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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0551800 |
Transcript ID | LotjaGi1g1v0551800.4 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 14-3-3 protein; TAIR: AT3G02520.1 general regulatory factor 7; Swiss-Prot: sp|O49997|1433E_TOBAC 14-3-3-like protein E; TrEMBL-Plants: tr|I3T321|I3T321_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0551800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108313930..108315385) extracted from Lotus japonicus Gifu genome v1.2.
GCAGATTCTTCGTCTCCCCGTGAGGAGAATGTTTACCTGGCCAAGTTGGCGGAGCAGGCAGAGCGGTATGAGGAGATGGT GGAGTTCATGGAGAAGGTTGCCAAGTCGGTGGACGCTGGGGAGTTGACGGTGGAGGAGAGGAACTTACTCTCTGTGGCGT ACAAGAATGTGATTGGGGCGAGGAGGGCTTCCTGGAGGATCATCTCCTCCATTGAGCAGAAGGAGGAGAGCAGAGGGAAT GAGGACCATGTCTCTGTTATCAAGGAGTACAGGGGAAAGATTGAGGCTGAGCTCAGCAAGATCTGTGATGGAATTTTGAA TCTCCTTGAGTCCAATCTCATACCATCTGCTGCGGCCCCTGAGTCTAAGGTGTTTTACCTTAAAATGAAAGGTGACTACC ACAGGTACCTTGCTGAGTTCAAGACTGGGGCAGAGAGAAAAGAAGCTGCAGAAAGTACTTTGTTAGCTTACAAATCAGCT CAGGTATACATATATTCTATAGCTGTATATACATCCTACATTCATCCATAGATAGATGCTTGTATAAGTAGTGGTTACTT TCGCTACACACGCTAAACTCAATTTGTGGTTAATTGATCCAGGATATTGCTCTTGCTGAACTTGCCCCCACCCACCCGAT TAGGCTCGGTCTTGCACTCAACTTTTCTGTGTTCTACTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCGA AGCAGGTATCTTTACTTGCTATCTGATATGAAGGCTTTTTTTTTAATTCCTGGCTGCTGTATCTTAATTGATCATCGAGG AAGAAATTATCTTTATGTGTGGCTGAGTATGGACCGTAGACCATAGTGGGAATCTGTTGTGTCCATCCACTTGCATCGAA AAGTTTGTTTTTGAACAGAACTATTGGAAATTGCTTATGGAGTCCCAATAAATATACGCTGGACTTTGCAGCCTAATCTA TTATATGAATTGAAGTTATATAATTTTATTAATTTTGTTCAGGAGAATTTTAGAATTTAATTCTTCTTTAAGAGATTGAA CTTAGTACAGTGTAACTGATTTCAATCCCGTTCATTCCTTAAATCATATTACTATTTCTTTATTTGACATGACTAATGTA TTCTGTACTTTACTTAGCATTTGGTACTTCATGTAATGATGGATCTAAAAGCTCCGTGATGGTTTATTTGTTTATTTCAT CTATGTGTTCTCTTCTGTTTAGTAACCTATGAAAAATGCTTTACTGTGGCAGGCATTTGATGAGGCGATTTCTGAGCTTG ACACATTGGGTGAAGAGTCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGAGATAATCTGACTTTGTGGACGTCC GACATTACGGTATCTCTCTCTACCTTCCCTCGCATGTTGTGTACACATATACTAAATATCTCTTCTTTAACATTGTTGAC GAACCTTGATGGCTGA
CDS sequence (LotjaGi1g1v0551800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGTTCATGGAGAAGGTTGCCAAGTCGGTGGACGCTGGGGAGTTGACGGTGGAGGAGAGGAACTTACTCTCTGT GGCGTACAAGAATGTGATTGGGGCGAGGAGGGCTTCCTGGAGGATCATCTCCTCCATTGAGCAGAAGGAGGAGAGCAGAG GGAATGAGGACCATGTCTCTGTTATCAAGGAGTACAGGGGAAAGATTGAGGCTGAGCTCAGCAAGATCTGTGATGGAATT TTGAATCTCCTTGAGTCCAATCTCATACCATCTGCTGCGGCCCCTGAGTCTAAGGTGTTTTACCTTAAAATGAAAGGTGA CTACCACAGGTACCTTGCTGAGTTCAAGACTGGGGCAGAGAGAAAAGAAGCTGCAGAAAGTACTTTGTTAGCTTACAAAT CAGCTCAGGATATTGCTCTTGCTGAACTTGCCCCCACCCACCCGATTAGGCTCGGTCTTGCACTCAACTTTTCTGTGTTC TACTATGAAATCCTTAACTCGCCAGATCGTGCTTGTAATCTTGCGAAGCAGGCATTTGATGAGGCGATTTCTGAGCTTGA CACATTGGGTGAAGAGTCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGAGATAATCTGACTTTGTGGACGTCCG ACATTACGGTATCTCTCTCTACCTTCCCTCGCATGTTGTGTACACATATACTAAATATCTCTTCTTTAACATTGTTGACG AACCTTGATGGCTGA
Protein sequence (LotjaGi1g1v0551800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEFMEKVAKSVDAGELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIKEYRGKIEAELSKICDGI LNLLESNLIPSAAAPESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVF YYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITVSLSTFPRMLCTHILNISSLTLLT NLDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 216 | 216 | 9.3E-142 | – | |
Gene3D | 1 | 214 | 214 | 1.4E-117 | ||
Pfam | 1 | 212 | 212 | 9.5E-96 | ||
SMART | 1 | 225 | 225 | 7.8E-175 | ||
SUPERFAMILY | 1 | 214 | 214 | 1.31E-95 | ||
PANTHER | 1 | 216 | 216 | 9.3E-142 | ||
PIRSF | 1 | 221 | 221 | 4.5E-106 | ||
PRINTS | 16 | 45 | 30 | 6.0E-88 | ||
ProSitePatterns | 22 | 32 | 11 | - | ||
PRINTS | 65 | 89 | 25 | 6.0E-88 | ||
PRINTS | 96 | 118 | 23 | 6.0E-88 | ||
PRINTS | 131 | 157 | 27 | 6.0E-88 | ||
PRINTS | 158 | 184 | 27 | 6.0E-88 | ||
PRINTS | 185 | 214 | 30 | 6.0E-88 | ||
ProSitePatterns | 194 | 213 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0551800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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