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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0472200 |
Transcript ID | LotjaGi1g1v0472200.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphomannomutase; TAIR: AT2G45790.1 phosphomannomutase; Swiss-Prot: sp|Q1W376|PMM_SOYBN Phosphomannomutase; TrEMBL-Plants: tr|I3SL53|I3SL53_LOTJA Phosphomannomutase; Found in the gene: LotjaGi1g1v0472200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98271621..98274044) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTCGCGAAACCTGGTGTGATTGCTTTGTTTGATGTTGATGGGACTCTTACAGCTCCCAGAAAGGTATTTGTTTC TTCTGGAGCAAATGACGTGTGAAGTTATTTTGTATTTTTATTGCAATCCATATATCAATGCAGTGATATGGTTCTGAATT CTAAATCAGATCTATTTTCTGTATGTTACTTGATGTTTACTCACCAGATCACGCATAATAAATTGCGGTGATCCCTTTGC TGAATAAAACTTGAATATCTGTATTTTTTTCCTTTTGATTGTGTAGTCTTTGGATCACCTCTATTAACTGTTTTTTCACT CAAATGCTAGGTGGCTAATTCAGAGATGCTGGGGTTCATGCAAGAACTGCGGAAGGTGCGTGATCTGGATGTATTTTTGT TTTTTTAACATTACATGCATTTTATTTTTCGAATCCTGATGTCCTTTATCTTCATCTCCCCTACTGTGCTAAACCTGTTC TTGGAGTTCTTTGTTCTTTTTATTTTGCTTGATTTTTCGCGTTGTCTGGCTACAGGTTGTAACAGTTGGAGTTGTTGGGG GGTCTGATCTCATAAAGATATCTGAGCAACTTGGCAGCACAGGTTAGCTATAAGTAGCTCCTTGGTTTCTGATGCTGCAA TGTTTAAAACAATTAGGAAGCCACATGTTCACCTTTCTTATTCTTGTTTGTTGTCCAAAATTGGCTGAAGTAGAAGCTGA TAATCATTGTTTTACAGTTTTCCTTTACATTCCTTTCTTTCTTCTTCCTTCTCATATTAGATAAGCTATTCATGTGAATT ACAAAAGAAAGAAACAAAGAAATAGAAGGAATTATAACCCAATTTGTCTGTTGCAGTTACCCATGACTATGATTATGTAT TTTCTGAGAATGGTCTTGTGGCTCATAAGCAAGGAAAGCTCATTGGAACTGAGGTACACCTCAAACTCAATCCATAATAG AAGCAAATTGCCATGATCCAGGGTTTATGTGCTGATCCTTTTGAGTTATTTAAAAGAACACAAGTGGCACTATGTTGTGA CTTGTAGCTGAAGCCGGAATTATTAAAAATTCACAAAGCTGAATGCTTTTTATAAAGTTTATAACTGAAATTATAGCCAT TAGCAAAATCACTTCTCCCAGTCCACATACATACTCCCTGTTGTTAAGCAAAACTTTTTTTCTCTTATACACTGACAAGT TGTGAGTTGCCCTCTTTTCAGAGTTTGAAGACATTTCTAGGGGACGAAAAGCTCAAGGTAAGACTTAAATTTCCATTCCT ATTCAATCCATCTTACATATTTGTAACTGAAGCTACTATGACTAGGTTGTTACCTGCTCAGATATGCTTGACATAACATA ACCTAAACAATGGCTAGAAAAATTAAGTTGATCTGTGATTTCATGAAGGGTAAGTGTAGAAGATATGTGAATAAAGGAGA TTATACTTTTTTGTTCTGGTATTAAAATTCAATGAAGTTGTGAACATATAAAGAATAAATTTTATTTTAATCAATTCTGT TAATAACAACAGAATGGGGTATTTTTTTGCAGGAATTTATTAACTTTACTCTGCATTACATTGCTGACTTGGATATCCCT ATTAAGAGGTTAGTGAGATTCAGAAGTTAATCTCACATTTGTTATTGGAAACTTTTAGTCCTAATCAATATAAGAACATT TTTAGGGGAACATTTATAGAGTTCCGTAGTGGGATGCTGAATGTGTCACCAATTGGGAGAAACTGTAGCCAAGAAGAAAG AGATGAATTTGAGAAGTATGACAAGGTGATGTTTTTTTAGTTTTATCATATTTCCAAGAGCTTTCACTTCCTTTAATTTG AAATGCTGAGAGTATAATTTTATCCTAAAAGTTTGCAATTTAAGTTCTCAGGTTCAAAACATTCGCCCGAAAATGGTTTC TGTACTTCGTGAGAAGTTTGCTCATCTTAACCTGACATTTTCTATTGGAGGACAGATAAGCTTTGACGTAAGTAATGATC TTCATTATGATATGTGACTTTATTGTTGTTCAAGTTATAGGCCAACAGGTCTTACTTTTTATATATTCTCCAAAGGTTTT TCCTCAAGGTTGGGACAAAACATACTGCCTGAGATACCTTGATGCTTTCAATGAAATCCACTTCTTTGGTGACAAAACTT ACAAGGTTAGTCCATAAATATATTATGCAGTATATGTTTGGACTTTGGAGCATCAAATCAACATCTTATATTTTTCAACC TCCCTGCATAGGTTTGGTAGATCATTTTGTGTTCTATGGAGTCTTCATTTGCTTGATCCCCTTTTTTCTTTGTTTCAGCT ATGTGATATATATTATAAATTTTATGAAAATCATTCAAATGAGGGGTGGCAAAAACTATAGGTAGCAAGTAATTGTCATA TTGACTCAGTTTTCTGGACACTGA
CDS sequence (LotjaGi1g1v0472200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTCGCGAAACCTGGTGTGATTGCTTTGTTTGATGTTGATGGGACTCTTACAGCTCCCAGAAAGGTGGCTAATTC AGAGATGCTGGGGTTCATGCAAGAACTGCGGAAGGTTGTAACAGTTGGAGTTGTTGGGGGGTCTGATCTCATAAAGATAT CTGAGCAACTTGGCAGCACAGTTACCCATGACTATGATTATGTATTTTCTGAGAATGGTCTTGTGGCTCATAAGCAAGGA AAGCTCATTGGAACTGAGAGTTTGAAGACATTTCTAGGGGACGAAAAGCTCAAGGAATTTATTAACTTTACTCTGCATTA CATTGCTGACTTGGATATCCCTATTAAGAGGGGAACATTTATAGAGTTCCGTAGTGGGATGCTGAATGTGTCACCAATTG GGAGAAACTGTAGCCAAGAAGAAAGAGATGAATTTGAGAAGTATGACAAGGTTCAAAACATTCGCCCGAAAATGGTTTCT GTACTTCGTGAGAAGTTTGCTCATCTTAACCTGACATTTTCTATTGGAGGACAGATAAGCTTTGACGTTTTTCCTCAAGG TTGGGACAAAACATACTGCCTGAGATACCTTGATGCTTTCAATGAAATCCACTTCTTTGGTGACAAAACTTACAAGCTAT GTGATATATATTATAAATTTTATGAAAATCATTCAAATGAGGGGTGGCAAAAACTATAG
Protein sequence (LotjaGi1g1v0472200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVAKPGVIALFDVDGTLTAPRKVANSEMLGFMQELRKVVTVGVVGGSDLIKISEQLGSTVTHDYDYVFSENGLVAHKQG KLIGTESLKTFLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVQNIRPKMVS VLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDAFNEIHFFGDKTYKLCDIYYKFYENHSNEGWQKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 216 | 212 | 3.9E-126 | – | |
PANTHER | 5 | 216 | 212 | 3.9E-126 | ||
CDD | 9 | 212 | 204 | 4.88634E-110 | ||
Gene3D | 9 | 210 | 202 | 1.7E-90 | ||
TIGRFAM | 10 | 208 | 199 | 9.5E-23 | ||
SUPERFAMILY | 10 | 211 | 202 | 4.4E-51 | ||
Pfam | 31 | 217 | 187 | 4.7E-90 | ||
Gene3D | 87 | 188 | 102 | 1.7E-90 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Phosphomannomutase activity | Catalysis of the reaction: alpha-D-mannose 1-phosphate = D-mannose 6-phosphate. | ||
Biological process | GDP-mannose biosynthetic process | The chemical reactions and pathways resulting in the formation of GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate. |
Expression pattern of LotjaGi1g1v0472200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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