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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0484500 |
| Transcript ID | LotjaGi1g1v0484500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDT1-like protein; TAIR: AT5G36290.1 Uncharacterized protein family (UPF0016); Swiss-Prot: sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4; TrEMBL-Plants: tr|I3SMN6|I3SMN6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0484500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99793860..99798314) extracted from Lotus japonicus Gifu genome v1.2.
CTATAATGCACTCGAACCCTCAAATCAGCTAGGGTGAGAGAGAATTAGAATTAAGGTTAATTGGAGAGATAATGTGTACT ATCTTGCTCTTGCATATATCTTTTTTCCATAAAAGGTTAAAAAATATATATTTAAGAATGTAATTTTTTTTTTCATTACT TTGATTGGGTTGGAAGCCGGTGCGAGAAGAGAAAGCGCGTTATGAAGCTCTTGTCTGGGTAGTTGCAAAATCTCGCAAAG GCAAAGAATGAATCGTATAATGAATCGTATAAAATGAGTAAACGACTGAAATTACTGTTCGGGGATCTTCCACCACAGGA TCTCTCCATAATTCAGATCCGAATCAAAACTTAACCACTTCTCTCCAAAAACTTTCCCGAGAAAATCCCTATAAACTTTC CCGAGAAAATTTCCTTTTCCCATTCCACTTCAATTTTCTCTCCACCGCCAACAATGGCGCTGCGCTTCAACGATCGCAGA ACCACCGCTCTCGCAATTCTCCTCTGCTTCCTCTTCCACCTCTCGCCGACACTCGCTCAGGTAACTAACCACCCTCTCTC TTCTCCTCCGTCCTCCTCCGCGTTTTCCAGGCGCGAATCGTGGCCGTAACGTGCTTGTTTTTGCATGCGCAGGATTCTCT GGCTCAGATCGGTGGATCTGTGGATCTCGGTCGCCGCGGCAAAGTGAGCTTCCGTTACTTGTTGTTTTATTCGATTGAGA TGCTGAGGAAACTGAATTGAATTGTTAGATACTGGAAATGAGTGTGGTTTTTGTGTGAACAGGTTATGTTGCATCATAAT GCTTCAGTCATTTCTATTGGCTTGGATTCCACTGGTGTTGGACTCTTTGATGCTTTTTTTGCCAGTCTATCAATGATCCT TGTCAGTGAGGTTAGCCTAACGACACCTCCCTATGTCGCATTCGTTGCTAAATTCTGACAATCTATTTATAGCTGATTTT ATTGTAGCAGTGTTGATGCATTTTCTCTTGATTCAACTTGGATTTTGAGAACAATGTGTTTTCTTCGTTTCTATTGCATT ACATGAGCTCTTCTAGAGAGGTTAGGTTGCAAACTGTTAATCGCCGGTAGTAGTAGAGGGCTAGAGGTGTTGATAATTAT AGGTGAGAGAGCAAGAGAAATTTGAGGGGTTAGTGTTGGGAGATGCAACTGGTGTTGATTGAATGAGCTGAAGCATGTGA TCCAAAGCCGATTTGCGGGTTCTATGTTGAATTGGAGGGTTTAGACCACCAATAAAATTAATGTAACTTGTGCACCTCCT ATGGGCAGAATGAAATCAATTGTACCTTTAGGAATTAGCCAGCAATGAGATACCGCACACAAGTACGCACTTTAGGAACA AGATCTTTCTCTGCTTTGCATTTTCTATAAGTAAGGTCGTGGTTGGAATTGTGGAGAAGTGATCCTGGCCATATAATATA TTAGTGAGAGTTGTTTTCACCCATCAGAGCCCTAGGTTAATTGTCTCTGTGCCAAATGTAGCACATTTCCCTATTGGGCT TAAACCCAACAAACATATATACATGGTGATTCTCAAACCTAAAATGGATCACATAACTATATGGGCTTCTAAAGAAAATA TAGCTATCCATTCAACCTATTTCATAGAACTAAATACACCTATCAATAAAAGACTAAATCCAAATATATTCTAACATTAC GTAGACTGGAGAAAGTAACCAACTAGTAACTAATCGTTGACTCTTCAAACTAAACCCAATTAATCTATAACAATTGCTAA CAAAACTATCTAAACTGTTACAAGTAGCCAGTAGGAGAATTGATTTGTTAAGAATGCTTTTTGTTTCTGTTGTATTTACC TCTCTTATATATCTGTGTTTGCCTTTCAACTAATTTTTTTATACATGCTAGATTGGGGATGAGACATTTATAATAGCAGC TCTTATGGCTATGCGTCACCCTAAGTCGATTGTGTTGTCTGGTGCACTCAGTGCCCTGATTATAATGACAGTAAGTCAAC AGCAATCATGTTTTAGTTTTAATGTTCCTTTTTTTTTGTTCTCATCATGGGATGCTTTTAACATGGTAAAATTGTGTTGA AATGGTTTCAGCTCTAACTCTGATTATCAATGTTATCGGGATTGAACTTATTGTGTGTGTCAATTAGGTACTTTCTACAG GACTAGGAAGGATTGTGCCAAATTTGATTTCGAAGAAGCATACAAATAGTGCTGCTACAGGTAAAAGAGTTGGATATATT ATAACTTGTGAAATCAGCAACGAAAAATTTCCATCCATTTTCTTGTGTTTGTGGACGGGGTTTACTTTCATTTTTAAGTT CAATGCTAGTGTAAAATATGAAGCTAAGCCTATCCTTTTTTTGTCATTTACAGTTCTTTATGCTTTCTTTGGGTTACGAT TGCTGTACATTGCGTGGAGATCATCAGATTCAAAAACTTCACAGAAGAAAGAAATGGAAGAAGTATGCTTTTATTGACCC TTCATAGTAAATACTTGTCACACTTTTCAATTCTGTGTATATAGAGCTTTATATATATACACACAGGCATGCTGATGATG TATAATGTATTGCTTCAAGTTCCGTATTCTGCTCTGATGCATGGGTACGTTCATTTGGGCGGCGTACCCGTACCGGGTAC GTACCCTTTTCAAAAAAAAAGGGGGGGTTCCGGGCCAAAACGACGTTGTTTTGGCCATTAAAAAAAAAAAAACAGAACAA ATCGCGTGAAAAGGGAACAGTCTGGCTTCTCAAGGGTTCAGTTCACGAACCACAAGGAAACCAGCGTGCGCCTCCACCGT GCGCCTCCGCCGGCCACCACCTTCCTCTCCAGCGTGCGCCTCCGCCGTCCCTCTCCTCCGTGGTCTCTATCCTGATCCTG TTGTTGCTCATGGTTTCCCAATAACTCTTGCCTTAAGAAAGCATTGATCCTCCTCAAGTTAATCAATTCTTCAGCTTCAG TTTCGCGTTCCTTCTTGACCTGCTCTAATTCATTCAGAAGCTGGCTGTAATCTTCTGATTCAATCTGCAAATAATATTCC ATTTGTTTTTTTTGCATAATTTATTTATATTTAAATATTATGTATAAAAAAATATATATATATATATATCTAACGTACCC GTACCCCTATTTTTTCAAAAATCGCGTACCGCGTACCCATTACCGTACCCGTACCGGGTACCGTACCCGTGCAACACAGG TATTCTGGTAAATGGACTGATGACAGCCTTTATAAATGTTAAAATATACTAAGAGCTAGAGTCTTGACATAGATGTGACT GTTAAGGCTGCTACTTTTCTTCTTTCTATTTTGGTTTTGCTGTTACTCCACCAGGTCACTTTGCCATGGGGAGGGCTCCT CAATTAATTTCTTGTAAAACATGCTGCAATCTGCAGGGGTTATATACTTGATGTATTAGTTGGTTCAGCTTATTCAATGA AAAAAATCTGGTTCATATTTGATACCTGCTAAGAATTTGTTCTTGTTAACTAGGTTGAAGAGAAACTTGAAGGTGGACAA GGAAAAACTTCATTTCGACGGTTCTTTTCAAGATTTTGCACACCAATATTTTTGGAGGCAAGTTATATTTCTGCATAATT TATTCGACTGGAAGATAATAATCACATCTATAATACTTCCTTCTTTTTTATGCAGTCTTTTATTTTAACATTCCTTGCTG AGTGGGGTGATCGCAGCCAGATTGCGACAATTGCAGTAAGAACCTTGATTTCCTCCCCCACCTAGATCTTTGTACATTTT CTGCGTTCATTGTTGATTTTGTCATCAATCTTTGATTTTTGTCTAAGATTTTTCATGATCTTTGATTTCCTTTGACAGCT GGCAACCCACAAAAATGCGCTGGGAGTGGCGGTCGGGGCTACTATAGGACACACCATCTGTACTTCTGTGGCAGTGGTGG GGGGAAGCATGCTGGCATCTAAGATTTCCCAGCGCACAGTGGCCACAGTTGGTGGTTTGCTCTTCCTCGGCTTTTCAGTG TCTTCATACTACTACCCTCCTCTATAATTATTACCGCGTCAATTAATCCTATTCTTAATGTTTTCGTCGACTTGTCATTG TGATCGTTCTACGTTGATCTTTTTTTTTCTTTCTTGATTGTCCTTATAATAGAATTTGTTGTACTTACCCCCTACCCTAG GAATACTAACGGGAACGTAAGGTTTTGAATCCCATTCTTTTCTGTAGAATATTTTGTGTTTATCTCTCACCTTGCACATA GACAGCCGTTATTTTTCATTGTTACCAAAGGGTAAAAGTATATTCCTCCTTTCCACGGTTCATAGTCCATTTAACTATTA CTGTATTTCCTTCTGCATTTGCTCTTGGAACTGCAGATTATGTGTTAGTCCCAATCATGAATGAACTGTACATTTGTGTT GAGGCGTGAGATTTTTTAGCTCATGGATGAAAGTATTGGTTAAATACCATTGGTG
CDS sequence (LotjaGi1g1v0484500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTGCGCTTCAACGATCGCAGAACCACCGCTCTCGCAATTCTCCTCTGCTTCCTCTTCCACCTCTCGCCGACACT CGCTCAGGATTCTCTGGCTCAGATCGGTGGATCTGTGGATCTCGGTCGCCGCGGCAAAGTTATGTTGCATCATAATGCTT CAGTCATTTCTATTGGCTTGGATTCCACTGGTGTTGGACTCTTTGATGCTTTTTTTGCCAGTCTATCAATGATCCTTGTC AGTGAGATTGGGGATGAGACATTTATAATAGCAGCTCTTATGGCTATGCGTCACCCTAAGTCGATTGTGTTGTCTGGTGC ACTCAGTGCCCTGATTATAATGACAGTACTTTCTACAGGACTAGGAAGGATTGTGCCAAATTTGATTTCGAAGAAGCATA CAAATAGTGCTGCTACAGTTCTTTATGCTTTCTTTGGGTTACGATTGCTGTACATTGCGTGGAGATCATCAGATTCAAAA ACTTCACAGAAGAAAGAAATGGAAGAAGTTGAAGAGAAACTTGAAGGTGGACAAGGAAAAACTTCATTTCGACGGTTCTT TTCAAGATTTTGCACACCAATATTTTTGGAGTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGATCGCAGCCAGATTG CGACAATTGCACTGGCAACCCACAAAAATGCGCTGGGAGTGGCGGTCGGGGCTACTATAGGACACACCATCTGTACTTCT GTGGCAGTGGTGGGGGGAAGCATGCTGGCATCTAAGATTTCCCAGCGCACAGTGGCCACAGTTGGTGGTTTGCTCTTCCT CGGCTTTTCAGTGTCTTCATACTACTACCCTCCTCTATAA
Protein sequence (LotjaGi1g1v0484500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRFNDRRTTALAILLCFLFHLSPTLAQDSLAQIGGSVDLGRRGKVMLHHNASVISIGLDSTGVGLFDAFFASLSMILV SEIGDETFIIAALMAMRHPKSIVLSGALSALIIMTVLSTGLGRIVPNLISKKHTNSAATVLYAFFGLRLLYIAWRSSDSK TSQKKEMEEVEEKLEGGQGKTSFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATIGHTICTS VAVVGGSMLASKISQRTVATVGGLLFLGFSVSSYYYPPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| Phobius | 29 | 69 | 41 | - | – | |
| PANTHER | 33 | 278 | 246 | 2.5E-146 | ||
| PANTHER | 33 | 278 | 246 | 2.5E-146 | – | |
| Phobius | 70 | 95 | 26 | - | – | |
| Pfam | 73 | 146 | 74 | 2.5E-18 | ||
| Phobius | 96 | 101 | 6 | - | – | |
| Phobius | 102 | 125 | 24 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 126 | 136 | 11 | - | – | |
| TMHMM | 135 | 154 | 20 | - | – | |
| Phobius | 137 | 154 | 18 | - | – | |
| Phobius | 155 | 185 | 31 | - | – | |
| Coils | 160 | 180 | 21 | - | – | |
| Phobius | 186 | 205 | 20 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Pfam | 197 | 269 | 73 | 2.0E-21 | ||
| Phobius | 206 | 224 | 19 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 225 | 245 | 21 | - | – | |
| Phobius | 246 | 256 | 11 | - | – | |
| Phobius | 257 | 276 | 20 | - | – | |
| TMHMM | 258 | 277 | 20 | - | – | |
| Phobius | 277 | 279 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0484500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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