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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0456000 |
Transcript ID | LotjaGi1g1v0456000.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphate transporter; TAIR: AT3G54700.1 phosphate transporter 1;7; Swiss-Prot: sp|Q494P0|PHT17_ARATH Probable inorganic phosphate transporter 1-7; TrEMBL-Plants: tr|Q1T6Z6|Q1T6Z6_LOTJA Phosphate transporter; Found in the gene: LotjaGi1g1v0456000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95911546..95913161) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAAAGAACAAATCCAGGTGCTAAATGCACTCGATGTGGCCAAAACACAATGGTACCATTTCACTGCAATTATAGT TGCTGGAATGGGCTTCTTCACTGATGCATATGATCTATTCTGCATATCCCTTGTCACCAAGTTGCTAGGCCGCATTTACT ACCACGTTGATGGCGCGGCGAAGCCCGGAACATTGCCTCCCAATGTATCAGCAGCTGTAAATGGCGTAGCTTTCTGTGGT ACACTTTCAGGACAGCTTTTCTTTGGCTGGCTTGGTGACAAAATGGGAAGAAAAAAAGTCTATGGCATGACCCTAATGGT GATGGTGATATGTTCTATTGGTTCTGGCCTTTCATTTGGAAATAGTCCAAAATCTGTGATGGCAACACTTTGCTTCTTCC GCTTCTGGCTTGGATTTGGAGTTGGTGGAGACTACCCTCTTTCTGCTACCATAATGTCTGAGTATTCTAATAAGAAGACT CGCGGAGCCTTCATCGCCGCGGTCTTTGCAATGCAGGGTTTTGGAATTCTGGCAGGTGGTATATTTGCTATTATAATTGC TACTGCATTCAAGGCTAAGTTTGATGCTCCGCCTTATGAGGTTGATCCCGTCGGTTCGACCGTTTTGGAAGCGGACTATA TTTGGAGGATAATTGTCATGGTTGGAGCATTGCCAGCTGCATTGACATACTATTGGAGGATGAAGATGCCGGAAACCGCT CGCTATACTGCTCTAGTTGCGAAGAACACAGAACAGGCTGCAAAGGATATGTCTAAGGTTCTTCAGGTTGAGATTGAAGC TGAGCCGAAAAATGATCAAGCACAGGCCAAAGCATTTGGCTTGTTCTCAAAGGAGTTTCTCCGCCGCCACGGGATGCATC TTCTCGGCACAACAAGCACATGGTTCTTGCTTGATATTGCATTTTACAGCCAGAATCTCTTCCAGAAAGACATCTTCAGC GCAATTGGTTGGATCCCTCCAGCAAAAACCATGAATGCCATTGAGGAAGTTTACAGAATTGCAAGAGCTCAGACGCTTAT TGCTCTCTGCAGTACTGTTCCTGGCTACTGGTTTACAGTGGCTTTTATAGACAGGATTGGAAGATTTCGTATTCAATTGA TGGGGTTCTTCTTCATGACAGTCTTCATGTTTGCTCTTGCCATTCCTTATGACCACTGGACTCATAAGGAGAACAGAATA GGTTTCGTGGTGATGTATTCCCTGACTTTCTTCTTCGCGAATTTCGGGCCTAATGCCACCACATTCGTCGTGCCGGCCGA GATTTTCCCGGCTAGATTCCGGTCCACTTGCCACGGAATTTCGTCCGCAGCCGGGAAGCTCGGGGCTATAGTCGGAGCAT TCGGGTTCTTGTACCTGGCACAGAACAAGGACAAGAGCAAAGCAGATGCAGGGTACCCTGCAGGTATTGGAGTGAAGAAT TCACTGCTTATGTTGGGCATGGTCAACATTTTAGGATTCTTTTGTACTTTCTTGGTGCCTGAGGGAAAGGGAAAATCTTT GGAGGAAATGTCAGGTGAGAATGAAGAGGAAGGTTGAAATGGAAGGAAGAGTCAGAGTCACATTCTTGCAGCACCACAAC TGTTCCATTGGTTTAG
CDS sequence (LotjaGi1g1v0456000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAGAACAAATCCAGGTGCTAAATGCACTCGATGTGGCCAAAACACAATGGTACCATTTCACTGCAATTATAGT TGCTGGAATGGGCTTCTTCACTGATGCATATGATCTATTCTGCATATCCCTTGTCACCAAGTTGCTAGGCCGCATTTACT ACCACGTTGATGGCGCGGCGAAGCCCGGAACATTGCCTCCCAATGTATCAGCAGCTGTAAATGGCGTAGCTTTCTGTGGT ACACTTTCAGGACAGCTTTTCTTTGGCTGGCTTGGTGACAAAATGGGAAGAAAAAAAGTCTATGGCATGACCCTAATGGT GATGGTGATATGTTCTATTGGTTCTGGCCTTTCATTTGGAAATAGTCCAAAATCTGTGATGGCAACACTTTGCTTCTTCC GCTTCTGGCTTGGATTTGGAATATTTGCTATTATAATTGCTACTGCATTCAAGGCTAAGTTTGATGCTCCGCCTTATGAG GTTGATCCCGTCGGTTCGACCGTTTTGGAAGCGGACTATATTTGGAGGATAATTGTCATGGTTGGAGCATTGCCAGCTGC ATTGACATACTATTGGAGGATGAAGATGCCGGAAACCGCTCGCTATACTGCTCTAGTTGCGAAGAACACAGAACAGGCTG CAAAGGATATGTCTAAGGTTCTTCAGGTTGAGATTGAAGCTGAGCCGAAAAATGATCAAGCACAGGCCAAAGCATTTGGC TTGTTCTCAAAGGAGTTTCTCCGCCGCCACGGGATGCATCTTCTCGGCACAACAAGCACATGGTTCTTGCTTGATATTGC ATTTTACAGCCAGAATCTCTTCCAGAAAGACATCTTCAGCGCAATTGGTTGGATCCCTCCAGCAAAAACCATGAATGCCA TTGAGGAAGTTTACAGAATTGCAAGAGCTCAGACGCTTATTGCTCTCTGCAGTACTGTTCCTGGCTACTGGTTTACAGTG GCTTTTATAGACAGGATTGGAAGATTTCGTATTCAATTGATGGGGTTCTTCTTCATGACAGTCTTCATGTTTGCTCTTGC CATTCCTTATGACCACTGGACTCATAAGGAGAACAGAATAGGTTTCGTGGTGATGTATTCCCTGACTTTCTTCTTCGCGA ATTTCGGGCCTAATGCCACCACATTCGTCGTGCCGGCCGAGATTTTCCCGGCTAGATTCCGGTCCACTTGCCACGGAATT TCGTCCGCAGCCGGGAAGCTCGGGGCTATAGTCGGAGCATTCGGGTTCTTGTACCTGGCACAGAACAAGGACAAGAGCAA AGCAGATGCAGGGTACCCTGCAGGTATTGGAGTGAAGAATTCACTGCTTATGTTGGGCATGGTCAACATTTTAGGATTCT TTTGTACTTTCTTGGTGCCTGAGGGAAAGGGAAAATCTTTGGAGGAAATGTCAGGTGAGAATGAAGAGGAAGGTTGA
Protein sequence (LotjaGi1g1v0456000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKEQIQVLNALDVAKTQWYHFTAIIVAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAKPGTLPPNVSAAVNGVAFCG TLSGQLFFGWLGDKMGRKKVYGMTLMVMVICSIGSGLSFGNSPKSVMATLCFFRFWLGFGIFAIIIATAFKAKFDAPPYE VDPVGSTVLEADYIWRIIVMVGALPAALTYYWRMKMPETARYTALVAKNTEQAAKDMSKVLQVEIEAEPKNDQAQAKAFG LFSKEFLRRHGMHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKTMNAIEEVYRIARAQTLIALCSTVPGYWFTV AFIDRIGRFRIQLMGFFFMTVFMFALAIPYDHWTHKENRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGI SSAAGKLGAIVGAFGFLYLAQNKDKSKADAGYPAGIGVKNSLLMLGMVNILGFFCTFLVPEGKGKSLEEMSGENEEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 18 | 18 | - | – | |
PANTHER | 5 | 141 | 137 | 8.6E-267 | – | |
PANTHER | 5 | 141 | 137 | 8.6E-267 | – | |
SUPERFAMILY | 12 | 471 | 460 | 2.62E-49 | ||
Phobius | 19 | 45 | 27 | - | – | |
TMHMM | 20 | 42 | 23 | - | – | |
ProSiteProfiles | 24 | 464 | 441 | 14.674 | ||
CDD | 25 | 463 | 439 | 1.55374E-155 | – | |
Pfam | 26 | 144 | 119 | 2.0E-9 | ||
Phobius | 46 | 64 | 19 | - | – | |
Phobius | 65 | 88 | 24 | - | – | |
TMHMM | 69 | 91 | 23 | - | – | |
Phobius | 89 | 99 | 11 | - | – | |
Phobius | 100 | 119 | 20 | - | – | |
TMHMM | 101 | 123 | 23 | - | – | |
Phobius | 120 | 130 | 11 | - | – | |
TMHMM | 130 | 149 | 20 | - | – | |
Phobius | 131 | 150 | 20 | - | – | |
PANTHER | 140 | 477 | 338 | 8.6E-267 | – | |
PANTHER | 140 | 477 | 338 | 8.6E-267 | – | |
Phobius | 151 | 172 | 22 | - | – | |
Pfam | 172 | 471 | 300 | 6.0E-27 | ||
TMHMM | 173 | 192 | 20 | - | – | |
Phobius | 173 | 192 | 20 | - | – | |
Phobius | 193 | 305 | 113 | - | – | |
TMHMM | 300 | 322 | 23 | - | – | |
Phobius | 306 | 323 | 18 | - | – | |
Phobius | 324 | 328 | 5 | - | – | |
TMHMM | 326 | 348 | 23 | - | – | |
Phobius | 329 | 348 | 20 | - | – | |
Phobius | 349 | 359 | 11 | - | – | |
Phobius | 360 | 379 | 20 | - | – | |
TMHMM | 361 | 383 | 23 | - | – | |
Phobius | 380 | 398 | 19 | - | – | |
TMHMM | 398 | 420 | 23 | - | – | |
Phobius | 399 | 420 | 22 | - | – | |
Phobius | 421 | 440 | 20 | - | – | |
Phobius | 441 | 460 | 20 | - | – | |
TMHMM | 441 | 460 | 20 | - | – | |
Phobius | 461 | 478 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0456000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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