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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0563600 |
| Transcript ID | LotjaGi1g1v0563600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gag polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP; TrEMBL-Plants: tr|K7KSE0|K7KSE0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0563600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109668968..109671731) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTTCAGACAGCCGCAGCCGAAGCAGAAGCAGGAGCAGGAGCCCAATGGACCGTAAGATCCGGTCTGACCGATTCTC CTATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGGTTTTTTTCTTTTTTTGTTTGGTTTTAGACTATTT ATTTGTTGTTGTGTTGTTCTACTGGAATGGATTTTTTAGGGAAGCTGAAGAAGATTGGAAGTGTGCTCTGTTAGAGGAGG CTTTAAATCTAAATTATGCTGTTTATAAAACCTTAAGCACATTTACTTATTGCTTTCATGATATGCTATCTTCTTTCTCC CCCTGCCACCTTGATTAGTTTGGATTATGGAACTTAAATTGTGGTTTGCATCTAAAACATATTCATGGGTTCTGGTTTCT TAGCTACATAATTACCAAAATGATGTACCCCAAGCCAATTGGCATTTTGAATGTGTGTGTGCATTTCTCAAAGTGATAAC AATATTTTGTTTTTCTTGTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGGCCAGGTCATTTTGCTAGAGAATGCCCT AATGTTGCTATTTGCCACAACTGTGGCCTCCCAGGGTATGGAATTCATTATCATTTTTCATAACTGAGCATAAATTATGT GATGTTCTGCTTGCTCTGAAATAGCAGTTTCACGTAGTGAAAGATGATTCAGGAAATGGTTAAGGGCGATGGAAGTTGGC TTACTTGATGGCTTTTTAATTTGGACCTGGCATAATTAAGTTTAGATTGGATGTTATCCAATAAATGTATTGCTTCCATT CCATTTGAACTTCAATTTTAATTTCTAGATTTGGATATCAATTATCATTCACAATCCTTAATTATGTTTCTTCCGAAGAA ATTTTCTCTCTGGGTGAAACATGCTTAAATGTTAGTAATGTCACAATATGGATATCTTGAATTTGCCCTAGGCCTAACTT TACCTCCAAAGCTAGCTCGTAAGGTGATAATGGCTAAAGCTTTTATAAGCTCTATTTTGACTATCTAGTCGATGTGAGAT CTCAACATCTCCGTCACACTAGGAATGTCGTGCGGGCAGTAAATTGCATTGGGAAAACTGCAGGGTCAGGCTAATTTTTG GTCTGTAGTTGGTGGCTCAATATCATATATAGGATAAGTTCGGATATCATCTTGAATTTTTACTAAGATAAACTCTACCT TAACAGCTAGCTCGTAAGCTGAGGATGCCAAAACATTTATAAGCTCTACACTGGTCATGTCATATCTATAGTGATGTGGG ATATGAACATGATGTTCAACCATATTCATTTTCATGTTACATTACGTGTTGCTTATCCTCCCGCCATATCACCTATTATC ATTCATCTTGGTCCTTTTTTTTTGCAGTTCAATCTAGTGGTACCTTCATGAGGCATCTTTTATTCTGAGAAATTTGACAA AGAAAAACATGATTTGCCTTGATTTACTACTAGATTCCATCTCATCTCATAATTTGCACCTTTGTAATCATGCTGTTTAA CCCTCAGCTTTGTTATTACTTCTATCTTATCTGATAGTGCAACTATGTTAGTGCCATCTTCTTTTTGTATTTATGGATAA AAGCCAATTTCTTTATTGAACCTGATGGCAGAATATTAGTTTCTCCTTTGACAAAAATGCAGTGGCGGCTACTTAATGTG GGGCCTCTCTCGTTTCAGACTCTTATTGTCACCATTTTCTTTTTATGCCATTTTCTCTTCTGTGATCAATGTCCTTTTGC TTTTACCATCTCATTGATAATTTAAGTTTGGAACATGGGTTGTTTGATTTTTACCACTTCCATATTTAAAGTGAAAAGAA AAGTATTATTTGATTTATATTAGAAGTCAACTTGAATGCTGTCAAACTCTATATTTGATATTTTCTAACAAGTTTTATGG CTTGGTTTTCTGATTTCATTTTTAATGTTTAATCAGGCACATTGCTTCAGAATGCACCACAAAGTCGCTGTGCTGGAATT GTAAGGAACCTGGCCACATGGCAAGCAGTTGTCCAAATGAGGGCATTTGCCACACCTGTGGCAAAGTTGGACACCGTGCT AGGGAGTGCTCAGCTCCTCCTATGCCTCCAGGGGACTTGAGGTTGTGCAACAACTGTTATAAGCAGGGCCATATTGCAGT TGAATGTACTAATGAGAAGGCGTGCAACAACTGTAGGAAGACAGGTCACCTCGCACGTGATTGTCCAAATGATCCCATCT GCAACTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAATCCAACATTCTAGGGGACCGCAGCAGTGGTGGC GGTGGTGGTATGGGTGGTCGTGGTGGTGGCGGCGGGGGTGGTTACAGGGATGTTGTATGCAGGAACTGCCAGCAACTGGG TCACATGAGCAGGGATTGCATGGGACCATTGATGATCTGTCACAATTGTGGAGGTCGTGGTCACCTGGCCTATGAGTGCC CTTCTGGTCGGTTTATGGATCGCTATGCACCAAACACAAGGAGGTACTGATCCATGGCTGATTGTGGATTACTATTATAT GGTTGTTTTAGATGATTTTATCACCGAGGACAGATTTGAATCTTGGTAGTGTTGTGTTGGCTTTACTCTTTCTTTTTTAT GCCAATCTGGCTGCCATTCAGTATTTTTATTTGTGCTTGTACTAGAAATAAAAGTTTGCTACTTTTAAGAGGTGTGGATT GTACACATTATGTTGCCGGATAAGGCCATTTAATTTCGAATTGA
CDS sequence (LotjaGi1g1v0563600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCAGACAGCCGCAGCCGAAGCAGAAGCAGGAGCAGGAGCCCAATGGACCGTAAGATCCGGTCTGACCGATTCTC CTATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGAACTGCAAGAGGCCAG GTCATTTTGCTAGAGAATGCCCTAATGTTGCTATTTGCCACAACTGTGGCCTCCCAGGGCACATTGCTTCAGAATGCACC ACAAAGTCGCTGTGCTGGAATTGTAAGGAACCTGGCCACATGGCAAGCAGTTGTCCAAATGAGGGCATTTGCCACACCTG TGGCAAAGTTGGACACCGTGCTAGGGAGTGCTCAGCTCCTCCTATGCCTCCAGGGGACTTGAGGTTGTGCAACAACTGTT ATAAGCAGGGCCATATTGCAGTTGAATGTACTAATGAGAAGGCGTGCAACAACTGTAGGAAGACAGGTCACCTCGCACGT GATTGTCCAAATGATCCCATCTGCAACTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAATCCAACATTCT AGGGGACCGCAGCAGTGGTGGCGGTGGTGGTATGGGTGGTCGTGGTGGTGGCGGCGGGGGTGGTTACAGGGATGTTGTAT GCAGGAACTGCCAGCAACTGGGTCACATGAGCAGGGATTGCATGGGACCATTGATGATCTGTCACAATTGTGGAGGTCGT GGTCACCTGGCCTATGAGTGCCCTTCTGGTCGGTTTATGGATCGCTATGCACCAAACACAAGGAGTGCTTGTACTAGAAA TAAAAGTTTGCTACTTTTAAGAGGTGTGGATTGTACACATTATGTTGCCGGATAA
Protein sequence (LotjaGi1g1v0563600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECT TKSLCWNCKEPGHMASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLAR DCPNDPICNLCNVSGHVARQCPKSNILGDRSSGGGGGMGGRGGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGR GHLAYECPSGRFMDRYAPNTRSACTRNKSLLLLRGVDCTHYVAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 3 | 257 | 255 | 7.0E-133 | – | |
| PANTHER | 3 | 257 | 255 | 7.0E-133 | – | |
| Gene3D | 33 | 81 | 49 | 5.1E-11 | – | |
| SUPERFAMILY | 37 | 82 | 46 | 5.23E-10 | ||
| SMART | 46 | 62 | 17 | 4.7E-4 | ||
| Pfam | 46 | 62 | 17 | 3.5E-6 | ||
| ProSiteProfiles | 47 | 62 | 16 | 9.851 | ||
| SMART | 65 | 81 | 17 | 0.0017 | ||
| ProSiteProfiles | 66 | 79 | 14 | 9.504 | ||
| Pfam | 66 | 80 | 15 | 2.8E-5 | ||
| Gene3D | 82 | 101 | 20 | 9.9E-6 | – | |
| SUPERFAMILY | 83 | 121 | 39 | 5.35E-10 | ||
| SMART | 84 | 100 | 17 | 3.8E-5 | ||
| ProSiteProfiles | 85 | 100 | 16 | 9.933 | ||
| Pfam | 85 | 100 | 16 | 5.5E-6 | ||
| Gene3D | 102 | 146 | 45 | 1.4E-10 | – | |
| Pfam | 103 | 118 | 16 | 2.2E-5 | ||
| SMART | 103 | 119 | 17 | 0.0044 | ||
| ProSiteProfiles | 104 | 117 | 14 | 9.752 | ||
| SUPERFAMILY | 124 | 165 | 42 | 3.05E-11 | ||
| Pfam | 129 | 147 | 19 | 0.092 | – | |
| SMART | 129 | 145 | 17 | 0.026 | ||
| Gene3D | 147 | 186 | 40 | 2.1E-11 | – | |
| Pfam | 148 | 164 | 17 | 3.4E-6 | ||
| SMART | 148 | 164 | 17 | 1.4E-4 | ||
| ProSiteProfiles | 149 | 164 | 16 | 10.015 | ||
| SMART | 167 | 183 | 17 | 0.02 | ||
| Pfam | 167 | 183 | 17 | 0.0018 | ||
| ProSiteProfiles | 168 | 183 | 16 | 8.614 | ||
| SUPERFAMILY | 204 | 251 | 48 | 9.54E-12 | ||
| Gene3D | 206 | 251 | 46 | 2.8E-11 | – | |
| SMART | 213 | 229 | 17 | 0.0056 | ||
| Pfam | 213 | 227 | 15 | 9.0E-7 | ||
| ProSiteProfiles | 214 | 227 | 14 | 9.142 | ||
| Pfam | 233 | 249 | 17 | 2.1E-5 | ||
| SMART | 233 | 249 | 17 | 0.001 | ||
| ProSiteProfiles | 234 | 249 | 16 | 9.834 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0563600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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