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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0423300 |
| Transcript ID | LotjaGi1g1v0423300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-galactosidase; TAIR: AT4G36360.1 beta-galactosidase 3; Swiss-Prot: sp|Q9SCV9|BGAL3_ARATH Beta-galactosidase 3; TrEMBL-Plants: tr|A0A151TC90|A0A151TC90_CAJCA Beta-galactosidase; Found in the gene: LotjaGi1g1v0423300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91751288..91756773) extracted from Lotus japonicus Gifu genome v1.2.
CGGAAACTGACACAAACAATTAATAAAGTAGGTACTAGACAGCAAAAAAGGATCATGTGTTAAAGTGGGAGAAGAGCACT GAGCAACATCATTAGCATTACCATGGTATAAGGGTTCATATGTGGATGCGGAACTGGAAGAAGTAACACAGATAACAGTA CTAGCAGCACAATGGTAGCTGCTGAACAGTGTTTCAGATCATAGTCAACAACAGAAAGACAATTTCTGCATTGTTCTTCT CCCTCCATTCAAAGAAACATGGACACCAATTCAGTTTCAAAGCTGCTACTAGTGTTGTTACTCACGGTCTTGTTTGCGGG TTTTGAGCTGATTCACTGCAATGTGAGCTATGATAGGAAGGCCCTTCTCATCAATGGCCAAAGGAGAGTCCTAATCTCTG GTTCCATTCACTATCCCAGAAGCACCCCTGAGGTATGGTTAACTTTTTCTTCACTCCCCTTAAGTTTGTGTTTTCAGCTT CTAATTGAGTGTGTTAGTTTCAATTGTGTGATTTCTGTAACATGTAGATGTGGGAGGATCTAATTCAGAAAGCCAAACAT GGAGGAATTGATGTCATAGACACTTATGTCTTCTGGGATGTCCATGAACCCTCACCTGGCAATGTACTACTCTGGATCTT ATAAAAATTGCATTTTTTTAGGGTTGCTTTGTTATTTTTTCTGATGTTACTATGTTAGTTTGCAGTACAATTTTGAAGGA AGATATGATCTAGTTAGGTTCATTAAGACAGTGCAAAAGTTGGGGCTTTATGCCAATCTTCGCATTGGACCTTATGTATG CGCTGAGTGGAATTTCGGGTACGAACACCTTCCATATTTCTATGTGTTTTTTGTGTATGGGATTATTGTGATTCACAATT ATATTCTTTAATGGTGTAGAGGGATTCCCGTTTGGTTGAAGTATGTTCCTGGCATAAGCTTCAGAACAGATAATGGGCCT TTCAAGGTTGAACTTTAATTTCAAATTAACATGGTTTATCTCTGTTGATGAATCTAGTATTGCATGCTCTGATGTTGCTG TTTTGTTTTTATTTAGGATGCAATGCAGGGTTTTACCAAGAAAATTGTCCAGATGATGAAGAGTGAAAAGTTGTTTCAGT CTCAGGGTGGTCCAATCATTCTTTCACAGGTATGCAGTCCCTTTGTATATATGGCATATTCATACCAATAAGTTACTATT TCAAGATGAAAATTTAAATATTTTATTTTCTCTTCCTCTACTTGCTTTTTACAGATTGAGAATGAGTATGGACCGGAGAG TGGGGCGCTAGGAGGTGCTGGTCACGCGTACATAAATTGGGCTGCTAAGATGGCTGTTGGATTGGATACAGGAGTCCCCT GGGTTATGTGCAAGGAAACTGATGCCCCAGATCCTGTGGTGAGCCTTTTCATTCTCTTGGTTAAATCATTTTCTTCAGTT GATCATGAATAGGTTTTATTTGGTCTGAAGCCCTTTCATCAGTATCACCGAAGAAATTAGGTCTTTCTTTATGTTCACCT ACATTCTATTTTTATTGAGGTTTGAGTATGATGCATTCAATTCTCTGCATCAGATAAATTCGTGTAATGGCTTTTACTGT GATGATTTCTCTCCAAATAAACCATACAAGCCTAGCATATGGACTGAGTCCTGGAGTGGCTGGTAAGCCATACATTGTAT TATATTTGAAGTTGGTTCTGTAACTCTAGAGTCTAGAGACACTGTTGTCTAATTTCCTTACCCTTATGTTCTCCTGGTCT CTTTTTTCCATTCCCCATGATCATAAGGTTTACAGAATTTGGTGGCCCAGTTCACCAGCGACCAGTTGAGGATCTAGCAT TTGCAGTTGCTCGATTCATACAAAAGGGAGGAACTTTTGTGAATTATTACATGGTGGGTCACCTTCTATGATTTATCTTT CAGTTTTACTCTAAATAACCTCATCTAGTGGTATAAAGCTAGGTTGTTCTTGTTGTTGTGACAAAACTTTCCTTGCTTTG CTTTTCAATCTCACTTGTGTGATTGATGACAAATGATAGTATCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGCCC ATTCATCACTGCAAGCTATGACTATGATGCTCCAATTGATGAATATGGTGAGACAGTCGTGCTTATAATGAGAAGATTCT TTGATTATTTTGTTTGCTCCATGATTCATTTAACATATAACTGAATAGTATATAGATATAATTTACTGAGCCTATGAATG TATCACCATTCTGTTATAATATACACATGACCCTCAAGTAAAATTGATTGTTTGTGTTTTGGTATTTCCTTCTCTGATAC ATGGCATATGCATGACTTCGTACTGGACTTTGTTTCCATCTGTGTGGCTTCAAAGATAGTTTGATGTTATATTCTGTACC ATTTCTATTCCATCCTGACCCACATGAGCATGTTGAAATTGAGCACTTCTCTGTTTTTAGGTTTGATTAGGCAACCAAAA TATAGTCATTTGAAGGATCTTCACGAAGCTATCAAGCGATGTGAGCATGCGTTGGTTTCTTCAGACCCTACTATTACATC ATTAGGAACATTTCAGCAGGTAACTCGTCTCTCATATGAAGCAATTTTCCAATTCTAGTTATGTGCATGTTTATGATAAA CTAGTCTTAGTTCTGACAATTACCCTCCTCTCTCTGTATGCTCGGCGATTTTCCAGGCTCATGTATTCTCGTCAAAAACT GGAGGTTGTGCAGCATTTCTTGCAAACTATCACGCACAGTCTGCTGCAAGAGTGACGTTCTATAACAGGAAATATGACTT GCCTCCTTGGTCCATAAGCATCCTTCCTGACTGCAAAGCGGATGTTTTTAATACTGCAAAAGTAAGAATATTTCAGGGGA CCTTTTATACGATGTCAATCACATGCGATGGAAACTACCTTTTGTCATCAGTTTTTATTTCTTATCAGCATTGTCCATTG CATCAAGTAATTGATGGGATTGCTATGTCTTCTTGAAGGTGAGAGTTCGAACTTCAAAGGTTCAAATGATTCCTGTCAAT TTGAAGTTGTTCTCATGGGAGACCTATGATGAAGATCTCTCTTCTCTGGCTGAAAGTTCAAGGATTACAGCTCCTGGACT CTTAGAACAGCTGAATGTTACCAGGGACTCCAGTGACTATCTTTGGTACATAACAAGGTAAGTTGCGCGGTATTAAGCTT ATTTTCTAGAGTTTCAAACAACTATAACTGAACTAAAATTCTTTTGGTTTGTCTGTATAATTGCAAAGTCACAAAACAAT AAATCCCCTATCATAATAGTATGCAGATTCAGTGAGATGAAATTACCTTGTTTTAGTTTTCAAGAAGTTCCTGAACAAGT GAACATGTCCATTTGTGACACATCTTTCAGATTTGAATTCTTTGTCAGATAGATTCTGCTATCCTACTTCCTCAGTTCTT AGTATCTAAAATCTTACTGTTTTATTGTTGGTATTCTGCAGTGTTGACATAAGTTCATCAGAATCGTTTCTTGGAGGAGG ACACCAACCAAGCATTAATGTGCAGTCCGCAGGACATGGTATCCACGTGTTTGTTAATGGACAGTATTCAGGTTTGTAGA ATTCAGTTAGACATGGTAGTTCTTTTGCTTGCATATTGATTGATTTCTAGTTAAACAAAGATGAAAATTCTCTTTCACAG GGTCGGCTTTTGGGGCAAAGGAACAAAGAAGTTGCAAGTTTAATGGGCCAGTCAGCCTACATGCTGGAACAAATAAAATT GCACTTCTCAGCGTTACAGTTGGATTACAGGTTCGTACTTAGTACCTTGAACTTGATCATTCGGTTGCATTGATTCAAGT GTTTCAATTTGCACGACAAGATGTTACTATCACTGATCGGCTTTGCTCTTTCATTTTTCCATTTTGCACTCGAAGAATGT TGGCCGGCATTATGAAACATGGAAGACAGGAATCAGTGGTCCAGTTTTGCTCCAGGGTCTTGACCACGGACAGAAAGATT TGACGAGTAATAGATGGTCATATCAGGTCCGATGCACCCAGAAAAGCAACACAAATTTAGTTTATGTATTCATAAGCTTC AATTATTGTGTGGCTTACAATATGTTCTCCAACAGGTTGGCCTAAAAGGAGAGGCTATGAATTTGGTGTCTCCCAATGGG GCTTCATCTGTTGATTGGATCCAAGAGTCACTAGCCACCCAAAGCCGGTCACAATTGAAATGGCACAAGGTAAGAAAAAT TACTGGCTGATGACAATATTTGCTGTAGTCTTCAACTAGAAGCTTACCATGAACATCAAACCTCCAGGCTTATTTTAACA CCCCCGAGGGAAATGAACCGTTGGCATTGGACCTGGGAAGTATGGGGAAGGGTCAAGTGTGGATCAATGGACAGAGCATA GGAAGATATTGGCTGGCTTATGCAAAGGGTGACTGTAATTCTTGCAGCTATTCTGGGACATTCCGGCCAGTAAAGTGCCA ACTTGGATGTGGACAACCTACTCAACGATGGTACAGTTTCTCTGTAGAAAATATAGCTTCAACCTTGCTTCTTTATGTCT TTAGGAAAATGTTGAGATCACTGTCATGTTATCTTGTATATATATATATTCCTTTGGTTGTGTTGGTATTGTTACTCTCT TGGTATACATGAGTAATGAACTAATGATAGTTGTCCTTTTTTGGTACAATGTGTCAGATGCAATGCCACTAGATCTATAT CTTCATCTATATGAGAGTCCAATGGTGGGAGAATAGACTGATTTACCTGTTTTCTCTTTGCAATTTCGCAGGTATCACGT TCCAAGGTCCTGGCTAAAGCCAACAAAGAACTTGATAGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGGAAGATATCTT TAGTAAAGAGAATGGTACATACTGCAAGAGTTCACAGTGAACCTGATTCAGAGAACTAAAGAACCTGAATAAGAAATTGT ATTCAATGACCCCACTTGTGAACTCTTTGGCTTTCATTGGCATTGCTTGAAACAACGGTAGCTCAGGAGCAATAAGTTCA TCATAACTTAGCAATAAATCAGCTTCAGCTTGTATATGGAGGCTTGGTTTTCAGGGTTAGGTGTGTTTATCCCAAATTCT GTGGTCTCTCCCTCTTATTAATGGACCATCTTGATTTATACAAAAGATGGGGCCAAGAAGAATTGTAATTTTATTCTTTT CAACATGTAACTGGATCTACTACTTGAAAGAGTGAAATTTACAATCTTAAGATGGTGTCTTCACTCATTTATTTCTCATT TGTCTATGGTTACCATTAGGAAGCTGTTACTGAGAAATCCACCCTTGGTCTGTTTGGATGCAGAGTTGAAAATGAGAGGA AGGAATATAAGAGGAAAGAGTATACGAGAAAAGAATATAAGTGGAAAGTGGAGTAATTTTGAAGTTGTTTGGAGTGAGGA AAAAAGAAGGGAGAATGAAAGGAAAAGTAAGAATAATAAAAATAAG
CDS sequence (LotjaGi1g1v0423300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACCAATTCAGTTTCAAAGCTGCTACTAGTGTTGTTACTCACGGTCTTGTTTGCGGGTTTTGAGCTGATTCACTG CAATGTGAGCTATGATAGGAAGGCCCTTCTCATCAATGGCCAAAGGAGAGTCCTAATCTCTGGTTCCATTCACTATCCCA GAAGCACCCCTGAGATGTGGGAGGATCTAATTCAGAAAGCCAAACATGGAGGAATTGATGTCATAGACACTTATGTCTTC TGGGATGTCCATGAACCCTCACCTGGCAATTACAATTTTGAAGGAAGATATGATCTAGTTAGGTTCATTAAGACAGTGCA AAAGTTGGGGCTTTATGCCAATCTTCGCATTGGACCTTATGTATGCGCTGAGTGGAATTTCGGAGGGATTCCCGTTTGGT TGAAGTATGTTCCTGGCATAAGCTTCAGAACAGATAATGGGCCTTTCAAGGATGCAATGCAGGGTTTTACCAAGAAAATT GTCCAGATGATGAAGAGTGAAAAGTTGTTTCAGTCTCAGGGTGGTCCAATCATTCTTTCACAGATTGAGAATGAGTATGG ACCGGAGAGTGGGGCGCTAGGAGGTGCTGGTCACGCGTACATAAATTGGGCTGCTAAGATGGCTGTTGGATTGGATACAG GAGTCCCCTGGGTTATGTGCAAGGAAACTGATGCCCCAGATCCTGTGATAAATTCGTGTAATGGCTTTTACTGTGATGAT TTCTCTCCAAATAAACCATACAAGCCTAGCATATGGACTGAGTCCTGGAGTGGCTGGTTTACAGAATTTGGTGGCCCAGT TCACCAGCGACCAGTTGAGGATCTAGCATTTGCAGTTGCTCGATTCATACAAAAGGGAGGAACTTTTGTGAATTATTACA TGTATCATGGAGGAACTAACTTTGGACGATCAGCTGGAGGCCCATTCATCACTGCAAGCTATGACTATGATGCTCCAATT GATGAATATGGTTTGATTAGGCAACCAAAATATAGTCATTTGAAGGATCTTCACGAAGCTATCAAGCGATGTGAGCATGC GTTGGTTTCTTCAGACCCTACTATTACATCATTAGGAACATTTCAGCAGGCTCATGTATTCTCGTCAAAAACTGGAGGTT GTGCAGCATTTCTTGCAAACTATCACGCACAGTCTGCTGCAAGAGTGACGTTCTATAACAGGAAATATGACTTGCCTCCT TGGTCCATAAGCATCCTTCCTGACTGCAAAGCGGATGTTTTTAATACTGCAAAAGTGAGAGTTCGAACTTCAAAGGTTCA AATGATTCCTGTCAATTTGAAGTTGTTCTCATGGGAGACCTATGATGAAGATCTCTCTTCTCTGGCTGAAAGTTCAAGGA TTACAGCTCCTGGACTCTTAGAACAGCTGAATGTTACCAGGGACTCCAGTGACTATCTTTGGTACATAACAAGTGTTGAC ATAAGTTCATCAGAATCGTTTCTTGGAGGAGGACACCAACCAAGCATTAATGTGCAGTCCGCAGGACATGGTATCCACGT GTTTGTTAATGGACAGTATTCAGGGTCGGCTTTTGGGGCAAAGGAACAAAGAAGTTGCAAGTTTAATGGGCCAGTCAGCC TACATGCTGGAACAAATAAAATTGCACTTCTCAGCGTTACAGTTGGATTACAGAATGTTGGCCGGCATTATGAAACATGG AAGACAGGAATCAGTGGTCCAGTTTTGCTCCAGGGTCTTGACCACGGACAGAAAGATTTGACGAGTAATAGATGGTCATA TCAGGTTGGCCTAAAAGGAGAGGCTATGAATTTGGTGTCTCCCAATGGGGCTTCATCTGTTGATTGGATCCAAGAGTCAC TAGCCACCCAAAGCCGGTCACAATTGAAATGGCACAAGGCTTATTTTAACACCCCCGAGGGAAATGAACCGTTGGCATTG GACCTGGGAAGTATGGGGAAGGGTCAAGTGTGGATCAATGGACAGAGCATAGGAAGATATTGGCTGGCTTATGCAAAGGG TGACTGTAATTCTTGCAGCTATTCTGGGACATTCCGGCCAGTAAAGTGCCAACTTGGATGTGGACAACCTACTCAACGAT GGTATCACGTTCCAAGGTCCTGGCTAAAGCCAACAAAGAACTTGATAGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGG AAGATATCTTTAGTAAAGAGAATGGTACATACTGCAAGAGTTCACAGTGAACCTGATTCAGAGAACTAA
Protein sequence (LotjaGi1g1v0423300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTNSVSKLLLVLLLTVLFAGFELIHCNVSYDRKALLINGQRRVLISGSIHYPRSTPEMWEDLIQKAKHGGIDVIDTYVF WDVHEPSPGNYNFEGRYDLVRFIKTVQKLGLYANLRIGPYVCAEWNFGGIPVWLKYVPGISFRTDNGPFKDAMQGFTKKI VQMMKSEKLFQSQGGPIILSQIENEYGPESGALGGAGHAYINWAAKMAVGLDTGVPWVMCKETDAPDPVINSCNGFYCDD FSPNKPYKPSIWTESWSGWFTEFGGPVHQRPVEDLAFAVARFIQKGGTFVNYYMYHGGTNFGRSAGGPFITASYDYDAPI DEYGLIRQPKYSHLKDLHEAIKRCEHALVSSDPTITSLGTFQQAHVFSSKTGGCAAFLANYHAQSAARVTFYNRKYDLPP WSISILPDCKADVFNTAKVRVRTSKVQMIPVNLKLFSWETYDEDLSSLAESSRITAPGLLEQLNVTRDSSDYLWYITSVD ISSSESFLGGGHQPSINVQSAGHGIHVFVNGQYSGSAFGAKEQRSCKFNGPVSLHAGTNKIALLSVTVGLQNVGRHYETW KTGISGPVLLQGLDHGQKDLTSNRWSYQVGLKGEAMNLVSPNGASSVDWIQESLATQSRSQLKWHKAYFNTPEGNEPLAL DLGSMGKGQVWINGQSIGRYWLAYAKGDCNSCSYSGTFRPVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPW KISLVKRMVHTARVHSEPDSEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| PANTHER | 9 | 735 | 727 | 0.0 | – | |
| PANTHER | 9 | 735 | 727 | 0.0 | ||
| Phobius | 21 | 27 | 7 | - | – | |
| Gene3D | 25 | 344 | 320 | 5.2E-110 | – | |
| SUPERFAMILY | 28 | 344 | 317 | 1.62E-106 | ||
| Phobius | 28 | 742 | 715 | - | – | |
| Pfam | 36 | 340 | 305 | 1.7E-117 | ||
| PRINTS | 39 | 56 | 18 | 2.5E-80 | ||
| PRINTS | 60 | 78 | 19 | 2.5E-80 | ||
| PRINTS | 115 | 134 | 20 | 2.5E-80 | ||
| PRINTS | 172 | 187 | 16 | 2.5E-80 | ||
| ProSitePatterns | 174 | 186 | 13 | - | ||
| PRINTS | 251 | 266 | 16 | 2.5E-80 | ||
| PRINTS | 288 | 303 | 16 | 2.5E-80 | ||
| PRINTS | 308 | 324 | 17 | 2.5E-80 | ||
| Pfam | 348 | 419 | 72 | 5.2E-27 | ||
| SUPERFAMILY | 403 | 574 | 172 | 6.52E-25 | ||
| SUPERFAMILY | 583 | 734 | 152 | 7.78E-26 | ||
| Gene3D | 595 | 733 | 139 | 7.8E-14 | ||
| PRINTS | 620 | 634 | 15 | 2.5E-80 | ||
| PRINTS | 647 | 663 | 17 | 2.5E-80 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0423300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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