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LotjaGi1g1v0484800.2

Overview

Field Value
Gene ID LotjaGi1g1v0484800
Transcript ID LotjaGi1g1v0484800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Photosystem I reaction center subunit XI; TAIR: AT4G12800.2 photosystem I subunit l; Swiss-Prot: sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplastic; TrEMBL-Plants: tr|C6T1C8|C6T1C8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0484800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99815917..99823309) extracted from Lotus japonicus Gifu genome v1.2.

GCCAATGAGATTTGAGGAGCTTCAACAGCCACAACCTTGAACTTTGATTGAACCATGATGAAAGTACTTAGCCACCACGG TCCCTCAATTGAGACACTGTGTGTAGTAGTAGCAACAACTCTTTGTGCTGTGTTGGAATTCACAAAATTAAGGCCATGGC TGCTGCTTCTCCAATGGCTAGTCAGCTCAAGTCCACCTTCACTAGGCCTTCTCTGGTCACACCCAAGGGCCTCTCAGGCT CTTCTCCACTCCACCTATTGCCTTCTAGAAGACAATTCACCTTCACTGTCAAGGCCATTCAATCTGAGAAGGTAGGCCAC TTCATCCATATGTGATATCTTCGCGGATCAGCTTATTTTTCCTCATAATCAATTCTGACACTCAGAACCTACGCATATAA GTTTCTCTCCAAAATTTATTTTGGTTCTATAATAATTATATATATGCTATTAGTTATAACTAGGAAATCATTTCTGCCAT ATCCCATTTGCTCATAGTATGTTTAAATGAACTTATTTTTGCTCGGAATCAATTTTGTACACAGAAGATATTCGCATAAG CTTCTCCATAATTGAGTTTAGTTCTAGAATATATAATTGTAGAAGGATTTTCAGATGTGCTATTAGTTATTACTAGCAAA GTTTTCATTATCTTCTAAACAATGTACTATGTATGAACAAAGTATGAATGACTGTTTTTTTTTTGTTGCCTCATGTTTTC CAACATGCTATGAATCATGGACCATTTTAATTATATGAAGAATGTCAACATAAATTCAGATTTACAACTTCTGTTTGTTG TATTTTTTAATGATTTAAGCTCTCACATATATGACTCATATGAGTCTTAATTAACATTTTTAACATCTATAATCTAGAAA TGGTTTGAAAACACACACCTTATACCATTATGTAGAAATCTATTGCTTGGTTTTATTACAATGTTCAATAAGAAGCCTTT TTTTTTTGTCTTAGCGTCATTAGATTAAAGCCACTAGGACAGCCGAACAGCACTTACGTCATGCAGGATAAAGAGAAACC TATATAAGAAACTTAGTTTATATGTCAAGTCTGATTGAAGGATTTTATAGGATTTCTGTGGCTGTTTCTGTCTTAATATT TTGTTAGGTTGTGATTTTGTGAGCAAACATGCTATGTTTTGTAGAGTTTTATTCTGTAGCATTATGATATTGCTTAGAAT CCCTTACTGACTGGTGTTTTCTTGTTTTTGGCAGCCAACTTACCAAGTGATTCAGCCAATTAATGGTGACCCATTCATTG GAAGCCTTGAAACTCCAGTTACATCAAGCCCCTTGGTTGCATGGTACCTCTCTAACCTTCCAGCATACAGAACTGCTGTG AACCCACTCCTAAGAGGGGTTGAAGTGGGCTTGGCCCACGGGTTCCTGCTTGTGGGCCCATTCGTGAAGGCCGGGCCTCT GAGGAACACCGAATATGCAGGAAGTGCAGGCTCTCTTGCAGCTGCTGGACTTGTGGTGATCCTTAGCCTCTGCCTCACAA TCTATGGAATTTCATCCTTCAATGAAGGGGATCCATCCACTGCACCTTCATTGACCTTGACCGGCCGCAAGAAGGTGCCT GATCAGCTCCAAACAGCAGATGGCTGGGCCAAATTCACTGGGGGGTTCTTCTTTGGAGGCATTTCTGGGGTTACTTGGGC TTACTTCCTCCTCTATGTCCTAGATCTTCCATACTACTTCAAGTGAACAGCTTAACTTTCTGTTTGTATTACTTATTCTC AATGAATGAACAAAGCATGGATTGTGCAATTGAGATGTATGTAAATGCTGTATTTTGTAACTCTCACTTTGTAACAATGT TCAGTCTCCTCTCTGGTTTTGGGCTATCTATCTTTGAATAGAACTTTGGTTTGTTTTGGTAAGCAACTTAAGTAAGTGCT CATAACAATAAGTGTTCGTCGTAGAAGCTGTTATTCGTAAGCTAATTTGATAAGCTTATTGAAATAAGTTCAAAATATGT TTTAGGTATGTATAAGCACTTATTCATAAACTATTTTGAGAACATTATGAAAATAAGTGATAAGATTAAACCTCCTTTGA TCCAAGTTTATCGCCGGAAAAAAAAGAATTTCAGGTCTGGAACCACCATGGGGGGTGGCGCAGCCACTACTGTGGCCATG GAGACTGCTGAGCAGCCAAAACAGCAAGGAGAGAGGGGAAATACGAATTTGGCAGATGGATAGGGGCAGTTACCAGTCTG TAGTTATTAGGAGTTAGCAGTTATTATGTGTGTATGTCAGTTTGAATTCAAAATAGAAACTGCACTATGCAGTTGTATAA ATAATAGATGTAGCCTATTAGATGATCATCCAGGAAATTATAAGTTTGGTAGTATGGAGAGAACAAGCTCTCGAACTCCT GCTGTATTGTACTATTCCCAGTAGAGATTCTTCATCTCTGCAGTATCAATAATAATTATCCATTATTCTATTCCCCTATC TTATCATTTTGGTATCAGAGCACCATCCAGGTGCTGTGGTACTTAAGTGGTTCACTTTATAAATGGGAAAAACTCGTTCT GAAGCCAGTCAAGATCCAATGGAGCGGATGCAAGAAATTATGGAAATGTTGCAGATTGATCGTCAACAAGCACAGGCTGA TCGTCAACAAGCACAGATTGACCGTCAACAAACTGATCAACGAATTCAACGTTTGGAAAATATGATGAAGACGTTCATGC ATCGGGACGACCTTGGCTCTCAAAGAGACAATCATGAACAGAGCATTAAGCGCCCAGGACAGGAAAAAGAGTCTAACTGT GATAACACTTCTGCACGTTGGCGGAAGTTGGAGGTTCCAGTTTTTGATGGTGTTGCTGATGCCTATGGTTGGGTTCATAA GTTGGAAAGGTTCTTCCAAATTCGTGGAGTTCCAGAGGAGGGGAGATTGCAGGCGGTTCTGGTGGCACTGGATGGAAAAG CTCTATCATGGTTTCAATGGTGGGAAGGTTGTCATCCTCACGCAGACTGGGACACTTTTAAGTTGGCAATTCTGAAGAGG TTCCAAGTTTCAAGTACTCTCAATCCCTTTGCTGCTTTACTAGCCCTTAAGCAAGAAGATTCGGTGGCGGAATTTGTGGA ACAATTTGAGAAATTTGCCGGCATGTTGAAAGACATTGATGAAACACACTTAATGGATATCTTTGTGAATGGTTTGAAGG AGGACATAGGTGCAGAAATTAAACTTTATGAACCAACAACCTTATCCATCATGGTCCAAAAGGTTTTAATGATTGAGCAG AAAAATCTTGCAGTTAGTAAGGTTCATCCAAATTCCACTTCTGGTTCAAGGTTCAGTAATTCTTATAAGTCTCCATCCAT TTCTCGAACTGTCACAGTTGATACTACACAGAAGAGTGGAGGCAAAAGTTACACACCATCTTCATCTTATTCTGGTAGTG TCTCAGTGGATAAACCATTTCAAAGAAATCGACCGGGTAATTACCGTAGACTTTCTGATGCTGATTACCAGGAGAAGATC CGGAAAGGAGAATGTTTTCGCTGTGATGAAAAATTTGGGCCTAACCATGTGTGCAAGAACAAACAATTTCGAGTTATGCT GATGGAAGAGACTGGCGATTCTGAACCAGAAGATGATCCAGATTGTCACCCCGAAACGGAACCTGTCCCACATTTATCCC TGAATAGTATTGTTGGATTCACTTCCAGAAGGTCTTTCAAGGTTTGGGGAACTATTGAAGATCACAAAGTTGTGGTGTTA GTTGATTGTGGAGCAACTCATAATTTCATTTCCAAGGCGTTAGTACAGGAATTGCACTTGAAGGTTGAGGATACTCCATC TTATGTAGTTGAAGTAGGGGATGGTCATAAGATACCATGCAAGGGTGTTTGTAAGGACGTGTCTTTGCTGTTACACAATG TGCCGGTCAATCAGCAATTTTATTTGTTTGGCCTTGGCGGAGTGGACATTGTATTGGGCCTAGAATGGTTAGCAAGTCTT GGTGACATTAGAGCTAACTTTGAACAGTTGACTTTGCGGTTTACTATGAATGGCCAGAAGTTATCACTCCAAGGGGATCC TGAATTATGCAAGAAGGATGCTTCTTTAAATTCCCTACTCAAGGCTTTGCAACATGGTGAGGGATTTCTCATTGATTTTC AACAAATTCGAGCGGAAACAGATTGGAGGGCTAATGTTCCAGCAGATTTAGTTTCCATTCTCCACCAATTTCCTTCCATC TTTGAACCACCGGAAGGATTACCACCTCACCGTCGGCAAGATCATGCGATTCATCTCAAGGAAGGGGCGCAAATTCCTAA CTTAAGACCTTATAGATATCCTCATTACCAGAAAAACGAAATTGAGAAATTGGTTGCTGAAATGTTAGATGCCGGCATTA TTCGTCCATCTACAAGTCCCTTCTCCAGCCCCATAATTCTGGTTCGAAAGAAAGATGGTAGTTGGCGGTTTTGTGTTGAT TACCGGGCCTTAAACAAGATCATCGTGCCAGACAAATTTCCAATTCCAGTCATTGATGAATTGTTGGATGAAATAGGAGG GGCACAGATCTTTTCAAAGCTGGATTTGCGTTCCGGTTATCACCAAATCAGAATGAAGGAAGGTGACATTGAAAAAACTG CATTCAGAACTCATGAAGGTCATTACGAATTTCTGGTACTTCCTTTTGGTCTCACTAATGCACCCTCTTCTTTCCAATCT TTAATGAATGAAGTTTTGAGGCCCCTTCTCCGCAAGTTTGTATTAGTTTTCTTCGATGATATTTTGATATATAGCCTCTC CATGGAAGATCATATCCAACATTTGCACACTGTTTTATCTCTACTACAACAACATGATTTGAAAGTCAATGGGAAGAAAT GCACTTTTGGCCAAGAGACTTTGGAGTATTTGGGTCACATCATTTCTGCAGGTGGAGTTTCTGCTGATCCAAAGAAATTA GAGGCTATGTGGTTGTGGCCTACTCCCAAGGACATCAAAAGTTTAAGGGGTTTTCTTGGGCTAACAGGTTATTACCACCG TTTTGTACAGAATTATGGGAAGATTGCGAAACCTTTGACTAATTTATTGAAGAAAGATGCCTTTCAATGGAGTTCTGATG CTCATGCTGCTTTTGAACAATTAAAGAATGCCATGACTACTCTTCCTATGCTGGCTGTTCCTGATTTTACCAAGCCTTTT GTTTTAGAGACTGACGCTTCAGGTACAGGTTTGGGTGCTGTTTTATTGCAGGAAGGTCGCCCTTTGGATTTTTGGAGTAC AACTTTATCTGATCGGAATCAAAGGAAATCAGTCTATGATCGCGAACTGATGGCGGTTGTCAAAGCTGTCCAGAAATGGC GCCATTACTTGTTGGGTCATCATTTTATAATCCGAACTGATCAGAAAAGTTTGAAGTTTTTGGCAGATCAACGCATGTTG GGTGAAGAACAATTCAAGTGGGTTTCTAAGTTGGCTGGGTTTGACTTTGATATTCAGTACAAACCGGGTAAAGACAATTC TGCTGCTGATGCCTTATCCCGGCGGAGTTCTTATTGCGCCATTTCTATCTTACAAATTCATGATTTTGAAGAATGGGTGG AAGAAGTCAATAAAGATGACAAGTTGCAGAAAATTATACAAGACTTGATTCTGGACCCTACTTCTCATTCCGGATATGTC TTGCGTGATCAGAAACTATTCTTTAAAGGTAGATTGGTTTTATCAAAGACTTCCTCCCGTATACCAGTCATCTTGAAAGA GTTTCATTCTTCATTGATGGGAGGGCATTCCGGAATCTTCAGAACATACAAAAGGGTGGCCAACTTGGTTTATTGGGACG GCATGAAATCTGACATCAAGAACTATGTGGCTGCTTGCGATGTTTGCCAAAGGAACAAAAGTGATACTTTAACTCCGGCT GGCTTATTGCAACCTTTACCCGTTCCTACTCAAGTTTGGACAGATATTTCCATGGATTTTGTCACTGGTTTACCTAAATC CATGGGGAAAGACACCATTCTGGTAGTAGTTGATCGTCTTACAAAATATGCACATTTCTTGGCCTTGGGTCATCCCTATA CAGCTACTGAGGTTGCTGCAGTATTCCTTCAAGAAATTGTCAGGCTCCATGGTTTTCCTTCCTCCATTGTATCTGATCGA GATCCCCTTTTCTTGAGCAATTTTTGGAAGGCACTTTTCCGAGCAGCAGGTACTCAATTGAAATTTAGTTCTGCTTATCA TCCCCAAACTGATGGCCAAACCGAAGTTGTCAACCGGTGCTTGGAGGTGTACTTGCGCTGTCTTACAGGTTCCAAACCCA AAAAATGGGTTTCTTGTCTTCCATGGGCTGAATTCTGGTTTAATACTAATTATAATGCTTCCAGCAAAATGTCACCTTTT CAAGCCTTGTATGGGCAGGATCCTCCTCTTCTTTTCAAAGGTTCGACCATTCCTTCCAAGTTAGATGAGGTTAATAAACT TTCTAAGGACCGGGACGAATTGTTGGCAGATTTGCGAGACAACTTGCTTAAGTCTCAGGATATCATGCGTACATATGCCA ACAAACACAGAAGACAAGTGGAATTTGAAGCTGGCGATTGGGTCTTCTTGAAGTTGCAGCCTTATAGAAGGCGATCTTTG GCTCAACGAGTTAATCAGAAACTCAGTCCACGATTCTATGGGCCATTCCAAGTGCTAGCCAAAGTTGGAGCTGTAGCTTA TAAATTGGACCTTCCTTCCCATAGCAGAATTCATCCGGTGTTCCATGTCTCTCTTCTTAAGAAAGCCATTGGCGATTCGT TTCAATCTCAGCCCTTGCCTCCCATGCTATCTGAAGATCACGAGTTGCAAGTTTATCCCGAATCGGTTCTCAATGTTCGT GAAGATTCTCCTGGTAATGTTGAGGTTCTGATTTCCTGGCAGAATCTTCCTTCTTGTGAGAATAGTTGGGAATCGGTGGC CCGCATTCATGAAGCCTTTCCAGACTTTCACCTTGAGGACAAGGTGAATCTTCAAGGGGGGGGGGGGGTATTGATAAGAT TAAACCTCCTTTGATCCAAGTTTATCGCCGGAAAAAAAAGAATTTCAGGTCTGGAACCACCATGGGGGGTGGCGCAGCCA CTACTGTGGCCATGGAGACTGCTGAGCAGCCAAAACAGCAAGGAGAGAGGGGAAATACGAATTTGGCATATGGATAGGGG CAGTTACCAGTCTGTAGTTATTAGGAGTTAGCAGTTATTATGTGTGTATGTCAGTTTGAATTCAAAATAGAAACTGCACT ATGCAGTTGTATAAATAATAGATGTAGCCTATTAGATGATCATCCAGGAAATTATAAGTTTGGTAGTATGGAGAGAACAG GCTCTCGAACTCCTGCTGTATTGTACTATTCCC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0484800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCTGCTTCTCCAATGGCTAGTCAGCTCAAGTCCACCTTCACTAGGCCTTCTCTGGTCACACCCAAGGGCCTCTC AGGCTCTTCTCCACTCCACCTATTGCCTTCTAGAAGACAATTCACCTTCACTGTCAAGGCCATTCAATCTGAGAAGCCAA CTTACCAAGTGATTCAGCCAATTAATGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCCTTGGTT GCATGGTACCTCTCTAACCTTCCAGCATACAGAACTGCTGTGAACCCACTCCTAAGAGGGGTTGAAGTGGGCTTGGCCCA CGGGTTCCTGCTTGTGGGCCCATTCGTGAAGGCCGGGCCTCTGAGGAACACCGAATATGCAGGAAGTGCAGGCTCTCTTG CAGCTGCTGGACTTGTGGTGATCCTTAGCCTCTGCCTCACAATCTATGGAATTTCATCCTTCAATGAAGGGGATCCATCC ACTGCACCTTCATTGACCTTGACCGGCCGCAAGAAGGTGCCTGATCAGCTCCAAACAGCAGATGGCTGGGCCAAATTCAC TGGGGGGTTCTTCTTTGGAGGCATTTCTGGGGTTACTTGGGCTTACTTCCTCCTCTATGTCCTAGATCTTCCATACTACT TCAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0484800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAASPMASQLKSTFTRPSLVTPKGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQPINGDPFIGSLETPVTSSPLV AWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPS TAPSLTLTGRKKVPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 129 129 - –
PANTHER
PTHR34803:SF2
2 215 214 4.8E-118 –
PANTHER
PTHR34803
2 215 214 4.8E-118
IPR022980
Gene3D
G3DSA:1.20.1240.10
52 215 164 1.2E-76
IPR036592
Pfam
PF02605
57 209 153 5.4E-58
IPR003757
SUPERFAMILY
SSF81568
58 214 157 3.4E-55
IPR036592
TMHMM
TMhelix
129 151 23 - –
Phobius
TRANSMEMBRANE
130 151 22 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
152 189 38 - –
TMHMM
TMhelix
186 208 23 - –
Phobius
TRANSMEMBRANE
190 208 19 - –
Phobius
CYTOPLASMIC_DOMAIN
209 215 7 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009522
Cellular component Photosystem I A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).
Subterm of
GO:0009538
Cellular component Photosystem I reaction center A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.
Subterm of
Part of
GO:0015979
Biological process Photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0484800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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