Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0537800 |
| Transcript ID | LotjaGi1g1v0537800.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70 kDa heat shock protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|Q9LHA8|MD37C_ARATH Probable mediator of RNA polymerase II transcription subunit 37c; TrEMBL-Plants: tr|F6HLD8|F6HLD8_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0537800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106610208..106612658) extracted from Lotus japonicus Gifu genome v1.2.
GCCGCCGGTAAAGCAAAGCGTCCTATTATCATCGGAATCGACCTCGGCACCACCTACTCCTGCGTCGGAGTGTGGCAGCA CGACGCCGTCCAAATCATCGCCAACGACCAGGGCAACCGTACCACCCCTTCTTACGTCGCTTTCACTCATTCCGAACGCT TAATCGGTGATGCCGCCAAGAGCCAGGTCACCAGAAACCCCACCAATACTGTCTTCGGTATAGCATCATCCCCTTCCTCT GTTTTAGCTTCACATTTTGCTTGTTTTGATAATGCACTCGAATTGTTCGACGAAATGTCTGTTTGAATGAATGTATGAAT CTGTTAACATTATGCAGTAAGTAGTTGTGTGATGGAGTTATTGGTTAGTTGAATTGAATTGAATTGAATATGTGGTTGTA GATGCTAAGCGTTTGATTGGAAGGAGTTTCTCTGATGATTCAGTTCAGAGTGACATCAAGCTATGGCCATTCGAGGTTAT TGCTGGTTCAGCCGACAAGCCTATGATTGTTGTTAGCTACAAGAATGAGGAGAAGAAGTTCACAGCTGAGGAGATTTCCT CCATGGTCCTTAGCAAGATGCGTGAGATTGCTGAGGCTTATCTTGGTTTTGCTGTGAAGAATGCTGTTGTTACTGTCCCG GCGTATTTTAATGACTCCCAGCGCCGGGCCACCAAGGATGCTGGTGTCATTGCAGGCCTCAATGTCATGCGTATACTTAA TGAACCTACAGCGGCTGCCATTGCGTATGGCCTTGACAAGAGTGACACCGGTGATGATGAGATCAATGTGTTGATTTTTG ACCTTGGTGGTGGTACTTTTGATGTCTCTCTTTTAACCATTGAAGATGGTGTCTTTGAAGTTAATTCCACTGCGGGTGAC TCGCATCTTGGAGGTGAGGACTTTGATAACAGGATGGTGAACAATTTTGTTGAGGAGTTCAAGAGGAAGCACGAGAAGGA CATTAGTGGGAACCCGAGGGCTTTAAGAAGGTTGAGGACCGCATGTGAAAGGGCAAAGAGGACTCTCTCATCCACTGTAC AGACCACCATTGAGATTGACTCGTTGTATGAAGGTGTTGACTTATACACTGATATCACTCGTGAAAAGTTTGAAGAGCTC AACATGGACCTCTTCACGAAGTGCATGGAGCCAGTTGACAAGTGTTTGAAGGATGCTAGGATGGACAAGAGCAGTGTCCA TGATGTTGTTCTTGTTGGTGGGTCTACTAGGATCCCAAAAGTGCAGCAGCTGTTGCAGGATTTCTTCAACGGGAAGGAGC TCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCTTGAGTCATGAGAGTCAT GAGAAGGTTAAGGATCTTGTGTTGGTGGATGTCATTCCCCTTTCACTTGGTGTGGAAACTGCTGGTGGTGTCATGACTGT CCTGATTCCAAGGAACTGTCCAATCCCATTCAAGAAGGAGCAGGTTTTCTCAACCAACTCAGACAACCAGCCTGGTGTGT TGATCAAGGTGTACGAGGGTGAGAGAACAAGGAGCAGCGACAACAACTTGTTAGGTAAATTTGAGCTTTGTGGCATTCTT CCTGCTCCAAGGGGTGTTCCTCAGATCAATGTTTGCTTTGTCATTGATGAGAATGGTATCCTGAAGGTCTCTGCTGAAGA TGAGACTACTGGTGAGAAAAACAATATCACTATTACAAATGACGAGGGGAGACTCTCGAAAGAGGAGATTGAGAAGATGG TGCAGGAGGCGGAGAAGTACAAGGTCGAGGATGAGGAGCACAAGAAGAAGGTCGATGCCAAAAAAGCCTTGGAGAAGATG GTGCAGGAGGGGGAGAAGTACAATTCTTCAAAAGATAGTCCATATCAACACTTGGAGGCACAAGTACAACATGATACTTG CCATGATCAGATTGCATTACCAACTCCTAGTTCAAGTTTACAATCCTTTCCTTCCGGAAACTTTGGGTATTATTTCAACT CCACAAAAGTGGCTTCACAGAAAATTATAAAGGGACTAAAAGATGATAATTGCTATGTACTTGGATTGTATGGAAAGAGA GGCTCTGGTAAAACAGCATTACTGAAAGCTGAGATAGAAGAGTATGAAAAGATTTTTCGTAGAGTGGTATTTCTCACCGT GTCTGAGAATCAAGATATCAAGAGCATTCGAGTGGGAATTGCTAGCTCCTTGAACGTGTTTGAAAAAGATGACAATGATG GTGCGAGAATAATGAAAATAATTTTGGCATTAGAAAGGAAGGATCGAACTACTCTTGTTATCTTGGATAATTTTCCGTCG AAGTCTAAACTGCAAGAATTAGGTGTTCCTTATAATAGTAAACAGTACAAGTTCCTTTTGACTGCACGTAATGAGACAGA CTGCATCTTGATGGGATGTGATCATTTGATTCCTCTCGAGCCCTTATCTAA
CDS sequence (LotjaGi1g1v0537800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGTTGTTAGCTACAAGAATGAGGAGAAGAAGTTCACAGCTGAGGAGATTTCCTCCATGGTCCTTAGCAAGATGCG TGAGATTGCTGAGGCTTATCTTGGTTTTGCTGTGAAGAATGCTGTTGTTACTGTCCCGGCGTATTTTAATGACTCCCAGC GCCGGGCCACCAAGGATGCTGGTGTCATTGCAGGCCTCAATGTCATGCGTATACTTAATGAACCTACAGCGGCTGCCATT GCGTATGGCCTTGACAAGAGTGACACCGGTGATGATGAGATCAATGTGTTGATTTTTGACCTTGGTGGTGGTACTTTTGA TGTCTCTCTTTTAACCATTGAAGATGGTGTCTTTGAAGTTAATTCCACTGCGGGTGACTCGCATCTTGGAGGTGAGGACT TTGATAACAGGATGGTGAACAATTTTGTTGAGGAGTTCAAGAGGAAGCACGAGAAGGACATTAGTGGGAACCCGAGGGCT TTAAGAAGGTTGAGGACCGCATGTGAAAGGGCAAAGAGGACTCTCTCATCCACTGTACAGACCACCATTGAGATTGACTC GTTGTATGAAGGTGTTGACTTATACACTGATATCACTCGTGAAAAGTTTGAAGAGCTCAACATGGACCTCTTCACGAAGT GCATGGAGCCAGTTGACAAGTGTTTGAAGGATGCTAGGATGGACAAGAGCAGTGTCCATGATGTTGTTCTTGTTGGTGGG TCTACTAGGATCCCAAAAGTGCAGCAGCTGTTGCAGGATTTCTTCAACGGGAAGGAGCTCTGCAAGAGCATCAACCCAGA TGAGGCTGTTGCTTATGGAGCTGCTATTCAGGCTGCTATCTTGAGTCATGAGAGTCATGAGAAGGTTAAGGATCTTGTGT TGGTGGATGTCATTCCCCTTTCACTTGGTGTGGAAACTGCTGGTGGTGTCATGACTGTCCTGATTCCAAGGAACTGTCCA ATCCCATTCAAGAAGGAGCAGGTTTTCTCAACCAACTCAGACAACCAGCCTGGTGTGTTGATCAAGGTGTACGAGGGTGA GAGAACAAGGAGCAGCGACAACAACTTGTTAGGTAAATTTGAGCTTTGTGGCATTCTTCCTGCTCCAAGGGGTGTTCCTC AGATCAATGTTTGCTTTGTCATTGATGAGAATGGTATCCTGAAGGTCTCTGCTGAAGATGAGACTACTGGTGAGAAAAAC AATATCACTATTACAAATGACGAGGGGAGACTCTCGAAAGAGGAGATTGAGAAGATGGTGCAGGAGGCGGAGAAGTACAA GGTCGAGGATGAGGAGCACAAGAAGAAGGTCGATGCCAAAAAAGCCTTGGAGAAGATGGTGCAGGAGGGGGAGAAGTACA ATTCTTCAAAAGATAGTCCATATCAACACTTGGAGATGACAATGATGGTGCGAGAATAA
Protein sequence (LotjaGi1g1v0537800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVVSYKNEEKKFTAEEISSMVLSKMREIAEAYLGFAVKNAVVTVPAYFNDSQRRATKDAGVIAGLNVMRILNEPTAAAI AYGLDKSDTGDDEINVLIFDLGGGTFDVSLLTIEDGVFEVNSTAGDSHLGGEDFDNRMVNNFVEEFKRKHEKDISGNPRA LRRLRTACERAKRTLSSTVQTTIEIDSLYEGVDLYTDITREKFEELNMDLFTKCMEPVDKCLKDARMDKSSVHDVVLVGG STRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAIQAAILSHESHEKVKDLVLVDVIPLSLGVETAGGVMTVLIPRNCP IPFKKEQVFSTNSDNQPGVLIKVYEGERTRSSDNNLLGKFELCGILPAPRGVPQINVCFVIDENGILKVSAEDETTGEKN NITITNDEGRLSKEEIEKMVQEAEKYKVEDEEHKKKVDAKKALEKMVQEGEKYNSSKDSPYQHLEMTMMVRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 446 | 446 | 6.8E-274 | – | |
| PANTHER | 1 | 446 | 446 | 6.8E-274 | ||
| SUPERFAMILY | 2 | 86 | 85 | 1.07E-29 | ||
| Gene3D | 2 | 13 | 12 | 3.0E-127 | – | |
| Pfam | 3 | 457 | 455 | 4.1E-191 | ||
| Gene3D | 14 | 279 | 266 | 3.0E-127 | – | |
| PRINTS | 41 | 61 | 21 | 1.1E-59 | – | |
| Gene3D | 87 | 266 | 180 | 3.0E-127 | – | |
| SUPERFAMILY | 91 | 282 | 192 | 7.13E-68 | ||
| ProSitePatterns | 98 | 111 | 14 | - | ||
| PRINTS | 104 | 114 | 11 | 1.1E-59 | – | |
| Gene3D | 130 | 207 | 78 | 3.0E-127 | – | |
| PRINTS | 232 | 248 | 17 | 1.1E-59 | – | |
| ProSitePatterns | 235 | 249 | 15 | - | ||
| PRINTS | 264 | 284 | 21 | 1.1E-59 | – | |
| Gene3D | 280 | 461 | 182 | 2.4E-75 | ||
| SUPERFAMILY | 287 | 444 | 158 | 5.36E-57 | ||
| PRINTS | 291 | 310 | 20 | 1.1E-59 | – | |
| PRINTS | 372 | 388 | 17 | 1.1E-59 | – | |
| Coils | 416 | 436 | 21 | - | – | |
| MobiDBLite | 448 | 472 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0537800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…