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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0484800 |
Transcript ID | LotjaGi1g1v0484800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Photosystem I reaction center subunit XI; TAIR: AT4G12800.2 photosystem I subunit l; Swiss-Prot: sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic; TrEMBL-Plants: tr|C6T1C8|C6T1C8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0484800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99815917..99823309) extracted from Lotus japonicus Gifu genome v1.2.
GCCAATGAGATTTGAGGAGCTTCAACAGCCACAACCTTGAACTTTGATTGAACCATGATGAAAGTACTTAGCCACCACGG TCCCTCAATTGAGACACTGTGTGTAGTAGTAGCAACAACTCTTTGTGCTGTGTTGGAATTCACAAAATTAAGGCCATGGC TGCTGCTTCTCCAATGGCTAGTCAGCTCAAGTCCACCTTCACTAGGCCTTCTCTGGTCACACCCAAGGGCCTCTCAGGCT CTTCTCCACTCCACCTATTGCCTTCTAGAAGACAATTCACCTTCACTGTCAAGGCCATTCAATCTGAGAAGGTAGGCCAC TTCATCCATATGTGATATCTTCGCGGATCAGCTTATTTTTCCTCATAATCAATTCTGACACTCAGAACCTACGCATATAA GTTTCTCTCCAAAATTTATTTTGGTTCTATAATAATTATATATATGCTATTAGTTATAACTAGGAAATCATTTCTGCCAT ATCCCATTTGCTCATAGTATGTTTAAATGAACTTATTTTTGCTCGGAATCAATTTTGTACACAGAAGATATTCGCATAAG CTTCTCCATAATTGAGTTTAGTTCTAGAATATATAATTGTAGAAGGATTTTCAGATGTGCTATTAGTTATTACTAGCAAA GTTTTCATTATCTTCTAAACAATGTACTATGTATGAACAAAGTATGAATGACTGTTTTTTTTTTGTTGCCTCATGTTTTC CAACATGCTATGAATCATGGACCATTTTAATTATATGAAGAATGTCAACATAAATTCAGATTTACAACTTCTGTTTGTTG TATTTTTTAATGATTTAAGCTCTCACATATATGACTCATATGAGTCTTAATTAACATTTTTAACATCTATAATCTAGAAA TGGTTTGAAAACACACACCTTATACCATTATGTAGAAATCTATTGCTTGGTTTTATTACAATGTTCAATAAGAAGCCTTT TTTTTTTGTCTTAGCGTCATTAGATTAAAGCCACTAGGACAGCCGAACAGCACTTACGTCATGCAGGATAAAGAGAAACC TATATAAGAAACTTAGTTTATATGTCAAGTCTGATTGAAGGATTTTATAGGATTTCTGTGGCTGTTTCTGTCTTAATATT TTGTTAGGTTGTGATTTTGTGAGCAAACATGCTATGTTTTGTAGAGTTTTATTCTGTAGCATTATGATATTGCTTAGAAT CCCTTACTGACTGGTGTTTTCTTGTTTTTGGCAGCCAACTTACCAAGTGATTCAGCCAATTAATGGTGACCCATTCATTG GAAGCCTTGAAACTCCAGTTACATCAAGCCCCTTGGTTGCATGGTACCTCTCTAACCTTCCAGCATACAGAACTGCTGTG AACCCACTCCTAAGAGGGGTTGAAGTGGGCTTGGCCCACGGGTTCCTGCTTGTGGGCCCATTCGTGAAGGCCGGGCCTCT GAGGAACACCGAATATGCAGGAAGTGCAGGCTCTCTTGCAGCTGCTGGACTTGTGGTGATCCTTAGCCTCTGCCTCACAA TCTATGGAATTTCATCCTTCAATGAAGGGGATCCATCCACTGCACCTTCATTGACCTTGACCGGCCGCAAGAAGGTGCCT GATCAGCTCCAAACAGCAGATGGCTGGGCCAAATTCACTGGGGGGTTCTTCTTTGGAGGCATTTCTGGGGTTACTTGGGC TTACTTCCTCCTCTATGTCCTAGATCTTCCATACTACTTCAAGTGAACAGCTTAACTTTCTGTTTGTATTACTTATTCTC AATGAATGAACAAAGCATGGATTGTGCAATTGAGATGTATGTAAATGCTGTATTTTGTAACTCTCACTTTGTAACAATGT TCAGTCTCCTCTCTGGTTTTGGGCTATCTATCTTTGAATAGAACTTTGGTTTGTTTTGGTAAGCAACTTAAGTAAGTGCT CATAACAATAAGTGTTCGTCGTAGAAGCTGTTATTCGTAAGCTAATTTGATAAGCTTATTGAAATAAGTTCAAAATATGT TTTAGGTATGTATAAGCACTTATTCATAAACTATTTTGAGAACATTATGAAAATAAGTGATAAGATTAAACCTCCTTTGA TCCAAGTTTATCGCCGGAAAAAAAAGAATTTCAGGTCTGGAACCACCATGGGGGGTGGCGCAGCCACTACTGTGGCCATG GAGACTGCTGAGCAGCCAAAACAGCAAGGAGAGAGGGGAAATACGAATTTGGCAGATGGATAGGGGCAGTTACCAGTCTG TAGTTATTAGGAGTTAGCAGTTATTATGTGTGTATGTCAGTTTGAATTCAAAATAGAAACTGCACTATGCAGTTGTATAA ATAATAGATGTAGCCTATTAGATGATCATCCAGGAAATTATAAGTTTGGTAGTATGGAGAGAACAAGCTCTCGAACTCCT GCTGTATTGTACTATTCCCAGTAGAGATTCTTCATCTCTGCAGTATCAATAATAATTATCCATTATTCTATTCCCCTATC TTATCATTTTGGTATCAGAGCACCATCCAGGTGCTGTGGTACTTAAGTGGTTCACTTTATAAATGGGAAAAACTCGTTCT GAAGCCAGTCAAGATCCAATGGAGCGGATGCAAGAAATTATGGAAATGTTGCAGATTGATCGTCAACAAGCACAGGCTGA TCGTCAACAAGCACAGATTGACCGTCAACAAACTGATCAACGAATTCAACGTTTGGAAAATATGATGAAGACGTTCATGC ATCGGGACGACCTTGGCTCTCAAAGAGACAATCATGAACAGAGCATTAAGCGCCCAGGACAGGAAAAAGAGTCTAACTGT GATAACACTTCTGCACGTTGGCGGAAGTTGGAGGTTCCAGTTTTTGATGGTGTTGCTGATGCCTATGGTTGGGTTCATAA GTTGGAAAGGTTCTTCCAAATTCGTGGAGTTCCAGAGGAGGGGAGATTGCAGGCGGTTCTGGTGGCACTGGATGGAAAAG CTCTATCATGGTTTCAATGGTGGGAAGGTTGTCATCCTCACGCAGACTGGGACACTTTTAAGTTGGCAATTCTGAAGAGG TTCCAAGTTTCAAGTACTCTCAATCCCTTTGCTGCTTTACTAGCCCTTAAGCAAGAAGATTCGGTGGCGGAATTTGTGGA ACAATTTGAGAAATTTGCCGGCATGTTGAAAGACATTGATGAAACACACTTAATGGATATCTTTGTGAATGGTTTGAAGG AGGACATAGGTGCAGAAATTAAACTTTATGAACCAACAACCTTATCCATCATGGTCCAAAAGGTTTTAATGATTGAGCAG AAAAATCTTGCAGTTAGTAAGGTTCATCCAAATTCCACTTCTGGTTCAAGGTTCAGTAATTCTTATAAGTCTCCATCCAT TTCTCGAACTGTCACAGTTGATACTACACAGAAGAGTGGAGGCAAAAGTTACACACCATCTTCATCTTATTCTGGTAGTG TCTCAGTGGATAAACCATTTCAAAGAAATCGACCGGGTAATTACCGTAGACTTTCTGATGCTGATTACCAGGAGAAGATC CGGAAAGGAGAATGTTTTCGCTGTGATGAAAAATTTGGGCCTAACCATGTGTGCAAGAACAAACAATTTCGAGTTATGCT GATGGAAGAGACTGGCGATTCTGAACCAGAAGATGATCCAGATTGTCACCCCGAAACGGAACCTGTCCCACATTTATCCC TGAATAGTATTGTTGGATTCACTTCCAGAAGGTCTTTCAAGGTTTGGGGAACTATTGAAGATCACAAAGTTGTGGTGTTA GTTGATTGTGGAGCAACTCATAATTTCATTTCCAAGGCGTTAGTACAGGAATTGCACTTGAAGGTTGAGGATACTCCATC TTATGTAGTTGAAGTAGGGGATGGTCATAAGATACCATGCAAGGGTGTTTGTAAGGACGTGTCTTTGCTGTTACACAATG TGCCGGTCAATCAGCAATTTTATTTGTTTGGCCTTGGCGGAGTGGACATTGTATTGGGCCTAGAATGGTTAGCAAGTCTT GGTGACATTAGAGCTAACTTTGAACAGTTGACTTTGCGGTTTACTATGAATGGCCAGAAGTTATCACTCCAAGGGGATCC TGAATTATGCAAGAAGGATGCTTCTTTAAATTCCCTACTCAAGGCTTTGCAACATGGTGAGGGATTTCTCATTGATTTTC AACAAATTCGAGCGGAAACAGATTGGAGGGCTAATGTTCCAGCAGATTTAGTTTCCATTCTCCACCAATTTCCTTCCATC TTTGAACCACCGGAAGGATTACCACCTCACCGTCGGCAAGATCATGCGATTCATCTCAAGGAAGGGGCGCAAATTCCTAA CTTAAGACCTTATAGATATCCTCATTACCAGAAAAACGAAATTGAGAAATTGGTTGCTGAAATGTTAGATGCCGGCATTA TTCGTCCATCTACAAGTCCCTTCTCCAGCCCCATAATTCTGGTTCGAAAGAAAGATGGTAGTTGGCGGTTTTGTGTTGAT TACCGGGCCTTAAACAAGATCATCGTGCCAGACAAATTTCCAATTCCAGTCATTGATGAATTGTTGGATGAAATAGGAGG GGCACAGATCTTTTCAAAGCTGGATTTGCGTTCCGGTTATCACCAAATCAGAATGAAGGAAGGTGACATTGAAAAAACTG CATTCAGAACTCATGAAGGTCATTACGAATTTCTGGTACTTCCTTTTGGTCTCACTAATGCACCCTCTTCTTTCCAATCT TTAATGAATGAAGTTTTGAGGCCCCTTCTCCGCAAGTTTGTATTAGTTTTCTTCGATGATATTTTGATATATAGCCTCTC CATGGAAGATCATATCCAACATTTGCACACTGTTTTATCTCTACTACAACAACATGATTTGAAAGTCAATGGGAAGAAAT GCACTTTTGGCCAAGAGACTTTGGAGTATTTGGGTCACATCATTTCTGCAGGTGGAGTTTCTGCTGATCCAAAGAAATTA GAGGCTATGTGGTTGTGGCCTACTCCCAAGGACATCAAAAGTTTAAGGGGTTTTCTTGGGCTAACAGGTTATTACCACCG TTTTGTACAGAATTATGGGAAGATTGCGAAACCTTTGACTAATTTATTGAAGAAAGATGCCTTTCAATGGAGTTCTGATG CTCATGCTGCTTTTGAACAATTAAAGAATGCCATGACTACTCTTCCTATGCTGGCTGTTCCTGATTTTACCAAGCCTTTT GTTTTAGAGACTGACGCTTCAGGTACAGGTTTGGGTGCTGTTTTATTGCAGGAAGGTCGCCCTTTGGATTTTTGGAGTAC AACTTTATCTGATCGGAATCAAAGGAAATCAGTCTATGATCGCGAACTGATGGCGGTTGTCAAAGCTGTCCAGAAATGGC GCCATTACTTGTTGGGTCATCATTTTATAATCCGAACTGATCAGAAAAGTTTGAAGTTTTTGGCAGATCAACGCATGTTG GGTGAAGAACAATTCAAGTGGGTTTCTAAGTTGGCTGGGTTTGACTTTGATATTCAGTACAAACCGGGTAAAGACAATTC TGCTGCTGATGCCTTATCCCGGCGGAGTTCTTATTGCGCCATTTCTATCTTACAAATTCATGATTTTGAAGAATGGGTGG AAGAAGTCAATAAAGATGACAAGTTGCAGAAAATTATACAAGACTTGATTCTGGACCCTACTTCTCATTCCGGATATGTC TTGCGTGATCAGAAACTATTCTTTAAAGGTAGATTGGTTTTATCAAAGACTTCCTCCCGTATACCAGTCATCTTGAAAGA GTTTCATTCTTCATTGATGGGAGGGCATTCCGGAATCTTCAGAACATACAAAAGGGTGGCCAACTTGGTTTATTGGGACG GCATGAAATCTGACATCAAGAACTATGTGGCTGCTTGCGATGTTTGCCAAAGGAACAAAAGTGATACTTTAACTCCGGCT GGCTTATTGCAACCTTTACCCGTTCCTACTCAAGTTTGGACAGATATTTCCATGGATTTTGTCACTGGTTTACCTAAATC CATGGGGAAAGACACCATTCTGGTAGTAGTTGATCGTCTTACAAAATATGCACATTTCTTGGCCTTGGGTCATCCCTATA CAGCTACTGAGGTTGCTGCAGTATTCCTTCAAGAAATTGTCAGGCTCCATGGTTTTCCTTCCTCCATTGTATCTGATCGA GATCCCCTTTTCTTGAGCAATTTTTGGAAGGCACTTTTCCGAGCAGCAGGTACTCAATTGAAATTTAGTTCTGCTTATCA TCCCCAAACTGATGGCCAAACCGAAGTTGTCAACCGGTGCTTGGAGGTGTACTTGCGCTGTCTTACAGGTTCCAAACCCA AAAAATGGGTTTCTTGTCTTCCATGGGCTGAATTCTGGTTTAATACTAATTATAATGCTTCCAGCAAAATGTCACCTTTT CAAGCCTTGTATGGGCAGGATCCTCCTCTTCTTTTCAAAGGTTCGACCATTCCTTCCAAGTTAGATGAGGTTAATAAACT TTCTAAGGACCGGGACGAATTGTTGGCAGATTTGCGAGACAACTTGCTTAAGTCTCAGGATATCATGCGTACATATGCCA ACAAACACAGAAGACAAGTGGAATTTGAAGCTGGCGATTGGGTCTTCTTGAAGTTGCAGCCTTATAGAAGGCGATCTTTG GCTCAACGAGTTAATCAGAAACTCAGTCCACGATTCTATGGGCCATTCCAAGTGCTAGCCAAAGTTGGAGCTGTAGCTTA TAAATTGGACCTTCCTTCCCATAGCAGAATTCATCCGGTGTTCCATGTCTCTCTTCTTAAGAAAGCCATTGGCGATTCGT TTCAATCTCAGCCCTTGCCTCCCATGCTATCTGAAGATCACGAGTTGCAAGTTTATCCCGAATCGGTTCTCAATGTTCGT GAAGATTCTCCTGGTAATGTTGAGGTTCTGATTTCCTGGCAGAATCTTCCTTCTTGTGAGAATAGTTGGGAATCGGTGGC CCGCATTCATGAAGCCTTTCCAGACTTTCACCTTGAGGACAAGGTGAATCTTCAAGGGGGGGGGGGGGTATTGATAAGAT TAAACCTCCTTTGATCCAAGTTTATCGCCGGAAAAAAAAGAATTTCAGGTCTGGAACCACCATGGGGGGTGGCGCAGCCA CTACTGTGGCCATGGAGACTGCTGAGCAGCCAAAACAGCAAGGAGAGAGGGGAAATACGAATTTGGCATATGGATAGGGG CAGTTACCAGTCTGTAGTTATTAGGAGTTAGCAGTTATTATGTGTGTATGTCAGTTTGAATTCAAAATAGAAACTGCACT ATGCAGTTGTATAAATAATAGATGTAGCCTATTAGATGATCATCCAGGAAATTATAAGTTTGGTAGTATGGAGAGAACAG GCTCTCGAACTCCTGCTGTATTGTACTATTCCC
CDS sequence (LotjaGi1g1v0484800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTGCTTCTCCAATGGCTAGTCAGCTCAAGTCCACCTTCACTAGGCCTTCTCTGGTCACACCCAAGGGCCTCTC AGGCTCTTCTCCACTCCACCTATTGCCTTCTAGAAGACAATTCACCTTCACTGTCAAGGCCATTCAATCTGAGAAGCCAA CTTACCAAGTGATTCAGCCAATTAATGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCCTTGGTT GCATGGTACCTCTCTAACCTTCCAGCATACAGAACTGCTGTGAACCCACTCCTAAGAGGGGTTGAAGTGGGCTTGGCCCA CGGGTTCCTGCTTGTGGGCCCATTCGTGAAGGCCGGGCCTCTGAGGAACACCGAATATGCAGGAAGTGCAGGCTCTCTTG CAGCTGCTGGACTTGTGGTGATCCTTAGCCTCTGCCTCACAATCTATGGAATTTCATCCTTCAATGAAGGGGATCCATCC ACTGCACCTTCATTGACCTTGACCGGCCGCAAGAAGGTGCCTGATCAGCTCCAAACAGCAGATGGCTGGGCCAAATTCAC TGGGGGGTTCTTCTTTGGAGGCATTTCTGGGGTTACTTGGGCTTACTTCCTCCTCTATGTCCTAGATCTTCCATACTACT TCAAGTGA
Protein sequence (LotjaGi1g1v0484800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAASPMASQLKSTFTRPSLVTPKGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQPINGDPFIGSLETPVTSSPLV AWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPS TAPSLTLTGRKKVPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 129 | 129 | - | – | |
PANTHER | 2 | 215 | 214 | 4.8E-118 | – | |
PANTHER | 2 | 215 | 214 | 4.8E-118 | ||
Gene3D | 52 | 215 | 164 | 1.2E-76 | ||
Pfam | 57 | 209 | 153 | 5.4E-58 | ||
SUPERFAMILY | 58 | 214 | 157 | 3.4E-55 | ||
TMHMM | 129 | 151 | 23 | - | – | |
Phobius | 130 | 151 | 22 | - | – | |
Phobius | 152 | 189 | 38 | - | – | |
TMHMM | 186 | 208 | 23 | - | – | |
Phobius | 190 | 208 | 19 | - | – | |
Phobius | 209 | 215 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
Cellular component | Photosystem I reaction center | A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. | ||
Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of LotjaGi1g1v0484800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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