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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011989
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 891 results. Now displaying 1 of 18 with 50 rows per page. This search has taken 5.723s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1697430.1
LjCerebrus RecName: Full=Putative E3 ubiquitin-protein ligase LIN-1; AltName: Full=Protein cerberus] gi|353558931|sp|C6L7U1.2|LIN1_LOTJA chr5 24288104 24296633 +
2 domain predictions
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Lj0g3v0006439.1
n.a. PREDICTED: protein VAC14 homolog [Cicer arietinum] gi|502123772|ref|XP_004498253.1| chr0 2476011 2487918 -
2 domain predictions
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Lj0g3v0014579.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Cicer arietinum] gi|502122252|ref|XP_004497654.1| chr0 5582216 5586027 +
2 domain predictions
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Lj0g3v0023039.1
n.a. PREDICTED: U-box domain-containing protein 20-like [Glycine max] gi|356553261|ref|XP_003544976.1| chr0 9239415 9240632 -
2 domain predictions
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Lj0g3v0033019.1
n.a. ARM repeat superfamily protein [Theobroma cacao] gi|508719314|gb|EOY11211.1| chr0 10438995 10442169 -
2 domain predictions
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Lj0g3v0035899.1
n.a. HEAT repeat-containing protein 5B-like protein, partial [Caragana korshinskii] gi|480328057|gb|AGJ83730.1| chr0 11417501 11419211 -
2 domain predictions
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Lj0g3v0047679.1
n.a. PREDICTED: pumilio homolog 1-like isoform X2 [Cicer arietinum] gi|502096967|ref|XP_004490876.1| chr0 15970726 15979220 +
2 domain predictions
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Lj0g3v0048699.1
n.a. PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera] gi|225432860|ref|XP_002283908.1| chr0 16448541 16463430 +
2 domain predictions
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Lj0g3v0068969.1
n.a. PREDICTED: vacuolar protein 8-like isoform X1 [Cicer arietinum] gi|502146973|ref|XP_004506680.1| chr0 24770747 24771322 -
2 domain predictions
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Lj0g3v0072459.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr0 26881203 26882884 -
2 domain predictions
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Lj0g3v0076489.1
n.a. PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum] gi|502174874|ref|XP_004515619.1| chr0 29166796 29174490 +
2 domain predictions
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Lj0g3v0076649.1
n.a. PREDICTED: vacuolar protein 8-like [Glycine max] gi|356532060|ref|XP_003534592.1| chr0 29291299 29293291 +
2 domain predictions
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Lj0g3v0078379.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 30164640 30165155 +
2 domain predictions
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Lj0g3v0084719.1
n.a. PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like [Glycine max] gi|356550859|ref|XP_003543800.1| chr0 33750347 33769255 +
2 domain predictions
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Lj0g3v0085639.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 34274937 34279183 +
2 domain predictions
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Lj0g3v0085639.2
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 34274937 34279183 +
2 domain predictions
 –
Lj0g3v0085649.1
n.a. PREDICTED: RRP12-like protein-like [Cicer arietinum] gi|502166370|ref|XP_004513872.1| chr0 34279306 34281678 +
2 domain predictions
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Lj0g3v0097739.1
n.a. EFR3-like protein [Medicago truncatula] gi|357454465|ref|XP_003597513.1| chr0 41332240 41344946 -
2 domain predictions
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Lj0g3v0108539.1
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] gi|356513973|ref|XP_003525682.1| chr0 46951852 46952440 +
2 domain predictions
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Lj0g3v0108549.1
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468-like [Cicer arietinum] gi|502090691|ref|XP_004489310.1| chr0 46952872 46955543 +
2 domain predictions
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Lj0g3v0108549.2
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468-like [Cicer arietinum] gi|502090691|ref|XP_004489310.1| chr0 46952872 46955543 +
2 domain predictions
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Lj0g3v0123929.1
n.a. Beta-catenin-like protein [Medicago truncatula] gi|357460647|ref|XP_003600605.1| chr0 55604620 55607890 +
2 domain predictions
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Lj0g3v0125799.1
n.a. n.a. chr0 56558662 56561847 +
2 domain predictions
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Lj0g3v0162479.1
n.a. PREDICTED: U-box domain-containing protein 7-like [Glycine max] gi|356555412|ref|XP_003546026.1| chr0 76621602 76624789 -
2 domain predictions
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Lj0g3v0179259.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Glycine max] gi|356532089|ref|XP_003534606.1| chr0 87006597 87011369 +
2 domain predictions
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Lj0g3v0179269.1
n.a. PREDICTED: LOW QUALITY PROTEIN: armadillo repeat-containing kinesin-like protein 2-like [Cicer arietinum] gi|502104771|ref|XP_004492644.1| chr0 87012005 87013995 +
2 domain predictions
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Lj0g3v0180319.1
n.a. PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max] gi|356521809|ref|XP_003529543.1| chr0 87722407 87723520 -
2 domain predictions
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Lj0g3v0182159.1
n.a. PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATM-like [Cicer arietinum] gi|502133902|ref|XP_004501929.1| chr0 88980908 89011942 -
2 domain predictions
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Lj0g3v0188449.2
n.a. PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] gi|502129552|ref|XP_004500342.1| chr0 92100909 92112078 -
2 domain predictions
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Lj0g3v0198949.1
n.a. PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi|502131681|ref|XP_004501065.1| chr0 97349060 97371004 -
2 domain predictions
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Lj0g3v0199179.1
n.a. PREDICTED: protein furry homolog-like [Cicer arietinum] gi|502148805|ref|XP_004507276.1| chr0 97571273 97587431 -
2 domain predictions
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Lj0g3v0200239.1
n.a. U-box domain-containing protein [Medicago truncatula] gi|357514475|ref|XP_003627526.1| chr0 98752758 98760421 -
2 domain predictions
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Lj0g3v0204029.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Cicer arietinum] gi|502122250|ref|XP_004497653.1| chr0 101175101 101176461 -
2 domain predictions
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Lj0g3v0211239.1
n.a. PREDICTED: transformation/transcription domain-associated protein-like isoform X1 [Cicer arietinum] gi|502161350|ref|XP_004512131.1| chr0 106353132 106367012 -
2 domain predictions
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Lj0g3v0219909.1
n.a. PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1| chr0 112469828 112477344 -
2 domain predictions
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Lj0g3v0219909.3
n.a. PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1| chr0 112469828 112477344 -
2 domain predictions
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Lj0g3v0230519.1
n.a. Photosystem I P700 chlorophyll a apoprotein [Medicago truncatula] gi|357463453|ref|XP_003602008.1| chr0 119415477 119418526 +
2 domain predictions
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Lj0g3v0235399.1
n.a. Armadillo/beta-catenin-like repeat, C2 calcium/lipid-binding domain (CaLB) protein isoform 1 [Theobroma cacao] gi|508724457|gb|EOY16354.1| chr0 121975395 121986177 +
2 domain predictions
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Lj0g3v0235839.1
n.a. PREDICTED: coatomer subunit gamma-like [Cicer arietinum] gi|502130920|ref|XP_004500815.1| chr0 122187306 122194006 -
2 domain predictions
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Lj0g3v0238949.1
n.a. DDB1-CUL4 associated factor 1 [Theobroma cacao] gi|508781842|gb|EOY29098.1| chr0 123982475 123984940 -
2 domain predictions
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Lj0g3v0243869.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 126564978 126566851 -
2 domain predictions
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Lj0g3v0248689.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Cicer arietinum] gi|502090026|ref|XP_004489097.1| chr0 128895576 128896850 -
2 domain predictions
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Lj0g3v0248759.1
n.a. PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi|502147349|ref|XP_004506749.1| chr0 128913313 128927071 +
2 domain predictions
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Lj0g3v0248759.2
n.a. PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi|502147349|ref|XP_004506749.1| chr0 128913313 128927071 +
2 domain predictions
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Lj0g3v0248759.3
n.a. PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi|502147349|ref|XP_004506749.1| chr0 128913313 128927071 +
2 domain predictions
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Lj0g3v0248759.4
n.a. PREDICTED: symplekin-like isoform X1 [Cicer arietinum] gi|502147349|ref|XP_004506749.1| chr0 128913313 128927071 +
2 domain predictions
 –
Lj0g3v0248789.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Glycine max] gi|356568604|ref|XP_003552500.1| chr0 128931432 128934505 +
2 domain predictions
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Lj0g3v0249229.1
n.a. PREDICTED: pumilio homolog 12-like [Cicer arietinum] gi|502132806|ref|XP_004501537.1| chr0 129168590 129171573 +
2 domain predictions
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Lj0g3v0250269.1
n.a. PREDICTED: hsp70-binding protein 1-like [Glycine max] gi|356496082|ref|XP_003516899.1| chr0 129744879 129749252 +
2 domain predictions
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Lj0g3v0252669.1
n.a. PREDICTED: U-box domain-containing protein 14-like [Glycine max] gi|356524336|ref|XP_003530785.1| chr0 131072397 131073677 -
2 domain predictions
 –