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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0537800 |
Transcript ID | LotjaGi1g1v0537800.4 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 70 kDa heat shock protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|Q9LHA8|MD37C_ARATH Probable mediator of RNA polymerase II transcription subunit 37c; TrEMBL-Plants: tr|F6HLD8|F6HLD8_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0537800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106610038..106612658) extracted from Lotus japonicus Gifu genome v1.2.
GCCGCCGGTAAAGCAAAGCGTCCTATTATCATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTGTGGCAGCA CGACGCCGTCCAAATCATCGCCAACGACCAGGGCAACCGTACCACCCCTTCTTACGTCGCTTTCACTCATTCCGAACGCT TAATCGGTGATGCCGCCAAGAGCCAGGTCACCAGAAACCCCACCAATACTGTCTTCGGTATAGCATCATCCCCTTCCTCT GTTTTAGCTTCACATTTTGCTTGTTTTGATAATGCACTCGAATTGTTCGACGAAATGTCTGTTTGAATGAATGTATGAAT CTGTTAACATTATGCAGTAAGTAGTTGTGTGATGGAGTTATTGGTTAGTTGAATTGAATTGAATTGAATATGTGGTTGTA GATGCTAAGCGTTTGATTGGAAGGAGTTTCTCTGATGATTCAGTTCAGAGTGACATCAAGCTATGGCCATTCGAGGTTAT TGCTGGTTCAGCCGACAAGCCTATGATTGTTGTTAGCTACAAGAATGAGGAGAAGAAGTTCACAGCTGAGGAGATTTCCT CCATGGTCCTTAGCAAGATGCGTGAGATTGCTGAGGCTTATCTTGGTTTTGCTGTGAAGAATGCTGTTGTTACTGTCCCG GCGTATTTTAATGACTCCCAGCGCCGGGCCACCAAGGATGCTGGTGTCATTGCAGGCCTCAATGTCATGCGTATACTTAA TGAACCTACAGCGGCTGCCATTGCGTATGGCCTTGACAAGAGTGACACCGGTGATGATGAGATCAATGTGTTGATTTTTG ACCTTGGTGGTGGTACTTTTGATGTCTCTCTTTTAACCATTGAAGATGGTGTCTTTGAAGTTAATTCCACTGCGGGTGAC TCGCATCTTGGAGGTGAGGACTTTGATAACAGGATGGTGAACAATTTTGTTGAGGAGTTCAAGAGGAAGCACGAGAAGGA CATTAGTGGGAACCCGAGGGCTTTAAGAAGGTTGAGGACCGCATGTGAAAGGGCAAAGAGGACTCTCTCATCCACTGTAC AGACCACCATTGAGATTGACTCGTTGTATGAAGGTGTTGACTTATACACTGATATCACTCGTGAAAAGTTTGAAGAGCTC AACATGGACCTCTTCACGAAGTGCATGGAGCCAGTTGACAAGTGTTTGAAGGATGCTAGGATGGACAAGAGCAGTGTCCA TGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTGCAGCAGCTGTTGCAGGATTTCTTCAACGGGAAGGAGC TCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCTTGAGTCATGAGAGTCAT GAGAAGGTTAAGGATCTTGTGTTGGTGGATGTCATTCCCCTTTCACTTGGTGTGGAAACTGCTGGTGGTGTCATGACTGT CCTGATTCCAAGGAACTGTCCAATCCCATTCAAGAAGGAGCAGGTTTTCTCAACCAACTCAGACAACCAGCCTGGTGTGT TGATCAAGGTGTACGAGGGTGAGAGAACAAGGAGCAGCGACAACAACTTGTTAGGTAAATTTGAGCTTTGTGGCATTCTT CCTGCTCCAAGGGGTGTTCCTCAGATCAATGTTTGCTTTGTCATTGATGAGAATGGTATCCTGAAGGTCTCTGCTGAAGA TGAGACTACTGGTGAGAAAAACAATATCACTATTACAAATGACGAGGGGAGACTCTCGAAAGAGGAGATTGAGAAGATGG TGCAGGAGGCGGAGAAGTACAAGGTCGAGGATGAGGAGCACAAGAAGAAGGTCGATGCCAAAAAAGCCTTGGAGAAGATG GTGCAGGAGGGGGAGAAGTACAATTCTTCAAAAGATAGTCCATATCAACACTTGGAGGCACAAGTACAACATGATACTTG CCATGATCAGATTGCATTACCAACTCCTAGTTCAAGTTTACAATCCTTTCCTTCCGGAAACTTTGGGTATTATTTCAACT CCACAAAAGTGGCTTCACAGAAAATTATAAAGGGACTAAAAGATGATAATTGCTATGTACTTGGATTGTATGGAAAGAGA GGCTCTGGTAAAACAGCATTACTGAAAGCTGAGATAGAAGAGTATGAAAAGATTTTTCGTAGAGTGGTATTTCTCACCGT GTCTGAGAATCAAGATATCAAGAGCATTCGAGTGGGAATTGCTAGCTCCTTGAACGTGTTTGAAAAAGATGACAATGATG GTGCGAGAATAATGAAAATAATTTTGGCATTAGAAAGGAAGGATCGAACTACTCTTGTTATCTTGGATAATTTTCCGTCG AAGTCTAAACTGCAAGAATTAGGTGTTCCTTATAATAGTAAACAGTACAAGTTCCTTTTGACTGCACGTAATGAGACAGA CTGCATCTTGATGGGATGTGATCATTTGATTCCTCTCGAGCCCTTATCTAATGAGGAAGCTTTTTCCCTGCTACAAAAAC TTTCAGGCGTTGACTCCCAGATTGATCTATTTAAAGTGGTACAGGATGTTGCTTTTAAATGCAATGGCTTACCGGGTTTA ATTAAAGACGTGGCGTTTTCCTTGAAAAATAAGTCTATTGAGAAGTGGCAAGAATCATTAG
CDS sequence (LotjaGi1g1v0537800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGTTGTTAGCTACAAGAATGAGGAGAAGAAGTTCACAGCTGAGGAGATTTCCTCCATGGTCCTTAGCAAGATGCG TGAGATTGCTGAGGCTTATCTTGGTTTTGCTGTGAAGAATGCTGTTGTTACTGTCCCGGCGTATTTTAATGACTCCCAGC GCCGGGCCACCAAGGATGCTGGTGTCATTGCAGGCCTCAATGTCATGCGTATACTTAATGAACCTACAGCGGCTGCCATT GCGTATGGCCTTGACAAGAGTGACACCGGTGATGATGAGATCAATGTGTTGATTTTTGACCTTGGTGGTGGTACTTTTGA TGTCTCTCTTTTAACCATTGAAGATGGTGTCTTTGAAGTTAATTCCACTGCGGGTGACTCGCATCTTGGAGGTGAGGACT TTGATAACAGGATGGTGAACAATTTTGTTGAGGAGTTCAAGAGGAAGCACGAGAAGGACATTAGTGGGAACCCGAGGGCT TTAAGAAGGTTGAGGACCGCATGTGAAAGGGCAAAGAGGACTCTCTCATCCACTGTACAGACCACCATTGAGATTGACTC GTTGTATGAAGGTGTTGACTTATACACTGATATCACTCGTGAAAAGTTTGAAGAGCTCAACATGGACCTCTTCACGAAGT GCATGGAGCCAGTTGACAAGTGTTTGAAGGATGCTAGGATGGACAAGAGCAGTGTCCATGATGTTGTTCTTGTTGGTGGG TCTACTAGGATCCCAAAAGTGCAGCAGCTGTTGCAGGATTTCTTCAACGGGAAGGAGCTCTGCAAGAGCATCAACCCAGA TGAGGCTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCTTGAGTCATGAGAGTCATGAGAAGGTTAAGGATCTTGTGT TGGTGGATGTCATTCCCCTTTCACTTGGTGTGGAAACTGCTGGTGGTGTCATGACTGTCCTGATTCCAAGGAACTGTCCA ATCCCATTCAAGAAGGAGCAGGTTTTCTCAACCAACTCAGACAACCAGCCTGGTGTGTTGATCAAGGTGTACGAGGGTGA GAGAACAAGGAGCAGCGACAACAACTTGTTAGGTAAATTTGAGCTTTGTGGCATTCTTCCTGCTCCAAGGGGTGTTCCTC AGATCAATGTTTGCTTTGTCATTGATGAGAATGGTATCCTGAAGGTCTCTGCTGAAGATGAGACTACTGGTGAGAAAAAC AATATCACTATTACAAATGACGAGGGGAGACTCTCGAAAGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAA GGTCGAGGATGAGGAGCACAAGAAGAAGGTCGATGCCAAAAAAGCCTTGGAGAAGATGGTTCTAAACTGCAAGAATTAG
Protein sequence (LotjaGi1g1v0537800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVVSYKNEEKKFTAEEISSMVLSKMREIAEAYLGFAVKNAVVTVPAYFNDSQRRATKDAGVIAGLNVMRILNEPTAAAI AYGLDKSDTGDDEINVLIFDLGGGTFDVSLLTIEDGVFEVNSTAGDSHLGGEDFDNRMVNNFVEEFKRKHEKDISGNPRA LRRLRTACERAKRTLSSTVQTTIEIDSLYEGVDLYTDITREKFEELNMDLFTKCMEPVDKCLKDARMDKSSVHDVVLVGG STRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAIQAAILSHESHEKVKDLVLVDVIPLSLGVETAGGVMTVLIPRNCP IPFKKEQVFSTNSDNQPGVLIKVYEGERTRSSDNNLLGKFELCGILPAPRGVPQINVCFVIDENGILKVSAEDETTGEKN NITITNDEGRLSKEEIEKMVQEAEKYKVEDEEHKKKVDAKKALEKMVLNCKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 452 | 452 | 1.9E-274 | – | |
PANTHER | 1 | 452 | 452 | 1.9E-274 | ||
SUPERFAMILY | 2 | 86 | 85 | 1.0E-29 | ||
Gene3D | 2 | 13 | 12 | 2.6E-127 | – | |
Pfam | 3 | 450 | 448 | 1.8E-190 | ||
Gene3D | 14 | 279 | 266 | 2.6E-127 | – | |
PRINTS | 41 | 61 | 21 | 8.6E-60 | – | |
Gene3D | 87 | 266 | 180 | 2.6E-127 | – | |
SUPERFAMILY | 91 | 282 | 192 | 6.29E-68 | ||
ProSitePatterns | 98 | 111 | 14 | - | ||
PRINTS | 104 | 114 | 11 | 8.6E-60 | – | |
Gene3D | 130 | 207 | 78 | 2.6E-127 | – | |
PRINTS | 232 | 248 | 17 | 8.6E-60 | – | |
ProSitePatterns | 235 | 249 | 15 | - | ||
PRINTS | 264 | 284 | 21 | 8.6E-60 | – | |
Gene3D | 280 | 452 | 173 | 6.7E-75 | ||
SUPERFAMILY | 287 | 444 | 158 | 4.84E-57 | ||
PRINTS | 291 | 310 | 20 | 8.6E-60 | – | |
PRINTS | 372 | 388 | 17 | 8.6E-60 | – | |
Coils | 416 | 436 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0537800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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