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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0548200 |
| Transcript ID | LotjaGi1g1v0548200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-tRNA hydrolase family protein; TAIR: AT5G16140.1 Peptidyl-tRNA hydrolase family protein; Swiss-Prot: sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic; TrEMBL-Plants: tr|I3SEB0|I3SEB0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0548200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107817845..107821677) extracted from Lotus japonicus Gifu genome v1.2.
GGGGTGGTGATGGGGTTGGTGGTGGATGAGTAATGGTGATGGAGTTGGTGGTGGAGGAGTAATGGTGCTCAAAAGGTGGC AGTGTGCGACAGGTTTTCGGATTCAACGAATCCGAAGTACTTCGGATTGTACGTTTCCGAATTATGTCTGTCATTTAAGT GTCAGATTCAACAAGGTATTATTCGAAACTTTGGATTCCGAAGTGTTACGGATACCCGGTGTCCGAAAGGGTAGTTCTGG CATTTTTTAAAAAATCTGGGGTGCCATTTCTAAGCCCTGGGGTGCCAAATCCAGAGCTCTCTTGTTCCCCATTGGGTCTG ATATTTTTCTCTGCTACGTTTCTTCGTTGGTGGAAGCTGCTGCTGAGTGAAGAAAAACGAGAAATTGAATGTGTCTTCGA AGTGCTAAGCAAAATAGAATTCCCCCGTGTTGAGCAACCAGCAGCATAACTCTGTTTTGGAGTGTTTCATTTCACCACCG ATTAACCCCTTCGAAGGTGAGGGAAGCTAGGTTGGTGTCACTTCTTGTTCCCAGTTTCACTTTGTCTTTTGGGTCTTTTC CTATTACTCATGCCGTTTTTCTGTTTTTTTATTATTTGCTCAAACCCCATCACTTTTTTATTTTGAAAATCAAATCTTTG GTCAGGTTTCTGAGTTTCTGCAAATATAATTCACTGGTTGTTTCTGAATTTTGAATAATGATACAAGTTTCTATATACAT ATTATGTAGGAACTATATATTCTGCTTGATAAATGCTGGAAAGGATGTTGACTATAACTTGTTTGAAGAATTGCCTAGCC TGCCTCTGTTCCACACAGGGAACAACACTTGTGTTGCTAAGCCTATTTTTTCATGCTCACACCGAATATGATTTTTCCTT GCTTTTATATGTTGATACTGGTGTAGTCTCAGAGTTTTTGTAATGAACCAATTATCCTAAAAGCTTAAGTATGTGGGTAT AGGACACATGAATGTTTATATATCTAACACGCACCCTTTGGCAAGAGCCCACTTGGGCTTGAAGCGTGCACAATGCAAAT GCAAAGACCCACCTACCATGTGTTGAAATTCAACTTTTTAACTCTAGACCACTTAGCCATAGAGGCTCTGATACCATGTC ATGAACTAATTATCCCAAAAGCTTAAACCGTTTGGGTAAATGACACATGAATAATTATATATCTGACGGTTTTAGTGGTT TCCATTAAAAGAAATGCAGATAACATTTTGTTCTTTCTAGATTTCCCCTTACTCTTTTGTTAAGAAAAAATACTTGTTAG TGCAAATTTTAAGTGATTGTATGTTTCATTTGCTATGTGGTTGCCAGTGCAATGATAGCCTTTCTCATTGTATGTCCTTT TTTCATTTTTCAACAGATCAATGTTGCATGCAGCATCTGCCCCAAGCCTTTGTTTAAGCTATCCCAGGAACCTTCATTAT CCTAGTAACTTAACAAAGCATCCGGCCAAAACAAGATTTTCTGTTCGTTGTTCAGTGCCAGGGACAAAGAATGGAGCTCA AGTGGAATATACTCCATGGCTCGTTGTTGGCTTGGGTAATCCTGGAAGTAAATACCATGGCACAAGGCACAATGTAAATT TTTTACTTATTTGTGGAAGCACTTGAATGCACTTCTATTTCGTAGCAAATCTTATGGTTTTCTCTTTACTAGGTTGGATT TGAAATAATTGATAGCCTTTCTCGAGCAGAAGGGATTCTTATGAACACAATACAGTCAAAGGCCTTGATTGGACTAGGTA CATCATCTGCTAGAATTGATTTTATTTATTGTTTTTCCGCTCGCCATCATGACTTCATATTGATGGTTACTGTAATTGAC TTATATTCTTCTTTAATCTGTACAGGTTCAATAGGAGACGTACCAGTTTTGCTGGCAAAGCCCCAAACATACATGAACTT CAGTGGAGAAGCAGTTAGTTTTATCATGCATAATGACTAAATTTTCCAAAACACACACATATTAAAACCGTCATGGATGA AGTGTCTGGTTCAATGCTTATTTTGTACACGTTGATTATGGTCCATAATCTGTCACGTTTTGTTACTTTTATGTTCCTGA TATTATCTTATTTATAATCTTTATAAAGGTCGGGCCGCTGGCTGCATATTATCGAATACCCTTGCGTCATATTATACTAG TATGTATTTCTTACCTTACTCCTGTTTAAAAATAGTTTGTGACACTGACAGCTTACAAATTTGTCTGAATTTCTTTTGGA CTTAAGTTTGTGGGAACTTTAATGTAGGTATATGATGAAACAAGCCTTCCAAATGGTGTTTTAAGGCTTCAACCTAAAGG TGGACATGGGCATCACAATGGGTAATGCTTGTTGCATTTCCCATAAATGGTCATTAAGAAATTTTTTATACAGCAGAACA AAATATGATTTCAAAAGTATGACTTCATAGTTTAGCTATTCCAAACGTTTAACTTTATCAAACTGTGAGACAGTAAACAA ACTTTCTATAAACTTATTGGCATAACAGAAATGAATTGAAGATATCCAAAGTTGGTTGGGGTTCTAGGATGCACTATGCA TTAATGGTGGCACATAAGATAGAAAGAAAGCCCATTGAAATTTTCTTAACTCTTAATGATGTGGGTGGTTTGTGGGCATA GCTTTATCAATTATCACTTATTGCTTCAACTCCAAAGTAGAATTCTCATGTCTGAACTTTAACTTGATTTGTCTGTTTCG GTAAACAATTTAATCTAACGCTTACAAAAACAAACACTTCTCCATAAGCTAATTGAGAAGCTTACTGAAATAATCTCTTT ATATGTTACAAGTAGGTATAAGCGCTTATTCATTATGAGCAACTTATGAAAATAAGTTCAAAATAACTTATTGGCAGGTC ATAAGTTATTTCTTTTTTCTCAATTCATTTCTTAAATGTTTTCTTCAGTACATGTTAGTGCTAAAGAAATGTCCCAAATT ATTTCATTACTTGTATGATTTTTTGGATAAGACACTAAGACTGCAATCCCAATATAGCATTTCTTGTTTTCATCTTATTT GGGAACTGGTAAAACATTTCTCTGTTGTCATCTTGTACTTGGAAATAATGAACTCTAAAACTGGAGTTGATTTTACAGAT TGAAAAACGTGATGGGTCATTTGGATGGTTCTCGTGATTTTCCTCGACTTGCAATCGGTTAGTTACTTGTCTACTGTCAT TTTATGAGTTGATATGGTCTGTTAAGTGGTTTCAGAGTTGTATATTTCAAAATTGTGTTAGGAATTGGAAACCCTCCTGG ATCTATGGATTCAAGAGCTTTTCTTCTACAGAAGTTCAGTTCAGTGGAACGCCAGCAGGTTATACCTTCTCTTCCTCTTT CAAGCATGAATTGATTTAGTTCTTCAGTAATAATCCTATTATTTGTGACACCAGTTTAGATTTTGTTAAAAATTATGCAG TATGCACCTTTTTTCTTTTTGAATTTTGATGGCAATGCTTTTTTCCTTCTTTCAAATAACAGATTGATGATTCATTGGAG CAAGGAGTTCAAGCTATCAGAACCTTAGTTCTCCATGGGTTTAGCCAGCATGTCAGTAGATTCAATTTAGGGCAAAAATA CAAGTACCACAAAGTTTAACTTTAACAGCCAGTTTTTTGGCATAGATGAAAGTCATGGTTACCTTTTTTGTGTATGCTGA TAGTTTATCCTCAAAAAATTCCCTGATCTGTGAATTTGTGTAAAGCTCACACATGCAATGGTGCTCATATGGCTATGGCA CATAGTCACTTCGTAACACGTAATGAAAACTTCATTTCACTAAGTGAGGTCGGCAATATGTTCAATTGATAAA
CDS sequence (LotjaGi1g1v0548200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCATGCAGCATCTGCCCCAAGCCTTTGTTTAAGCTATCCCAGGAACCTTCATTATCCTAGTAACTTAACAAAGCA TCCGGCCAAAACAAGATTTTCTGTTCGTTGTTCAGTGCCAGGGACAAAGAATGGAGCTCAAGTGGAATATACTCCATGGC TCGTTGTTGGCTTGGGTAATCCTGGAAGTAAATACCATGGCACAAGGCACAATGTTGGATTTGAAATAATTGATAGCCTT TCTCGAGCAGAAGGGATTCTTATGAACACAATACAGTCAAAGGCCTTGATTGGACTAGGTTCAATAGGAGACGTACCAGT TTTGCTGGCAAAGCCCCAAACATACATGAACTTCAGTGGAGAAGCAGTCGGGCCGCTGGCTGCATATTATCGAATACCCT TGCGTCATATTATACTAGTATATGATGAAACAAGCCTTCCAAATGGTGTTTTAAGGCTTCAACCTAAAGGTGGACATGGG CATCACAATGGATTGAAAAACGTGATGGGTCATTTGGATGGTTCTCGTGATTTTCCTCGACTTGCAATCGGAATTGGAAA CCCTCCTGGATCTATGGATTCAAGAGCTTTTCTTCTACAGAAGTTCAGTTCAGTGGAACGCCAGCAGATTGATGATTCAT TGGAGCAAGGAGTTCAAGCTATCAGAACCTTAGTTCTCCATGGGTTTAGCCAGCATGTCAGTAGATTCAATTTAGGGCAA AAATACAAGTACCACAAAGTTTAA
Protein sequence (LotjaGi1g1v0548200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHAASAPSLCLSYPRNLHYPSNLTKHPAKTRFSVRCSVPGTKNGAQVEYTPWLVVGLGNPGSKYHGTRHNVGFEIIDSL SRAEGILMNTIQSKALIGLGSIGDVPVLLAKPQTYMNFSGEAVGPLAAYYRIPLRHIILVYDETSLPNGVLRLQPKGGHG HHNGLKNVMGHLDGSRDFPRLAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRTLVLHGFSQHVSRFNLGQ KYKYHKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 247 | 247 | 3.7E-129 | – | |
| PANTHER | 1 | 247 | 247 | 3.7E-129 | ||
| Gene3D | 38 | 240 | 203 | 1.7E-71 | ||
| SUPERFAMILY | 51 | 237 | 187 | 1.01E-60 | ||
| Hamap | 52 | 230 | 179 | 30.889 | ||
| TIGRFAM | 54 | 237 | 184 | 9.7E-52 | ||
| Pfam | 54 | 234 | 181 | 4.3E-50 | ||
| ProSitePatterns | 65 | 78 | 14 | - | ||
| ProSitePatterns | 158 | 168 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aminoacyl-tRNA hydrolase activity | Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA. |
Expression pattern of LotjaGi1g1v0548200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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