Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0458300 |
Transcript ID | LotjaGi1g1v0458300.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mannan endo-1,4-beta-mannosidase; TAIR: AT5G01930.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9LZV3|MAN6_ARATH Mannan endo-1,4-beta-mannosidase 6; TrEMBL-Plants: tr|I1N3A5|I1N3A5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0458300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96169532..96172703) extracted from Lotus japonicus Gifu genome v1.2.
TCCTCTCTATCTCTGAAACTCAAGATATATAACATGATCCAAAAGAGCATGGACATTGTGGCTAGGTAACCAAGCTCAAT GGAGAGATTTGGGATACCCATTATTTCTTTGATCCTTCTTTTGATTCTTACTAAAAATTTAAGTTCCAATGCGTTTGGTG TCAGTATAGAGAATGAGGAAGTGCTCGATGAAGAGCAAAATTATATGGAAAAATCTATCTCAAATCAAGGGTATGATCTA AATTTGATATCCCTTCACCCTCTAGCTATCGTATTTTATATCTGCAATGTTATATGTTACGAATGAAAGTTGCAAGAAAT GCTGATATGACACAACTCACACAAGTACACAACTAACTTCATTATTTGACAGAAATCATTGGAGTAGTGAGAGATAATTA CTACCATATCTTATGTTTCGTATAGTAAAATTTAGTATATCCCATCATCTTATGTTGGTCAATCCATGTGCTTGTTTCTT TAACCATGATAGTTGAACTTTTTTACTTTTTGCTTTCTTACTAAAGGAGTGAAATGAGGGATATGGAAGAAGATGAATGG CAGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAACCTTTCTACATCAATGGATTCAACACCTACTGGCT GATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGAAGTGTTCAAACAAGCATCCTCAGTGGGCATGACAG TTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTC AAGGTGCTCCTTAATTCTTTTGGTATTTTATGTACTCCCACACTTGCTTAGTCTAATGAACTTTTTGCTACTTCTGATTG AAGCATTACGGAGAGGGTTAGACACCAATCTCATGAATTGTTTGCTTGTGTAAGCTTACATGGTGATTAGAATTAGATTA TGATACAATCAAATGGTGCTTGTTTGGAAATCATTCTATCATTGGTTCTGAAACCAGAATCAACTCTGAGGAGAAGCTTA CGTGAGTAGCTTCTGAGTTTCATATTGATTCTGAGGTAACAGAAGCTGATCTAAACATGCTGAGCTATTATCAGTGTAGC TAATTATCATTCCTCTCCGCAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAATATTGTCAT TGGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACTTGACTTCT GATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATGTTAAGGCAAGTTTATTTTCTTAGAGTTT CAGTTGGTTTGTTAACATGTTGTTTAGTTAGTTAGTTTGGTTATGTTAATTTGAGTTGGTTATGATGATATTGGTGTGTC TGATTGTAGTATAAATTGGTACTTGCATCTTCTTTTCATAAATATGGAACCTCCTTGGTTTCCTCTCTCACTTGAAATTC TCTCTTCCTCCCTCTCTCTCTTTCTCAATCTCCCCATTTTACTCAAACATTTAAATATAACAAGAGGACCAAACCACCAT GGGTTATTTTGATTTGGACACTGGAGTTAAGCTTGTTTTTATGTGCTGCAATGACTACATGTCTAGAAATTGCTTCCTGC TCATGATCCTGCTGTTTTCCTTCTTATTTCATTTCCATTACTCAGTAATCAATTACTTCCAATACTATATTTTCTCTGTA GACTGTGCTCAATAGAGTTAATACATACACAAATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGA ATGAGCCTCGATGCTCCTCAGATTCCACAGGTGATAAGTTACAGGTTTGCCCCTTAGAATCTTCTTCTGGCTTCCAAAAC AGAAGTGAAGGGTATACCCTGCATTTTCTAGTAGCATATAACCAATTCACAACACACTAACAATTAGAATTCCACTTGAA TATATATTTCTTAGGATTGGATACAAGAAATGGCATTCCATGTTAAGAAAATTGATCCAAAACACATGGTGGAGGTTGGA TTGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCTCAACAGGTTGGAACTGA TTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTCTTGGTAAGCTGTGTTTA GTAATGATATTGTTTTGCTCATATATGTGAAGTTATCATAAAAATGTCTTCTTCTCTCCATCCATTTATGCAAACTGTTA CATTCATACCAATATCATATTCATATGCATTTGCATACTTATCTAGTCTGTTATAAACACTACTATTTGTCTTAAATCTT AATAATGTATTTGTTCATCCAATTTCCTAACATTTCTAGTAGAAGAATAATATAAAATTATTTATGTGTATTCATTCGAT AGTTAGTTAGTTCATGACATGATATTAGAGTCTCTATAACCAAGTCTAAATTTCGATCCTCGTTGCCCCTGTTATTCTAG TATAAAATTGAATTTCAGCACACAATATATGAACCTGAGTATTGTGCACACTTCAAGTTCAATGTGAACATGTGTATGTT AGAAGTATAATATAAAATCATTCATTTTGTTTACCCAACAATTTAAGCTTTTGGGCTAATTGGTTCATGACAGTTTCTAA CTGAATTTCCTGGTTGAAGGATTTCACCACAAATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCAC ATTGAGGATGCTGAAAACTATCTTGGAATGCCTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAA TTCAACATACAGAGACACAGTAATCAGCACTGTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTG GAAGCCTTTTGTGGCAGGTTTTCCCTGATGGAACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCT TCCACCTCAAGTATTGTGTCCCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAG ATGTAAGAAGAAAAAAATAGTGGAGAAAATAATGTATCATGATGAACTCTAA
CDS sequence (LotjaGi1g1v0458300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGATTTGGGATACCCATTATTTCTTTGATCCTTCTTTTGATTCTTACTAAAAATTTAAGTTCCAATGCGTTTGG TGTCAGTATAGAGAATGAGGAAGTGCTCGATGAAGAGCAAAATTATATGGAAAAATCTATCTCAAATCAAGGGAGTGAAA TGAGGGATATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAACCTTTCTAC ATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGAAGTGTTCAA ACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCCC CATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAATA TTGTCATTGGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACTT GACTTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATTATAAATTGACTGTGCTCAATA GAGTTAATACATACACAAATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATGC TCCTCAGATTCCACAGGTGATAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTTAAGAAAATTGATCCAAAACA CATGGTGGAGGTTGGATTGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCTC AACAGGTTGGAACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTCT TGGATTTCACCACAAATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCACATTGAGGATGCTGAAAA CTATCTTGGAATGCCTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGACA CAGTAATCAGCACTGTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGGAAGCCTTTTGTGGCAG GTTTTCCCTGATGGAACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTGT GTCCCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGATGTAAGAAGAAAAAAA TAGTGGAGAAAATAATGTATCATGATGAACTCTAA
Protein sequence (LotjaGi1g1v0458300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERFGIPIISLILLLILTKNLSSNAFGVSIENEEVLDEEQNYMEKSISNQGSEMRDMEEDEWQMVQKKGSQFVVNDQPFY INGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLI LSLVNNWEAYGGKAQYVKWGKDAGLDLTSDDDFFSHPTLRNYYKAHYKLTVLNRVNTYTNITYKEDPTIFAWELMNEPRC SSDSTGDKLQDWIQEMAFHVKKIDPKHMVEVGLEGFYGPSTPQRVQFNPNTYAQQVGTDFIRNHQVLGVDFASVHIYADS WISPQIADTHLPFIKSWMEAHIEDAENYLGMPVVFSEFGVSSKDSGYNSTYRDTVISTVYSTILNSTKKGGSGAGSLLWQ VFPDGTDNMDDGYAVVFSKSPSTSSIVSLQSTRLALFNSFCSSKCKWRCKKKKIVEKIMYHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 25 | 25 | - | – | |
Phobius | 1 | 27 | 27 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
Phobius | 8 | 18 | 11 | - | – | |
PANTHER | 15 | 464 | 450 | 1.4E-285 | – | |
PANTHER | 15 | 464 | 450 | 1.4E-285 | – | |
Phobius | 19 | 27 | 9 | - | – | |
Phobius | 28 | 464 | 437 | - | – | |
Gene3D | 61 | 437 | 377 | 9.2E-132 | – | |
SUPERFAMILY | 65 | 421 | 357 | 8.26E-76 | ||
Pfam | 75 | 379 | 305 | 1.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0458300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…