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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0469200 |
Transcript ID | LotjaGi1g1v0469200.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | U-box domain-containing protein 4; TAIR: AT2G45720.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|I1L6Q4|I1L6Q4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0469200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97983654..97985366) extracted from Lotus japonicus Gifu genome v1.2.
AGCTATAATCATCGATTCTGCTCCTACCAAATCAAAATCATGGTGGAAGATAATGATGTTGCAATTGAATCACGTTCCAC AGAAGAATGGTTGTTGCATACACAAGAACTTGTACCTGTTGCAGTTAACAAAGCAAGAGAGGTTAAGGTTTTTTCTTGCA GATGGAAGGTGATCATTTCGAAATTAGAACAGATCCCGTCGTGTTTATCAGACTTATCAAGCCATCCATGCTTCTCAAAG AATGCTCTTTGCAAAGAACAGTTGCAGGCTGTGTCAAGAACACTCATTGAAGCAATTGAATTGGCTGTGTTCTGTGTGAA GGAAAGGTATGAGGGTAAGCTTCGCATGCAGAGTGATCTCGATGCATTAACCGGGAAGCTCGATTTGAATTTAAGGGACT GTATGCTTCTGATCAAAACTGGTATGCTTGGCGAGGCTTTTGCTTCATTAGCGCCAGCTGTGGTAGAATCAGATGTTGCT GCTACACACAACAACATAAGGGAATTGCTCGCGCGCCTTCAGATCGGTCACATGGAAGCAAAGCATAAAGCTTTAGACAA CCTTGTTGAGGTCATGAAAGAAGATGAGAAGAATGTTTTATCCGTTCTTGGTCGGAGTAACATTGCTTCTTTAGTTCAAT TGCTCACAGCAACATCACATAGGATAAGAGAGAAAGCAGTAACGGTTATCTGCTCGCTCGCGGAATCTGGAAGTTGTGAG AATTGGTTAGATTCTGAAGGGGTTTTGCCTCCTCTCATAAGGCTTGTTGAATCAGGCAGTGCTGTGGGGAAAGAGAAGGC TGCAATTACCCTTCAGCGGCTGTCAATGGAGGCGGAAACTGCGCGTGCGATCGTTGGAAACGGTGGTGTTCGCACGCTGG TTGAGCTTTGTCAAACCGGTGACTCCGTGTCACAAGCTGCTGCAGCTTGTGCTCTCAAGAACATATCAGCAGTTCCTGAG GTGAGACAAACTTTAGCTGAAGAAGGGGTTGTGAGGGTTGCCATCAATTTGTTGAACTGTGGAATGTTGTTAGGTTCTAA AGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAGCAACGAGAATTTAAGGAGGAGTGTTGTGTCAGAAGGTGGAG TGAGAAATCTTCTAGCTTATCTTGATGGTCCACTTCCTCAGGAATCTGCTGTTGGAGCATTGAGGAATCTGGTCGGATCG GTCTCGGATGAAACTTTGATTTCAATGGGGCTCCTTCCGCGCTTGGTTCATGTTCTGAGGTCTGGATCTTCCAGTGCTCA GCAGGCTGCCACATCCGCGATTTGCCGGGTTTGCAGGTCAACAGAGATGAAGAAATTGGTTGGTGAAGTGGGCTGCATTC CTCTCCTTGTGAAGATGCTTGAGGCTAAATCTAACAGTGCTAGGGAGGTTGCTGCACAGGCAATTGCAAGCTTGATGGTT CTGTCACGGAATCGCGGGGAAGTTAAGAAGGATGGTAAGAGTGTGCCAAATCTGGTTCAGTTGCTTGATTCAAGTCCTCA AAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATCACTTTCTTCTAGTAAGAAGTGTAGGAAGCTTATGATCTCAT ATGGGGCAATTGGGTATCTTAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTACATGAGAGGTTGGAAAGA GGGAAATTGAGGAGTTTGTTTAGCAAGAAATAG
CDS sequence (LotjaGi1g1v0469200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAAGATAATGATGTTGCAATTGAATCACGTTCCACAGAAGAATGGTTGTTGCATACACAAGAACTTGTACCTGT TGCAGTTAACAAAGCAAGAGAGGTTAAGGTTTTTTCTTGCAGATGGAAGGTGATCATTTCGAAATTAGAACAGATCCCGT CGTGTTTATCAGACTTATCAAGCCATCCATGCTTCTCAAAGAATGCTCTTTGCAAAGAACAGTTGCAGGCTGTGTCAAGA ACACTCATTGAAGCAATTGAATTGGCTGTGTTCTGTGTGAAGGAAAGGTATGAGGGTAAGCTTCGCATGCAGAGTGATCT CGATGCATTAACCGGGAAGCTCGATTTGAATTTAAGGGACTGTATGCTTCTGATCAAAACTGGTATGCTTGGCGAGGCTT TTGCTTCATTAGCGCCAGCTGTGGTAGAATCAGATGTTGCTGCTACACACAACAACATAAGGGAATTGCTCGCGCGCCTT CAGATCGGTCACATGGAAGCAAAGCATAAAGCTTTAGACAACCTTGTTGAGGTCATGAAAGAAGATGAGAAGAATGTTTT ATCCGTTCTTGGTCGGAGTAACATTGCTTCTTTAGTTCAATTGCTCACAGCAACATCACATAGGATAAGAGAGAAAGCAG TAACGGTTATCTGCTCGCTCGCGGAATCTGGAAGTTGTGAGAATTGGTTAGATTCTGAAGGGGTTTTGCCTCCTCTCATA AGGCTTGTTGAATCAGGCAGTGCTGTGGGGAAAGAGAAGGCTGCAATTACCCTTCAGCGGCTGTCAATGGAGGCGGAAAC TGCGCGTGCGATCGTTGGAAACGGTGGTGTTCGCACGCTGGTTGAGCTTTGTCAAACCGGTGACTCCGTGTCACAAGCTG CTGCAGCTTGTGCTCTCAAGAACATATCAGCAGTTCCTGAGGTGAGACAAACTTTAGCTGAAGAAGGGGTTGTGAGGGTT GCCATCAATTTGTTGAACTGTGGAATGTTGTTAGGTTCTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAG CAACGAGAATTTAAGGAGGAGTGTTGTGTCAGAAGGTGGAGTGAGAAATCTTCTAGCTTATCTTGATGGTCCACTTCCTC AGGAATCTGCTGTTGGAGCATTGAGGAATCTGGTCGGATCGGTCTCGGATGAAACTTTGATTTCAATGGGGCTCCTTCCG CGCTTGGTTCATGTTCTGAGGTCTGGATCTTCCAGTGCTCAGCAGGCTGCCACATCCGCGATTTGCCGGGTTTGCAGGTC AACAGAGATGAAGAAATTGGTTGGTGAAGTGGGCTGCATTCCTCTCCTTGTGAAGATGCTTGAGGCTAAATCTAACAGTG CTAGGGAGGTTGCTGCACAGGCAATTGCAAGCTTGATGGTTCTGTCACGGAATCGCGGGGAAGTTAAGAAGGATGGTAAG AGTGTGCCAAATCTGGTTCAGTTGCTTGATTCAAGTCCTCAAAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATC ACTTTCTTCTAGTAAGAAGTGTAGGAAGCTTATGATCTCATATGGGGCAATTGGGTATCTTAAGAAACTTACTGAGATGG ACATTCCAGGAGCTAAAAAGCTACATGAGAGGTTGGAAAGAGGGAAATTGAGGAGTTTGTTTAGCAAGAAATAG
Protein sequence (LotjaGi1g1v0469200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEDNDVAIESRSTEEWLLHTQELVPVAVNKAREVKVFSCRWKVIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSR TLIEAIELAVFCVKERYEGKLRMQSDLDALTGKLDLNLRDCMLLIKTGMLGEAFASLAPAVVESDVAATHNNIRELLARL QIGHMEAKHKALDNLVEVMKEDEKNVLSVLGRSNIASLVQLLTATSHRIREKAVTVICSLAESGSCENWLDSEGVLPPLI RLVESGSAVGKEKAAITLQRLSMEAETARAIVGNGGVRTLVELCQTGDSVSQAAAACALKNISAVPEVRQTLAEEGVVRV AINLLNCGMLLGSKEYAAECLQNLTASNENLRRSVVSEGGVRNLLAYLDGPLPQESAVGALRNLVGSVSDETLISMGLLP RLVHVLRSGSSSAQQAATSAICRVCRSTEMKKLVGEVGCIPLLVKMLEAKSNSAREVAAQAIASLMVLSRNRGEVKKDGK SVPNLVQLLDSSPQNTAKKYAVSCLGSLSSSKKCRKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 557 | 556 | 0.0 | – | |
PANTHER | 2 | 557 | 556 | 0.0 | – | |
Gene3D | 150 | 372 | 223 | 4.9E-32 | ||
SUPERFAMILY | 153 | 534 | 382 | 2.43E-44 | ||
SMART | 182 | 222 | 41 | 90.0 | ||
ProSiteProfiles | 234 | 276 | 43 | 9.012 | ||
SMART | 264 | 304 | 41 | 0.46 | ||
Pfam | 269 | 304 | 36 | 7.2E-5 | ||
SMART | 305 | 346 | 42 | 67.0 | ||
SMART | 347 | 386 | 40 | 9.1 | ||
Gene3D | 373 | 547 | 175 | 4.0E-26 | ||
SMART | 387 | 426 | 40 | 17.0 | ||
Pfam | 392 | 426 | 35 | 3.2E-4 | ||
SMART | 427 | 467 | 41 | 0.51 | ||
Pfam | 428 | 465 | 38 | 2.4E-4 | ||
SMART | 468 | 510 | 43 | 27.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0469200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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