCATTGCAAGCTGGAAGGGCCTATTGCATGGGATGTGTTGTTCAATTTTGAGCAAAGGTGGGAAAAGCAAGTGGGGA AGCAATTCTTGATGTCAATTGATGAGCTTGATCGATTTCTGGTGCATCCATCTGATGCAATGGTATCAGAAGAGGATAAG GACACATGGAGTGTTCAGTTGTTCAGATCCATTGATGGGGGTGCTGTTTCTAGCTTCCCCCAAGCCCCAGATGAAGTTGC TGAATTCGGCCTCATTAGTGGCAAGGATAATGTCATTGACAGAAGCATTCAGGATGCATACATAAATGCTATTCGACGAG CAAAGAAATTCATCTACATTGAAAATCAATATTTCCTAGGGAGTTCATATGGTTGGAAAAGTTCTGATATCAAAGTTGAG GATATCAATGCTTTGCATCTGATACCAAAGGAGTTGTCATTGAAGATTGTGAGCAAGATTGAAGCAGGGGAAAGGTTTGT TGTGTATGTAGTGATCCCAATGTGGCCAGAAGGTATGCCTGAAAGTGCTTCAGTTCAGGCAATACTAGATTGGCAAAGGA GGACCATGGAGATGATGTATTCTGACATTGCTGATGCCATCAAGAAGAAGAATATTGAAGCACACCCCAGAGATTATTTG ACATTCTTTTGCCTTGGCAAGAGGGAGAGTAAGATAGAAGGAGAATACACTCCTCCAGAGGAACCAGAGCCTGACAGTGA CTACCGAAGAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATCA TCATCGGTTCCGCCAACATCAACCAAAGATCAATGGATGGTGGAAGAGATACAGAGATAGCAATGGGAGCATTCCAACCG CATCATCTAGCATCAAACGGTCCACAAAGGCCACAAGGCCAGATTTACGGGTTTCGGCGAGCATTGTGGTACGAGCATAT TGGGTATGCTCACGATGTGTTCGACGAGCCTGAGAGTGAGGAATGTGTGAAACTAGTGAATCGCATTGCTGAGACGAATT GGGAATTATACACGAAGGACACGGTTGATGAAAGTGTAGCATCGGTTCACATTTTACGATATCCTGTAGAAATTGCTGAA GATGGAACCATAACGACACCGCCAGGACATGAATTTTTTCCTGACACCAAGGCTCGTATTCTTGGTGCAAAATCTGATTA CCTTCCTCCAATTCTTACAACTTAA
Protein sequence (LotjaGi1g1v0384000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGRSIYKMQHNKMPQLLHGKLKVTIFEVDRLQAGCNLEFLRKGTTQKGKRLLAQVKGCLLCRPEIVGTRLYATVDLDKA RVRRTRMIGNQPSNPKWKESFEIYCAHHISNIIFTVKDDNPIGATLIGRAYIPVEQVIKTPIINRWVEILDEEDHRPVPG GSKIRVSVQFSSVTEDNACLWSQGIHVPFSGVPRTFFNQRQGCSLTLYQDAHVPDGSTPWIPISGTKYYVPARCWEDIYS AIMDAKHFIYIAGWSVYTEINLVRDPKNLGSESVITLGELLKMKADGGVNVLMLVWDDRTSVPDFKKDGLMATHDQETAQ YFRNTKVHCVLCPRNPDNGRSIVQGLQISTMFTHHQKTIVLDSQVTGLEKRSVTSFIGGLDLCDGRYDTREHPLFSTLNT VHHADFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLFNFEQRWEKQVGKQFLMSIDELDRFLVHPSDAMVSEEDK DTWSVQLFRSIDGGAVSSFPQAPDEVAEFGLISGKDNVIDRSIQDAYINAIRRAKKFIYIENQYFLGSSYGWKSSDIKVE DINALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGMPESASVQAILDWQRRTMEMMYSDIADAIKKKNIEAHPRDYL TFFCLGKRESKIEGEYTPPEEPEPDSDYRRAQNARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQP HHLASNGPQRPQGQIYGFRRALWYEHIGYAHDVFDEPESEECVKLVNRIAETNWELYTKDTVDESVASVHILRYPVEIAE DGTITTPPGHEFFPDTKARILGAKSDYLPPILTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 7 | 834 | 828 | 0.0 | ||
| PANTHER | 14 | 834 | 821 | 0.0 | ||
| CDD | 14 | 170 | 157 | 7.5634E-56 | – | |
| PANTHER | 14 | 834 | 821 | 0.0 | – | |
| SUPERFAMILY | 16 | 172 | 157 | 4.99E-17 | – | |
| SMART | 21 | 146 | 126 | 9.6E-12 | ||
| Pfam | 21 | 148 | 128 | 9.0E-14 | ||
| Gene3D | 62 | 182 | 121 | 3.9E-12 | ||
| SUPERFAMILY | 189 | 458 | 270 | 1.48E-29 | – | |
| ProSiteProfiles | 350 | 386 | 37 | 10.457 | ||
| Pfam | 350 | 386 | 37 | 5.5E-8 | ||
| SMART | 350 | 386 | 37 | 0.26 | ||
| Gene3D | 488 | 724 | 237 | 4.1E-22 | – | |
| SUPERFAMILY | 523 | 762 | 240 | 2.94E-28 | – | |
| ProSiteProfiles | 677 | 704 | 28 | 15.45 | ||
| SMART | 677 | 704 | 28 | 1.9E-8 | ||
| Pfam | 678 | 704 | 27 | 1.8E-7 | ||
| Pfam | 752 | 824 | 73 | 1.5E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi1g1v0384000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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