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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023214
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 570 results. Now displaying 1 of 12 with 50 rows per page. This search has taken 5.767s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004229.1
n.a. PREDICTED: phospholipid-transporting ATPase 1-like [Cicer arietinum] gi|502158473|ref|XP_004511165.1| chr0 1478816 1484524 +
3 domain predictions
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Lj0g3v0007959.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 3163414 3166656 -
3 domain predictions
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Lj0g3v0023459.1
n.a. Cat eye syndrome critical region protein [Medicago truncatula] gi|357453997|ref|XP_003597279.1| chr0 9359555 9365136 +
3 domain predictions
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Lj0g3v0023459.2
n.a. Cat eye syndrome critical region protein [Medicago truncatula] gi|357453997|ref|XP_003597279.1| chr0 9359555 9365998 +
3 domain predictions
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Lj0g3v0023589.1
n.a. PREDICTED: cadmium/zinc-transporting ATPase HMA2-like isoform X2 [Cicer arietinum] gi|502085535|ref|XP_004487940.1| chr0 9421236 9435009 +
3 domain predictions
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Lj0g3v0023589.2
n.a. Zn/Cd P(IB)-type ATPase [Medicago truncatula] gi|357449309|ref|XP_003594931.1| chr0 9421236 9435009 +
3 domain predictions
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Lj0g3v0024249.2
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356554722|ref|XP_003545692.1| chr0 9671623 9690715 -
3 domain predictions
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Lj0g3v0041659.1
n.a. PREDICTED: ATPase 8, plasma membrane-type-like isoform X1 [Cicer arietinum] gi|502151321|ref|XP_004508383.1| chr0 13724251 13727315 -
2 domain predictions
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Lj0g3v0042639.1
n.a. PREDICTED: cadmium/zinc-transporting ATPase HMA2-like isoform X2 [Cicer arietinum] gi|502085535|ref|XP_004487940.1| chr0 13958267 13960148 -
3 domain predictions
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Lj0g3v0043909.1
n.a. PREDICTED: phosphoserine phosphatase, chloroplastic-like [Glycine max] gi|356508496|ref|XP_003522992.1| chr0 14457959 14464152 +
3 domain predictions
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Lj0g3v0050429.1
n.a. Calcium-transporting ATPase [Medicago truncatula] gi|357495317|ref|XP_003617947.1| chr0 17189035 17191560 -
3 domain predictions
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Lj0g3v0062889.1
n.a. Phosphorylated carbohydrates phosphatase [Medicago truncatula] gi|357461513|ref|XP_003601038.1| chr0 21196766 21202917 -
4 domain predictions
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Lj0g3v0062889.2
n.a. Phosphorylated carbohydrates phosphatase [Medicago truncatula] gi|357461513|ref|XP_003601038.1| chr0 21199943 21202871 -
2 domain predictions
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Lj0g3v0067579.1
n.a. PREDICTED: ATPase 11, plasma membrane-type-like isoform 1 [Glycine max] gi|356508600|ref|XP_003523043.1| chr0 24009873 24019264 -
2 domain predictions
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Lj0g3v0067579.2
n.a. PREDICTED: ATPase 11, plasma membrane-type-like isoform 1 [Glycine max] gi|356516750|ref|XP_003527056.1| chr0 24013773 24020348 -
2 domain predictions
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Lj0g3v0075159.1
n.a. Zn/Cd P(IB)-type ATPase [Medicago truncatula] gi|357479567|ref|XP_003610069.1| chr0 28466337 28469555 -
3 domain predictions
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Lj0g3v0079909.1
n.a. PREDICTED: acid phosphatase 1-like [Cicer arietinum] gi|502158378|ref|XP_004511128.1| chr0 30878956 30882758 -
3 domain predictions
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Lj0g3v0081409.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|502154799|ref|XP_004509840.1| chr0 31814321 31819651 -
3 domain predictions
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Lj0g3v0092919.1
n.a. CTD small phosphatase-like protein [Medicago truncatula] gi|357492701|ref|XP_003616639.1| chr0 38781355 38783555 -
3 domain predictions
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Lj0g3v0096039.1
n.a. PREDICTED: polynucleotide 3'-phosphatase ZDP-like isoform X1 [Cicer arietinum] gi|502177429|ref|XP_004516081.1| chr0 40448787 40455044 +
3 domain predictions
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Lj0g3v0104529.1
n.a. PREDICTED: phospholipid-transporting ATPase 1-like [Cicer arietinum] gi|502127216|ref|XP_004499606.1| chr0 44759005 44765014 -
3 domain predictions
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Lj0g3v0104629.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr0 44797780 44799686 +
3 domain predictions
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Lj0g3v0116069.1
n.a. ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Theobroma cacao] gi|508710299|gb|EOY02196.1| chr0 51014608 51017898 +
2 domain predictions
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Lj0g3v0116069.2
n.a. ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Theobroma cacao] gi|508710299|gb|EOY02196.1| chr0 51014608 51019916 +
2 domain predictions
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Lj0g3v0125959.1
n.a. Pyridoxal phosphate phosphatase PHOSPHO2 [Medicago truncatula] gi|357520709|ref|XP_003630643.1| chr0 56662699 56664477 -
3 domain predictions
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Lj0g3v0126429.2
n.a. PREDICTED: copper-transporting ATPase RAN1-like isoform X2 [Cicer arietinum] gi|502141831|ref|XP_004504660.1| chr0 56884150 56888752 +
3 domain predictions
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Lj0g3v0133769.1
n.a. PREDICTED: cadmium/zinc-transporting ATPase 3-like [Glycine max] gi|356564834|ref|XP_003550652.1| chr0 61252549 61258969 +
2 domain predictions
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Lj0g3v0139979.1
n.a. PREDICTED: phosphatidate phosphatase LPIN2-like [Glycine max] gi|356570718|ref|XP_003553532.1| chr0 64169306 64173061 +
3 domain predictions
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Lj0g3v0140249.1
n.a. PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356516692|ref|XP_003527027.1| chr0 64406952 64413330 +
3 domain predictions
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Lj0g3v0159069.1
n.a. PREDICTED: phosphomannomutase-like [Cicer arietinum] gi|502105029|ref|XP_004492705.1| chr0 74510961 74514745 +
3 domain predictions
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Lj0g3v0165669.1
n.a. Haloacid dehalogenase-like hydrolase superfamily protein [Theobroma cacao] gi|508703590|gb|EOX95486.1| chr0 78642424 78644775 -
3 domain predictions
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Lj0g3v0169769.1
n.a. Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Theobroma cacao] gi|508715596|gb|EOY07493.1| chr0 81078365 81081522 -
4 domain predictions
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Lj0g3v0193989.1
n.a. PREDICTED: inorganic pyrophosphatase 2-like [Glycine max] gi|356526037|ref|XP_003531626.1| chr0 94668686 94670637 -
3 domain predictions
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Lj0g3v0206009.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max] gi|356498756|ref|XP_003518215.1| chr0 102559018 102562965 -
3 domain predictions
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Lj0g3v0208379.1
n.a. PREDICTED: trehalose-phosphate phosphatase-like [Glycine max] gi|356518491|ref|XP_003527912.1| chr0 104381976 104385264 -
3 domain predictions
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Lj0g3v0212799.1
n.a. Haloacid dehalogenase-like hydrolase superfamily protein [Theobroma cacao] gi|508782861|gb|EOY30117.1| chr0 107392085 107395349 +
3 domain predictions
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Lj0g3v0217649.1
n.a. P-type ATPase [Glycine max] gi|373432581|dbj|BAL46411.1| chr0 110776922 110779299 +
2 domain predictions
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Lj0g3v0251799.1
n.a. PREDICTED: phosphatidylglycerophosphatase GEP4, mitochondrial-like isoform X1 [Cicer arietinum] gi|502134114|ref|XP_004502005.1| chr0 130587366 130591980 +
3 domain predictions
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Lj0g3v0251799.2
n.a. haloacid dehalogenase superfamily protein [Phaseolus vulgaris] gi|396582339|gb|AFN88203.1| chr0 130587366 130591980 +
3 domain predictions
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Lj0g3v0253989.1
n.a. PREDICTED: phospholipid-transporting ATPase 3-like [Glycine max] gi|356570066|ref|XP_003553212.1| chr0 131799620 131806228 -
3 domain predictions
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Lj0g3v0253989.2
n.a. Phospholipid-transporting ATPase [Medicago truncatula] gi|357516581|ref|XP_003628579.1| chr0 131801598 131806228 -
3 domain predictions
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Lj0g3v0256079.1
n.a. PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max] gi|356498756|ref|XP_003518215.1| chr0 132981113 132986572 +
3 domain predictions
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Lj0g3v0258269.1
n.a. Trehalose-phosphate phosphatase [Medicago truncatula] gi|357455863|ref|XP_003598212.1| chr0 134097854 134102058 +
3 domain predictions
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Lj0g3v0259849.1
n.a. sucrose-phosphatase [Medicago truncatula] gi|11127759|gb|AAG31076.1|AF283566_1 chr0 135043824 135044922 -
3 domain predictions
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Lj0g3v0261569.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|356554722|ref|XP_003545692.1| chr0 135534518 135537981 +
3 domain predictions
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Lj0g3v0263249.1
n.a. PREDICTED: LOW QUALITY PROTEIN: glycerol-3-phosphate acyltransferase 6-like [Glycine max] gi|356506768|ref|XP_003522148.1| chr0 136497689 136503108 +
2 domain predictions
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Lj0g3v0264009.1
n.a. PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP]-forming] gi|502123725|ref|XP_004498234.1| chr0 136878207 136882450 +
3 domain predictions
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Lj0g3v0284109.1
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X4 [Cicer arietinum] gi|502170470|ref|XP_004514839.1| chr0 147395499 147397340 -
3 domain predictions
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Lj0g3v0284109.2
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X1 [Cicer arietinum] gi|502170457|ref|XP_004514836.1| chr0 147395535 147397340 -
2 domain predictions
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Lj0g3v0289499.1
n.a. ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 3 [Theobroma cacao] gi|508774997|gb|EOY22253.1| chr0 150337541 150345011 -
3 domain predictions
 –