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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF12937
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 143 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 8.681s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0047379.1
n.a. F-box/WD repeat-containing protein [Medicago truncatula] gi|357464045|ref|XP_003602304.1| chr0 15809576 15812040 -
2 domain predictions
1 GO term
Lj0g3v0057289.1
n.a. PREDICTED: F-box protein At1g55000-like [Cicer arietinum] gi|502117167|ref|XP_004495726.1| chr0 18771454 18773249 +
2 domain predictions
1 GO term
Lj0g3v0067819.2
n.a. PREDICTED: F-box protein SKIP5-like [Cicer arietinum] gi|502179825|ref|XP_004516505.1| chr0 24141646 24145029 -
2 domain predictions
1 GO term
Lj0g3v0067819.3
n.a. F-box protein SKIP5 [Medicago truncatula] gi|357456705|ref|XP_003598633.1| chr0 24143110 24145029 -
2 domain predictions
1 GO term
Lj0g3v0068009.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356571461|ref|XP_003553895.1| chr0 24252723 24255843 +
2 domain predictions
1 GO term
Lj0g3v0076589.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357491185|ref|XP_003615880.1| chr0 29233164 29234464 +
2 domain predictions
1 GO term
Lj0g3v0108459.1
n.a. F-box protein SKIP16 [Medicago truncatula] gi|357473077|ref|XP_003606823.1| chr0 46872576 46880319 +
2 domain predictions
1 GO term
Lj0g3v0108459.2
n.a. expressed protein [Oryza sativa Japonica Group] gi|62733972|gb|AAX96081.1| chr0 46872576 46880319 +
2 domain predictions
1 GO term
Lj0g3v0127389.1
n.a. PREDICTED: phytochrome A-associated F-box protein-like [Glycine max] gi|356505578|ref|XP_003521567.1| chr0 57429291 57431431 +
2 domain predictions
1 GO term
Lj0g3v0134829.1
n.a. PREDICTED: F-box protein At5g39250-like [Cicer arietinum] gi|502091289|ref|XP_004489503.1| chr0 61877909 61881003 -
2 domain predictions
1 GO term
Lj0g3v0205909.1
n.a. PREDICTED: F-box protein At5g49610-like [Glycine max] gi|356529089|ref|XP_003533129.1| chr0 102520102 102521555 -
2 domain predictions
1 GO term
Lj0g3v0231099.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 119794498 119795782 -
2 domain predictions
1 GO term
Lj0g3v0237499.1
n.a. PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] gi|356552386|ref|XP_003544549.1| chr0 123147536 123157907 -
2 domain predictions
1 GO term
Lj0g3v0248789.1
n.a. PREDICTED: protein ARABIDILLO 1-like [Glycine max] gi|356568604|ref|XP_003552500.1| chr0 128931432 128934505 +
2 domain predictions
1 GO term
Lj0g3v0274899.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357447213|ref|XP_003593882.1| chr0 142542401 142544858 +
2 domain predictions
1 GO term
Lj0g3v0301359.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr0 156606580 156607755 +
2 domain predictions
1 GO term
Lj0g3v0302029.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356515826|ref|XP_003526599.1| chr0 157051484 157054102 +
2 domain predictions
1 GO term
Lj0g3v0363059.1
n.a. PREDICTED: F-box protein At1g78280-like [Glycine max] gi|356515772|ref|XP_003526572.1| chr0 191474037 191483682 +
2 domain predictions
1 GO term
Lj1g3v0851740.1
n.a. PREDICTED: F-box protein 7-like [Glycine max] gi|356509387|ref|XP_003523431.1| chr1 10988124 10996050 +
2 domain predictions
1 GO term
Lj1g3v1020030.1
n.a. F-box/WD repeat-containing protein [Medicago truncatula] gi|357464045|ref|XP_003602304.1| chr1 12901671 12904135 +
2 domain predictions
1 GO term
Lj1g3v1798690.1
n.a. PREDICTED: F-box only protein 13-like [Glycine max] gi|356507137|ref|XP_003522327.1| chr1 21690396 21692836 -
2 domain predictions
1 GO term
Lj1g3v2157640.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357489399|ref|XP_003614987.1| chr1 26057916 26058262 +
2 domain predictions
1 GO term
Lj1g3v3753740.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356558779|ref|XP_003547680.1| chr1 43077005 43077541 +
2 domain predictions
1 GO term
Lj1g3v3902950.1
n.a. PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Glycine max] gi|356561325|ref|XP_003548933.1| chr1 45236007 45236513 -
2 domain predictions
1 GO term
Lj1g3v4012920.1
n.a. PREDICTED: F-box protein SKIP24-like isoform X2 [Cicer arietinum] gi|502107395|ref|XP_004493250.1| chr1 47552221 47555677 -
2 domain predictions
1 GO term
Lj1g3v4482340.1
n.a. PREDICTED: F-box/kelch-repeat protein OR23-like [Glycine max] gi|356503594|ref|XP_003520592.1| chr1 52456889 52462841 -
2 domain predictions
1 GO term
Lj1g3v4753250.1
n.a. PREDICTED: F-box protein At5g06550-like [Cicer arietinum] gi|502112299|ref|XP_004494286.1| chr1 56991260 56994149 -
2 domain predictions
1 GO term
Lj1g3v4764980.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356572671|ref|XP_003554490.1| chr1 57437725 57441080 +
2 domain predictions
1 GO term
Lj1g3v4765050.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356572671|ref|XP_003554490.1| chr1 57459930 57462739 -
2 domain predictions
1 GO term
Lj2g3v1080760.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357460899|ref|XP_003600731.1| chr2 17658693 17660319 +
2 domain predictions
1 GO term
Lj2g3v1560800.2
n.a. PREDICTED: F-box protein SKIP31-like [Glycine max] gi|356496494|ref|XP_003517102.1| chr2 24872268 24875645 -
2 domain predictions
1 GO term
Lj2g3v1717610.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357439753|ref|XP_003590154.1| chr2 26432083 26436404 -
2 domain predictions
1 GO term
Lj2g3v1890920.1
n.a. F-box protein [Medicago truncatula] gi|357482823|ref|XP_003611698.1| chr2 28100082 28101879 +
2 domain predictions
1 GO term
Lj2g3v3337340.1
n.a. PREDICTED: F-box protein SNE-like [Glycine max] gi|356501691|ref|XP_003519657.1| chr2 42334419 42334898 +
2 domain predictions
1 GO term
Lj3g3v1933140.1
n.a. PREDICTED: actin-related protein 8-like [Cicer arietinum] gi|502127404|ref|XP_004499695.1| chr3 24967290 24975698 +
2 domain predictions
1 GO term
Lj3g3v1933140.2
n.a. PREDICTED: actin-related protein 8-like [Glycine max] gi|356508163|ref|XP_003522829.1| chr3 24967290 24976427 +
2 domain predictions
1 GO term
Lj3g3v2361120.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29592900 29596411 +
2 domain predictions
1 GO term
Lj3g3v2361130.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29592900 29605950 +
2 domain predictions
1 GO term
Lj3g3v2361130.2
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29592900 29596045 +
2 domain predictions
1 GO term
Lj3g3v2362140.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr3 29600431 29603423 +
2 domain predictions
1 GO term
Lj3g3v2987110.1
n.a. PREDICTED: F-box protein At2g27310-like [Cicer arietinum] gi|502083488|ref|XP_004487475.1| chr3 36967186 36967676 -
2 domain predictions
1 GO term
Lj3g3v2994530.1
n.a. PREDICTED: F-box/LRR-repeat protein At1g67190-like isoform 1 [Glycine max] gi|356542750|ref|XP_003539828.1| chr3 37119082 37120200 +
2 domain predictions
1 GO term
Lj4g3v0816700.1
n.a. PREDICTED: F-box protein SKIP2-like [Glycine max] gi|356514260|ref|XP_003525824.1| chr4 12695014 12697112 +
2 domain predictions
1 GO term
Lj4g3v1073490.1
n.a. PREDICTED: actin-related protein 8-like [Glycine max] gi|356559153|ref|XP_003547865.1| chr4 15326381 15339203 -
2 domain predictions
1 GO term
Lj4g3v1073490.2
n.a. PREDICTED: actin-related protein 8-like isoform X2 [Cicer arietinum] gi|502154203|ref|XP_004509619.1| chr4 15326381 15339203 -
2 domain predictions
1 GO term
Lj4g3v1597030.1
n.a. PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Glycine max] gi|356561325|ref|XP_003548933.1| chr4 23429722 23430228 +
2 domain predictions
1 GO term
Lj4g3v1880660.1
n.a. PREDICTED: EIN3-binding F-box protein 1-like [Glycine max] gi|356548573|ref|XP_003542675.1| chr4 26092553 26095968 +
2 domain predictions
1 GO term
Lj4g3v2325800.1
n.a. n.a. chr4 32344641 32350205 -
2 domain predictions
1 GO term
Lj4g3v3019470.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g29420-like [Glycine max] gi|356527730|ref|XP_003532461.1| chr4 40523090 40525369 +
2 domain predictions
1 GO term
Lj5g3v0369960.1
n.a. PREDICTED: F-box protein SKP2A-like [Cicer arietinum] gi|502136121|ref|XP_004502567.1| chr5 3465866 3468999 +
2 domain predictions
1 GO term