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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006379
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 70 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.062s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007959.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 3163414 3166656 -
2 domain predictions
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Lj0g3v0081409.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|502154799|ref|XP_004509840.1| chr0 31814321 31819651 -
2 domain predictions
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Lj0g3v0140249.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356516692|ref|XP_003527027.1| chr0 64406952 64413330 +
2 domain predictions
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Lj0g3v0159069.1
n.a. PREDICTED: phosphomannomutase-like [Cicer arietinum] gi|502105029|ref|XP_004492705.1| chr0 74510961 74514745 +
2 domain predictions
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Lj0g3v0208379.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356518491|ref|XP_003527912.1| chr0 104381976 104385264 -
2 domain predictions
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Lj0g3v0258269.1
n.a. Trehalose-phosphate phosphatase [Medicago truncatula] gi|357455863|ref|XP_003598212.1| chr0 134097854 134102058 +
2 domain predictions
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Lj0g3v0259849.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 135043824 135044922 -
2 domain predictions
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Lj0g3v0264009.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|502123725|ref|XP_004498234.1| chr0 136878207 136882450 +
2 domain predictions
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Lj0g3v0291639.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356575586|ref|XP_003555920.1| chr0 151327704 151332006 -
2 domain predictions
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Lj0g3v0295639.1
n.a. Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi|508782554|gb|EOY29810.1| chr0 153593023 153601407 +
2 domain predictions
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Lj0g3v0306329.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356540303|ref|XP_003538629.1| chr0 159833363 159838929 -
2 domain predictions
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Lj0g3v0306329.2
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356540303|ref|XP_003538629.1| chr0 159833363 159838869 -
2 domain predictions
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Lj0g3v0306739.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356531696|ref|XP_003534412.1| chr0 160074231 160078167 -
2 domain predictions
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Lj0g3v0306739.2
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356531696|ref|XP_003534412.1| chr0 160074231 160078167 -
2 domain predictions
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Lj0g3v0349429.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356562495|ref|XP_003549506.1| chr0 183496961 183498564 +
2 domain predictions
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Lj0g3v0359299.1
n.a. Trehalose-phosphate phosphatase [Medicago truncatula] gi|357476939|ref|XP_003608755.1| chr0 189155917 189159817 -
2 domain predictions
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Lj0g3v0359299.2
n.a. Trehalose-phosphate phosphatase [Medicago truncatula] gi|357476939|ref|XP_003608755.1| chr0 189155917 189159817 -
2 domain predictions
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Lj1g3v0414960.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356516692|ref|XP_003527027.1| chr1 5086713 5093424 +
2 domain predictions
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Lj2g3v1378960.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356501787|ref|XP_003519705.1| chr2 21822428 21827284 -
2 domain predictions
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Lj3g3v1517520.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356543102|ref|XP_003540002.1| chr3 19368332 19373151 +
2 domain predictions
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Lj4g3v2820240.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356540303|ref|XP_003538629.1| chr4 37698962 37702038 +
2 domain predictions
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Lj4g3v3113340.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|502138256|ref|XP_004503340.1| chr4 41661567 41666368 -
2 domain predictions
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Lj5g3v2179940.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|502120693|ref|XP_004497050.1| chr5 31400789 31405398 -
2 domain predictions
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Lj6g3v0145980.1
n.a. Sucrose-phosphatase [Medicago truncatula] gi|357439171|ref|XP_003589862.1| chr6 1557467 1563410 -
2 domain predictions
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Lj6g3v0156190.1
n.a. Sucrose-phosphatase [Medicago truncatula] gi|357439173|ref|XP_003589863.1| chr6 1655731 1661874 +
2 domain predictions
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Lj6g3v0156190.2
n.a. Sucrose-phosphatase [Medicago truncatula] gi|357439173|ref|XP_003589863.1| chr6 1655731 1661874 +
2 domain predictions
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LotjaGi1g1v0147200.1
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G10100.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|F4KFG5|TPPI_ARATH Probable trehalose-phosphate phosphatase I; TrEMBL-Plants: tr|A0A0L9UYE0|A0A0L9UYE0_PHAAN Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi1g1v0147200 LjG1.1_chr1 25087377 25090667 +
2 domain predictions
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LotjaGi1g1v0182400.1
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT1G23870.1 trehalose-phosphatase/synthase 9; Swiss-Prot: sp|Q9LRA7|TPS9_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 9; TrEMBL-Plants: tr|A0A0S3RFR8|A0A0S3RFR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182400 LjG1.1_chr1 35586989 35594063 +
2 domain predictions
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LotjaGi1g1v0182400.2
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT1G23870.1 trehalose-phosphatase/synthase 9; Swiss-Prot: sp|Q9LRA7|TPS9_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 9; TrEMBL-Plants: tr|A0A0S3RFR8|A0A0S3RFR8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182400 LjG1.1_chr1 35589097 35593890 +
2 domain predictions
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LotjaGi1g1v0222600.1
n.a. Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|I1M9Z5|I1M9Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0222600 LjG1.1_chr1 49598785 49608740 +
2 domain predictions
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LotjaGi1g1v0222600.2
n.a. Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|A0A0B2SRP5|A0A0B2SRP5_GLYSO Putative rRNA maturation factor; Found in the gene: LotjaGi1g1v0222600 LjG1.1_chr1 49598933 49607380 +
2 domain predictions
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LotjaGi1g1v0241200.1
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G10100.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|F4KFG5|TPPI_ARATH Probable trehalose-phosphate phosphatase I; TrEMBL-Plants: tr|A0A0B2QIN7|A0A0B2QIN7_GLYSO Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi1g1v0241200 LjG1.1_chr1 57635517 57639215 -
2 domain predictions
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LotjaGi1g1v0241200.2
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G10100.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|F4KFG5|TPPI_ARATH Probable trehalose-phosphate phosphatase I; TrEMBL-Plants: tr|A0A072V0M4|A0A072V0M4_MEDTR Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi1g1v0241200 LjG1.1_chr1 57635532 57639133 -
2 domain predictions
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LotjaGi1g1v0472200.1
n.a. Phosphomannomutase; TAIR: AT2G45790.1 phosphomannomutase; Swiss-Prot: sp|Q1W376|PMM_SOYBN Phosphomannomutase; TrEMBL-Plants: tr|G7L3I4|G7L3I4_MEDTR Phosphomannomutase; Found in the gene: LotjaGi1g1v0472200 LjG1.1_chr1 98270531 98275459 +
2 domain predictions
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LotjaGi1g1v0472200.2
n.a. Phosphomannomutase; TAIR: AT2G45790.1 phosphomannomutase; Swiss-Prot: sp|Q1W376|PMM_SOYBN Phosphomannomutase; TrEMBL-Plants: tr|G7L3I4|G7L3I4_MEDTR Phosphomannomutase; Found in the gene: LotjaGi1g1v0472200 LjG1.1_chr1 98270615 98275013 +
2 domain predictions
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LotjaGi1g1v0472200.3
n.a. Phosphomannomutase; TAIR: AT2G45790.1 phosphomannomutase; Swiss-Prot: sp|Q1W376|PMM_SOYBN Phosphomannomutase; TrEMBL-Plants: tr|I3SL53|I3SL53_LOTJA Phosphomannomutase; Found in the gene: LotjaGi1g1v0472200 LjG1.1_chr1 98271621 98274044 +
2 domain predictions
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LotjaGi2g1v0001300.1
n.a. Trehalose-6-phosphate synthase; TAIR: AT1G68020.2 UDP-Glycosyltransferase / trehalose-phosphatase family protein; Swiss-Prot: sp|Q94AH8|TPS6_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 6; TrEMBL-Plants: tr|A0A072VR84|A0A072VR84_MEDTR Trehalose-6-phosphate synthase domain protein; Found in the gene: LotjaGi2g1v0001300 LjG1.1_chr2 924832 929694 +
2 domain predictions
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LotjaGi2g1v0001300.2
n.a. Trehalose-6-phosphate synthase; TAIR: AT1G68020.2 UDP-Glycosyltransferase / trehalose-phosphatase family protein; Swiss-Prot: sp|Q94AH8|TPS6_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 6; TrEMBL-Plants: tr|A0A072VR84|A0A072VR84_MEDTR Trehalose-6-phosphate synthase domain protein; Found in the gene: LotjaGi2g1v0001300 LjG1.1_chr2 924864 929280 +
2 domain predictions
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LotjaGi2g1v0273900.1
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT4G17770.1 trehalose phosphatase/synthase 5; Swiss-Prot: sp|O23617|TPS5_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 5; TrEMBL-Plants: tr|I1NFN9|I1NFN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273900 LjG1.1_chr2 74520604 74525197 -
2 domain predictions
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LotjaGi2g1v0273900.2
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT4G17770.1 trehalose phosphatase/synthase 5; Swiss-Prot: sp|O23617|TPS5_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 5; TrEMBL-Plants: tr|I1NFN9|I1NFN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273900 LjG1.1_chr2 74520619 74525119 -
2 domain predictions
 –
LotjaGi2g1v0273900.3
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT4G17770.1 trehalose phosphatase/synthase 5; Swiss-Prot: sp|O23617|TPS5_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 5; TrEMBL-Plants: tr|I1NFN9|I1NFN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273900 LjG1.1_chr2 74520672 74525089 -
2 domain predictions
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LotjaGi2g1v0273900.4
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT4G17770.1 trehalose phosphatase/synthase 5; Swiss-Prot: sp|O23617|TPS5_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 5; TrEMBL-Plants: tr|I1NFN9|I1NFN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273900 LjG1.1_chr2 74521122 74524325 -
2 domain predictions
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LotjaGi2g1v0318700.1
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT1G23870.1 trehalose-phosphatase/synthase 9; Swiss-Prot: sp|Q9LRA7|TPS9_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 9; TrEMBL-Plants: tr|A0A151TGL2|A0A151TGL2_CAJCA Putative alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 9; Found in the gene: LotjaGi2g1v0318700 LjG1.1_chr2 79356589 79362836 -
2 domain predictions
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LotjaGi2g1v0318700.2
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT1G23870.1 trehalose-phosphatase/synthase 9; Swiss-Prot: sp|Q9LRA7|TPS9_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 9; TrEMBL-Plants: tr|A0A151TGL2|A0A151TGL2_CAJCA Putative alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 9; Found in the gene: LotjaGi2g1v0318700 LjG1.1_chr2 79358251 79361040 -
2 domain predictions
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LotjaGi3g1v0253100.1
n.a. Trehalose-6-phosphate synthase, putative; TAIR: AT1G06410.1 trehalose-phosphatase/synthase 7; Swiss-Prot: sp|Q9LMI0|TPS7_ARATH Probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] 7; TrEMBL-Plants: tr|I1LSH8|I1LSH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0253100 LjG1.1_chr3 42676772 42682299 -
2 domain predictions
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LotjaGi3g1v0327600.1
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G51460.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O64896|TPPA_ARATH Trehalose-phosphate phosphatase A; TrEMBL-Plants: tr|G7IYG6|G7IYG6_MEDTR Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi3g1v0327600 LjG1.1_chr3 69526111 69531034 +
2 domain predictions
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LotjaGi3g1v0394300.1
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT4G39770.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q6H5L4|TPP7_ORYSJ Probable trehalose-phosphate phosphatase 7; TrEMBL-Plants: tr|A0A0S3SZ08|A0A0S3SZ08_PHAAN Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi3g1v0394300 LjG1.1_chr3 79373601 79388871 -
2 domain predictions
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LotjaGi3g1v0553300.1
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G51460.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O64896|TPPA_ARATH Trehalose-phosphate phosphatase A; TrEMBL-Plants: tr|A0A0B2PVA0|A0A0B2PVA0_GLYSO Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi3g1v0553300 LjG1.1_chr3 97068541 97081470 +
2 domain predictions
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LotjaGi3g1v0553300.2
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G51460.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O64896|TPPA_ARATH Trehalose-phosphate phosphatase A; TrEMBL-Plants: tr|A0A0B2PVA0|A0A0B2PVA0_GLYSO Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi3g1v0553300 LjG1.1_chr3 97068541 97081821 +
2 domain predictions
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LotjaGi3g1v0553300.3
n.a. Trehalose 6-phosphate phosphatase; TAIR: AT5G51460.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O64896|TPPA_ARATH Trehalose-phosphate phosphatase A; TrEMBL-Plants: tr|I1L5Q2|I1L5Q2_SOYBN Trehalose 6-phosphate phosphatase; Found in the gene: LotjaGi3g1v0553300 LjG1.1_chr3 97077206 97079892 +
2 domain predictions
 –