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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0511000 |
Transcript ID | LotjaGi1g1v0511000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT5G39250.1 F-box family protein; Swiss-Prot: sp|Q9FL82|FB270_ARATH F-box protein At5g39250; TrEMBL-Plants: tr|A0A151TCF4|A0A151TCF4_CAJCA F-box protein family; Found in the gene: LotjaGi1g1v0511000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103119658..103123393) extracted from Lotus japonicus Gifu genome v1.2.
CAGAATCCAAGAGGAAAGAAAAAACCTTGGTCAAATCACCACAAACCACAAGCAAGATCTAACCAAAGAACAAATCACCC AAGACAAAGCACTAATCCCACTCGGAATCTCATATAACCTTAGATCCACAACCAGTACCTCATGCACCGAGGTCTCAGAG TCCAATTCAATTAAAGCTGCAAGTTTCCAACATCATTTTTCTCTTTTCCTCTTAAGATATTTTCTTTGTTCGACCTCGCC CTTGGCGCACCACCTCCTCAACAGCACTCAAAGGCTCTTAATTTTTTTTGGTGAATAGTATTAAATTAAATAAATACGGG AATAAAAACATAAATATTATTATTTTCAATCTATTTTCATAGAAAACTAAAATATTACACTGTTAGTGCATTTCCATTAA TCTCAAAATATTAAAGCAAATATCATCACAATACTTTGTCGTTTACCTAAGTCTTTCATTTCATTTTCAGTCGATTACTT CTATTTCCCGTTTTCTTTCTCTCCTTTTCGATTCTACTTTGACGGCGAACAACTCTCTCTCTCTCTCTCTCTCTAATCAT GATTTAGGGTTTCATCTTACCAATTCCACCCCCAAATCAATCAACGACCTATGCCAAATCTCACCGATCTCCATCACGGT TATCACTCTCTCTCTCTCTCTCTCTCTCTCTCACAAATTTTGTGTTCTTTCACATGTTGATTTCAATTTGGGTTTTTTTT TTATCCTTCTCTTTCAGATTATTATATTGATCCATTGATCATGTTGTTAATCCCCAACACCCTGCCCAGTATTTATTTCT GTTTGATTGATCCTGGTTGAAGCATGTAAATTCGAAACAGATAGAAAAGGTTGTTTTTTTGTTGTTGCATGTTGGTGAAT TTGAGTCAAGTGTTTCATTTAGTTTTCTTCATCTATCACTGTAGGATGTTTGCTCTTGATTCTGGTGTGCTTGGTTGAGT GTTTGCATGTGTGGATGTGAAAAACTAGCAATGAAAGTAATCTATGTATATATATAAAAAAAAAACAGAGAGGAGGTGGA GTGTAAAAATAGAGTAAACCCTTAAATTGATGGATCTAGGATTAAATTTTTACCAGTTTAGATCTACAAATAATTTTATT GATTGATTACCAGATGCATGCTTTTATGAAACCAATTTAGTCTTCAAGAAGGATGGATGTGGTAAGGTTTTAGATCTTTG ATAGATTAATTCTTTGCAAAAATATTTGGAGTGTAATGTCGTTACGCTCTATTCTTTAGAGGATCAATTTTGGGGTATAC TCTGAAATGTACTATCTTTTCATTTTCGGTTGCAAATTAATTTTCAGCCCTTCGTTCGTTGTCCAAATTCCCCTCTACAC CAACGTAACCTAGTATACCCTGTATCTGGAAATGAACTCTATGGATATATTTGTATACTGAACTAGCAGAGTCATTTCAA AGATTAAATAGTAATTAAGTATGTTAATCTTAGAGTTTTTATGATGGATGCTATAAAAGAGATTAAGCAGCGTAATGGTT GCTGGTCTATTTTGTAGGGCTTGGCTTAAGCTCTGGGTTCTCTATCCATTTCCTTGTTTATTTTATTCTTGCATTAGATT GAAGTCTGTGAGGAATAAGGGGACTGCCAAAAATCTAAACATTTTTTATGTGGACAACATCTAGTATTTTGAGGTGATAG GAAAGCATATTGTTAGAGACTTCCCAAATAATTGGTTTACGTTAAACTAGCCTGAAACCAATTATTTGACAAAAAATTGT TTTCTTTTTACAGATTTGTGAAACCATTTTTAACATAAAACCATTCTGAATTCATTTTATCAATTTGCCAACTCTTTTAC TTAGGGATTTAGAAAGGAAGAGGGGAAAATGATGTGTGGATTTGGAGATGTTTGCTTTGCTTTGGTGCATTTTGATAGAA TGGACCTTTTGAAGATTCAAATTTTTCAACTGAAATTGCTTTCAAACAGAATCGTATTAATTATATATCATTGTTTCTGA GGTAGTATGGTCACTAATGTATTTTTCTCTTTCTTTCCAGCAACTTTCTGAATGGAAGTGATGAAACAATTACTTTAGTT GTAGGAGATCTATTTGAAAAGTTCATGCTATCTGCTCAAAGTACTTGTTACTGTGACACAATGTACTATATTGCTAATCG GGAAATCATTTCAATTTTGTTTGATGTATTAATTATGTTTACTTAATACTGTGTTAGTATGTCTTGAGAGCTTGTCATAT TATTTTTCATACTTTCTATCTGGGAATTTTCAGTTGTTTACATTTTTTAATTCTTCATTGCAGTGTATGATCAATAATTT ATTCGATTTGTTATTGGAACTTGAAGCTTTCAATGGCATCTGAAGAGGTTTTAAAGGCTGTTTTCCCTTTCCTTGAGAGT GTTGATCTTGCTTCCTGTATGTCTGTCTCTAAGCAGTGGAATGACATAGCTAGAGATGACTTCTTTTGGAAATGTCTGTG TGGCAAGAGATGGCCCTCAATCTGCAAGCGACCTAATCCTCCTTCTGTAACCTACTACCAGCTATATAAAACCTTTCATA AACGCCAGCATCGTAGAACTCTTCTCCCTCCGAGAATTTCTTTTGATGATTTGGAGTTCTTCATTGACATTTGGGCTGAA AATACTTTACTCTTCTCCGAAGTGGTGCCTGGCTCTGTCCTGCAGACAGGTTTCAAAATTCCACCATCTGGAGTTTGCGA CTTGCTCAAATATAACCTGGAGGGTTCTGAATACAAGATGACTTTTCCTGTTGAACCTAGGTTTACTATCCCTTCAGGAC AAAATCAGAATGTCAGTGTCTCAGTGATGGTTGGGCGAAAGGATTCAAATAAGGTTGCACGTGTCATAAATAAGTCCATG TTTGATTACATTGATCGTTCATCATACAGAGCCTTGGCATTTGATTACCTGGACATATCCCCTGGCTACCCTTTTACGAC TGGCATCCGAGCATGGATTTCGTTGCTATTCATGGAAGATGGAAATGAAGATCTTATGCATGTATTTGGGATCCAAATGG ATTTCTGTGATGTAGCAAATTCTAAGGAAGAAGTTTTGTGGCTGCTGGACATCCTTGATTGGAAGTAAATGTTCAAACTG TGATGTCCAAACATTAAAATATTGTACGTTGTGCTTTTGTGTTAACTTCAGTTGATACGGGTGCATTACAAGGTTTGCCA TCTTAATTTGTATAATTGCTTGGTGTTAATATCTCGAATGTTTGGAGCATGTAAATACTCTATGAATCCTAGCCATAAAT AATCACTTCTCTTTTCTGCATGTACTGATGTAAATTTATGTAGCTTAAGTATATGATGACTTCTGATCGCCCACCTTGGA TGCTACCTTTGATTTGTGGTGTATGCCTGTTGAGCATAATGAAATAATGGATAATGAAAGATTCATAAACTGGGGCTGGG TTCAGGAATTGCATTTATGGTTCTCAGAATCTTGATTTTCAATTTTCATTTTATTAAGGGATGATTGATTGGTTCAAGAG TTACAAGTTTGATTTTCAATAAAAAAAAGTTTCATGTTCCAGTCTTGTGTATTGGAAAAAACAGAAAGGAAAAAAAAAAG GGATTCCCCCTTTTCCGTTGTTCCATTGAGACCATTAGAGGGAATCTAGAGTGGCTTTGGTTAGCCTTCAGTTTTTGTTA TTGAAAGAAGATTACATTTCAATTTGATCCGTAGGGGAAAGAGATCATTTCAAGAG
CDS sequence (LotjaGi1g1v0511000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTGAAGAGGTTTTAAAGGCTGTTTTCCCTTTCCTTGAGAGTGTTGATCTTGCTTCCTGTATGTCTGTCTCTAA GCAGTGGAATGACATAGCTAGAGATGACTTCTTTTGGAAATGTCTGTGTGGCAAGAGATGGCCCTCAATCTGCAAGCGAC CTAATCCTCCTTCTGTAACCTACTACCAGCTATATAAAACCTTTCATAAACGCCAGCATCGTAGAACTCTTCTCCCTCCG AGAATTTCTTTTGATGATTTGGAGTTCTTCATTGACATTTGGGCTGAAAATACTTTACTCTTCTCCGAAGTGGTGCCTGG CTCTGTCCTGCAGACAGGTTTCAAAATTCCACCATCTGGAGTTTGCGACTTGCTCAAATATAACCTGGAGGGTTCTGAAT ACAAGATGACTTTTCCTGTTGAACCTAGGTTTACTATCCCTTCAGGACAAAATCAGAATGTCAGTGTCTCAGTGATGGTT GGGCGAAAGGATTCAAATAAGGTTGCACGTGTCATAAATAAGTCCATGTTTGATTACATTGATCGTTCATCATACAGAGC CTTGGCATTTGATTACCTGGACATATCCCCTGGCTACCCTTTTACGACTGGCATCCGAGCATGGATTTCGTTGCTATTCA TGGAAGATGGAAATGAAGATCTTATGCATGTATTTGGGATCCAAATGGATTTCTGTGATGTAGCAAATTCTAAGGAAGAA GTTTTGTGGCTGCTGGACATCCTTGATTGGAAGTAA
Protein sequence (LotjaGi1g1v0511000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASEEVLKAVFPFLESVDLASCMSVSKQWNDIARDDFFWKCLCGKRWPSICKRPNPPSVTYYQLYKTFHKRQHRRTLLPP RISFDDLEFFIDIWAENTLLFSEVVPGSVLQTGFKIPPSGVCDLLKYNLEGSEYKMTFPVEPRFTIPSGQNQNVSVSVMV GRKDSNKVARVINKSMFDYIDRSSYRALAFDYLDISPGYPFTTGIRAWISLLFMEDGNEDLMHVFGIQMDFCDVANSKEE VLWLLDILDWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 251 | 251 | 1.6E-136 | – | |
ProSiteProfiles | 1 | 42 | 42 | 9.444 | ||
Gene3D | 3 | 76 | 74 | 6.0E-10 | – | |
SUPERFAMILY | 4 | 74 | 71 | 9.06E-16 | ||
Pfam | 5 | 43 | 39 | 2.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0511000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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